Wall clock time and date at job start Tue Mar 31 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 N 1.46503 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.36756 * 127.14056 * 269.98287 * 4 3 2 6 6 C 1.50701 * 126.34500 * 0.05503 * 5 4 3 7 7 N 1.30306 * 107.31569 * 180.02562 * 5 4 3 8 8 N 1.28526 * 110.07707 * 359.97438 * 7 5 4 9 9 C 1.31287 * 109.86077 * 0.02562 * 8 7 5 10 10 S 1.76197 * 126.48543 * 180.02562 * 9 8 7 11 11 C 1.80998 * 100.00193 * 359.96816 * 10 9 8 12 12 C 1.52991 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47517 * 300.00342 * 12 11 10 14 14 C 1.53002 * 109.46968 * 60.00458 * 12 11 10 15 15 C 1.50702 * 109.47098 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99921 * 1.32847 * 15 12 11 17 17 C 1.37881 * 119.99989 * 181.32259 * 15 12 11 18 18 N 1.31519 * 119.99907 * 194.01128 * 17 15 12 19 19 Si 1.86798 * 119.99905 * 14.01234 * 17 15 12 20 20 H 1.48499 * 109.46965 * 84.54369 * 19 17 15 21 21 H 1.48502 * 109.46942 * 204.53944 * 19 17 15 22 22 H 1.48493 * 109.47329 * 324.54032 * 19 17 15 23 23 H 1.08997 * 109.47366 * 300.00306 * 1 2 3 24 24 H 1.09002 * 109.47309 * 60.00261 * 1 2 3 25 25 H 1.09003 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47596 * 240.00168 * 2 1 3 27 27 H 1.09002 * 109.47309 * 119.99739 * 2 1 3 28 28 H 1.09006 * 109.47102 * 59.99787 * 3 2 1 29 29 H 1.09006 * 109.47287 * 300.00039 * 3 2 1 30 30 H 1.08996 * 109.46630 * 269.99916 * 6 5 4 31 31 H 1.08993 * 109.46727 * 29.99731 * 6 5 4 32 32 H 1.08997 * 109.47258 * 149.99741 * 6 5 4 33 33 H 1.08998 * 109.46992 * 300.00729 * 11 10 9 34 34 H 1.09002 * 109.46586 * 60.00484 * 11 10 9 35 35 H 1.08998 * 109.47343 * 69.41191 * 13 12 11 36 36 H 1.09002 * 109.47556 * 189.40944 * 13 12 11 37 37 H 1.09001 * 109.47525 * 309.41314 * 13 12 11 38 38 H 1.09004 * 109.47305 * 59.99967 * 14 12 11 39 39 H 1.09009 * 109.47086 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47274 * 299.99695 * 14 12 11 41 41 H 0.97000 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3302 1.4432 1.0911 6 6 3.9012 1.4426 2.5358 7 7 5.5562 1.4436 0.6497 8 7 5.5624 1.4428 -0.6355 9 6 4.3298 1.4424 -1.0875 10 16 3.8339 1.4407 -2.7782 11 6 5.4558 1.4408 -3.5816 12 6 5.2725 1.4388 -5.1005 13 6 4.4962 0.1886 -5.5189 14 6 4.4946 2.6870 -5.5220 15 6 6.6230 1.4383 -5.7694 16 1 7.5219 1.4176 -5.1711 17 6 6.7109 1.4640 -7.1452 18 7 7.8529 1.1883 -7.7364 19 14 5.2080 1.8907 -8.1692 20 1 5.0884 3.3666 -8.2817 21 1 5.3490 1.3008 -9.5248 22 1 3.9920 1.3439 -7.5155 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7970 2.4701 2.8841 31 1 2.9451 0.9280 2.6306 32 1 4.6513 0.9293 3.1374 33 1 6.0090 2.3313 -3.2831 34 1 6.0098 0.5513 -3.2817 35 1 3.4655 0.2683 -5.1736 36 1 4.5095 0.0992 -6.6052 37 1 4.9606 -0.6926 -5.0762 38 1 5.0477 3.5778 -5.2239 39 1 4.3644 2.6858 -6.6043 40 1 3.5178 2.6870 -5.0382 41 1 7.9148 1.2068 -8.7042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572257802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:27 Heat of formation + Delta-G solvation = 72.410362 kcal Electronic energy + Delta-G solvation = -20417.921007 eV Core-core repulsion = 17460.720706 eV Total energy + Delta-G solvation = -2957.200301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.75290 -36.55960 -36.32605 -32.87582 -32.26551 -31.85597 -28.17593 -26.93739 -26.68774 -26.34025 -24.93094 -22.83680 -22.14642 -20.82813 -19.27503 -17.52116 -16.30808 -16.17462 -16.12117 -15.51493 -15.48358 -14.30810 -13.95349 -13.75373 -13.58872 -13.18055 -13.11420 -12.99668 -12.77776 -12.70781 -12.55289 -12.04809 -11.94234 -11.90799 -11.40519 -11.34287 -11.24494 -10.93675 -10.51993 -10.24448 -10.19000 -10.13844 -10.06347 -9.88288 -9.56393 -9.02452 -8.71093 -8.45261 -7.28787 -6.13664 -4.11241 1.40750 1.72760 2.55366 2.73749 2.94709 3.26050 3.33549 3.40068 4.25086 4.28456 4.36889 4.43729 4.70367 4.77869 4.93274 5.05461 5.16757 5.20042 5.26734 5.40764 5.51698 5.58419 5.65740 5.68894 5.81562 5.84904 5.89523 6.08833 6.13284 6.40280 6.44345 6.55732 6.58705 6.69545 6.77958 6.90740 7.18497 7.39981 7.69278 8.45042 8.80047 8.91543 9.49421 10.99232 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.004504 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.754674 B = 6214.946825 C = 6965.782457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.107 3.893 4 N -0.468 5.468 5 C 0.166 3.834 6 C -0.061 4.061 7 N -0.288 5.288 8 N -0.292 5.292 9 C 0.166 3.834 10 S -0.029 6.029 11 C -0.056 4.056 12 C 0.053 3.947 13 C -0.145 4.145 14 C -0.152 4.152 15 C -0.510 4.510 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.881 3.119 20 H -0.284 1.284 21 H -0.304 1.304 22 H -0.248 1.248 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.982 -0.343 16.874 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C -0.016 4.016 4 N -0.163 5.163 5 C -0.103 4.103 6 C -0.121 4.121 7 N -0.128 5.128 8 N -0.135 5.135 9 C -0.208 4.208 10 S 0.201 5.799 11 C -0.204 4.204 12 C 0.050 3.950 13 C -0.203 4.203 14 C -0.209 4.209 15 C -0.550 4.550 16 H 0.096 0.904 17 C -0.125 4.125 18 N -0.526 5.526 19 Si 0.714 3.286 20 H -0.212 1.212 21 H -0.233 1.233 22 H -0.174 1.174 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.441 -0.361 16.266 23.130 hybrid contribution -0.809 0.338 -0.114 0.884 sum -17.250 -0.023 16.152 23.631 Atomic orbital electron populations 1.21683 0.93971 1.02652 1.02275 1.21908 0.97011 0.95247 1.03810 1.22009 0.75333 0.99244 1.05046 1.46496 1.08166 1.56483 1.05109 1.24990 0.87158 1.06045 0.92154 1.20153 1.02305 1.03700 0.85898 1.73941 1.17304 1.17967 1.03588 1.74760 1.15831 1.20405 1.02552 1.27288 0.89896 1.06735 0.96869 1.85457 1.17076 1.92072 0.85307 1.23902 0.91294 1.06461 0.98777 1.18400 0.96788 0.92048 0.87808 1.22363 0.97103 0.99094 1.01747 1.22447 0.98445 1.00130 0.99880 1.20717 0.90382 1.52270 0.91588 0.90394 1.24940 0.95783 0.94159 0.97640 1.69948 1.25786 1.46927 1.09962 0.87345 0.84628 0.78423 0.78242 1.21201 1.23271 1.17365 0.92421 0.91991 0.91798 0.90412 0.91273 0.88649 0.88279 0.89902 0.90698 0.88804 0.89229 0.89112 0.95185 0.92337 0.93140 0.92541 0.93828 0.94345 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.14 -1.13 6.26 -26.73 -0.17 -1.30 16 3 C 0.11 0.95 5.75 -4.04 -0.02 0.93 16 4 N -0.47 -6.30 2.81 -113.53 -0.32 -6.62 16 5 C 0.17 2.28 8.07 -153.99 -1.24 1.04 16 6 C -0.06 -0.49 10.09 36.01 0.36 -0.13 16 7 N -0.29 -5.23 12.18 33.00 0.40 -4.83 16 8 N -0.29 -5.82 11.60 30.68 0.36 -5.47 16 9 C 0.17 2.85 8.07 -88.33 -0.71 2.14 16 10 S -0.03 -0.48 19.05 -107.50 -2.05 -2.53 16 11 C -0.06 -1.14 4.16 37.15 0.15 -0.99 16 12 C 0.05 1.18 0.52 -155.67 -0.08 1.10 16 13 C -0.15 -3.07 7.41 37.15 0.28 -2.80 16 14 C -0.15 -3.20 7.46 37.16 0.28 -2.92 16 15 C -0.51 -13.87 8.62 -34.44 -0.30 -14.17 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.91 16 17 C 0.08 2.18 5.32 -17.82 -0.09 2.08 16 18 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 19 Si 0.88 21.24 22.79 -169.99 -3.87 17.37 16 20 H -0.28 -6.81 7.10 56.52 0.40 -6.41 16 21 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.25 -5.48 4.65 56.52 0.26 -5.21 16 23 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.60 7.88 -51.93 -0.41 0.19 16 29 H 0.10 0.89 7.86 -51.93 -0.41 0.48 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.91 8.14 -51.92 -0.42 1.48 16 34 H 0.09 1.95 8.14 -51.91 -0.42 1.52 16 35 H 0.03 0.55 7.29 -51.93 -0.38 0.18 16 36 H 0.06 1.30 4.30 -51.93 -0.22 1.08 16 37 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.96 2.25 -51.92 -0.12 0.84 16 40 H 0.04 0.71 6.91 -51.93 -0.36 0.35 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -32.56 333.14 -7.52 -40.08 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.65 Total: -1.55 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.18 Total: -15.50 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 1.21 Total: -42.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -3.87 Total: 17.37 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.05 Total: -2.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.56 -7.52 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572257802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.491 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds