Wall clock time and date at job start Tue Mar 31 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 N 1.46503 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.36756 * 127.14056 * 269.98287 * 4 3 2 6 6 C 1.50701 * 126.34500 * 0.05503 * 5 4 3 7 7 N 1.30306 * 107.31569 * 180.02562 * 5 4 3 8 8 N 1.28526 * 110.07707 * 359.97438 * 7 5 4 9 9 C 1.31287 * 109.86077 * 0.02562 * 8 7 5 10 10 S 1.76197 * 126.48543 * 180.02562 * 9 8 7 11 11 C 1.80998 * 100.00193 * 359.96816 * 10 9 8 12 12 C 1.52991 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47517 * 300.00342 * 12 11 10 14 14 C 1.53002 * 109.46968 * 60.00458 * 12 11 10 15 15 C 1.50702 * 109.47098 * 180.02562 * 12 11 10 16 16 H 1.08000 * 119.99921 * 1.32847 * 15 12 11 17 17 C 1.37881 * 119.99989 * 181.32259 * 15 12 11 18 18 N 1.31519 * 119.99907 * 194.01128 * 17 15 12 19 19 Si 1.86798 * 119.99905 * 14.01234 * 17 15 12 20 20 H 1.48499 * 109.46965 * 84.54369 * 19 17 15 21 21 H 1.48502 * 109.46942 * 204.53944 * 19 17 15 22 22 H 1.48493 * 109.47329 * 324.54032 * 19 17 15 23 23 H 1.08997 * 109.47366 * 300.00306 * 1 2 3 24 24 H 1.09002 * 109.47309 * 60.00261 * 1 2 3 25 25 H 1.09003 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47596 * 240.00168 * 2 1 3 27 27 H 1.09002 * 109.47309 * 119.99739 * 2 1 3 28 28 H 1.09006 * 109.47102 * 59.99787 * 3 2 1 29 29 H 1.09006 * 109.47287 * 300.00039 * 3 2 1 30 30 H 1.08996 * 109.46630 * 269.99916 * 6 5 4 31 31 H 1.08993 * 109.46727 * 29.99731 * 6 5 4 32 32 H 1.08997 * 109.47258 * 149.99741 * 6 5 4 33 33 H 1.08998 * 109.46992 * 300.00729 * 11 10 9 34 34 H 1.09002 * 109.46586 * 60.00484 * 11 10 9 35 35 H 1.08998 * 109.47343 * 69.41191 * 13 12 11 36 36 H 1.09002 * 109.47556 * 189.40944 * 13 12 11 37 37 H 1.09001 * 109.47525 * 309.41314 * 13 12 11 38 38 H 1.09004 * 109.47305 * 59.99967 * 14 12 11 39 39 H 1.09009 * 109.47086 * 179.97438 * 14 12 11 40 40 H 1.09002 * 109.47274 * 299.99695 * 14 12 11 41 41 H 0.97000 * 119.99780 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3302 1.4432 1.0911 6 6 3.9012 1.4426 2.5358 7 7 5.5562 1.4436 0.6497 8 7 5.5624 1.4428 -0.6355 9 6 4.3298 1.4424 -1.0875 10 16 3.8339 1.4407 -2.7782 11 6 5.4558 1.4408 -3.5816 12 6 5.2725 1.4388 -5.1005 13 6 4.4962 0.1886 -5.5189 14 6 4.4946 2.6870 -5.5220 15 6 6.6230 1.4383 -5.7694 16 1 7.5219 1.4176 -5.1711 17 6 6.7109 1.4640 -7.1452 18 7 7.8529 1.1883 -7.7364 19 14 5.2080 1.8907 -8.1692 20 1 5.0884 3.3666 -8.2817 21 1 5.3490 1.3008 -9.5248 22 1 3.9920 1.3439 -7.5155 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7970 2.4701 2.8841 31 1 2.9451 0.9280 2.6306 32 1 4.6513 0.9293 3.1374 33 1 6.0090 2.3313 -3.2831 34 1 6.0098 0.5513 -3.2817 35 1 3.4655 0.2683 -5.1736 36 1 4.5095 0.0992 -6.6052 37 1 4.9606 -0.6926 -5.0762 38 1 5.0477 3.5778 -5.2239 39 1 4.3644 2.6858 -6.6043 40 1 3.5178 2.6870 -5.0382 41 1 7.9148 1.2068 -8.7042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572257802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:26 Heat of formation + Delta-G solvation = 52.647953 kcal Electronic energy + Delta-G solvation = -20418.777969 eV Core-core repulsion = 17460.720706 eV Total energy + Delta-G solvation = -2958.057263 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.92866 -38.31335 -37.25214 -34.00045 -33.70746 -33.23525 -29.35205 -28.25745 -28.02923 -27.58511 -27.04084 -23.93359 -22.94536 -21.88854 -21.01657 -18.71552 -18.15976 -17.43516 -17.38399 -17.20886 -16.16134 -15.54528 -15.44166 -14.98984 -14.87412 -14.74969 -14.55257 -13.91107 -13.79929 -13.76766 -13.58264 -13.33585 -13.13649 -13.06732 -12.72284 -12.50720 -12.41062 -12.20593 -12.01482 -11.95596 -11.80941 -11.77414 -11.37108 -11.23268 -10.91204 -10.76606 -10.60973 -10.44764 -8.62878 -8.31140 -6.33229 0.08356 0.59383 1.10594 1.36570 1.36826 1.49975 1.64958 1.70769 2.33804 3.04301 3.42091 3.56427 3.80547 3.94196 3.95375 4.08941 4.18932 4.23156 4.39117 4.47546 4.53768 4.65784 4.69281 4.74015 4.77769 4.83779 4.85084 4.86246 4.91747 5.01146 5.03501 5.12551 5.18887 5.19364 5.38599 5.42731 5.64361 5.72253 5.82932 6.29060 6.70004 7.31008 7.57759 8.86057 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.025830 B = 0.004504 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.754674 B = 6214.946825 C = 6965.782457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.096 3.904 4 N -0.460 5.460 5 C 0.187 3.813 6 C -0.061 4.061 7 N -0.341 5.341 8 N -0.341 5.341 9 C 0.144 3.856 10 S 0.030 5.970 11 C -0.059 4.059 12 C 0.049 3.951 13 C -0.143 4.143 14 C -0.150 4.150 15 C -0.515 4.515 16 H 0.028 0.972 17 C 0.021 3.979 18 N -0.944 5.944 19 Si 0.940 3.060 20 H -0.278 1.278 21 H -0.310 1.310 22 H -0.207 1.207 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.751 0.086 18.737 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.025 4.025 4 N -0.154 5.154 5 C -0.084 4.084 6 C -0.120 4.120 7 N -0.181 5.181 8 N -0.184 5.184 9 C -0.232 4.232 10 S 0.259 5.741 11 C -0.208 4.208 12 C 0.046 3.954 13 C -0.201 4.201 14 C -0.207 4.207 15 C -0.555 4.555 16 H 0.046 0.954 17 C -0.177 4.177 18 N -0.583 5.583 19 Si 0.768 3.232 20 H -0.205 1.205 21 H -0.240 1.240 22 H -0.131 1.131 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.246 0.067 18.168 27.955 hybrid contribution 0.713 0.178 -0.454 0.864 sum -20.534 0.245 17.714 27.120 Atomic orbital electron populations 1.21661 0.91957 1.03148 1.03295 1.21876 0.98580 0.94229 1.02830 1.22489 0.72470 1.00409 1.07086 1.46790 1.09701 1.55181 1.03741 1.26043 0.86063 1.02030 0.94216 1.20493 1.03965 1.05715 0.81846 1.73841 1.20181 1.21037 1.03069 1.74642 1.17904 1.21936 1.03939 1.27282 0.90272 1.07831 0.97835 1.84815 1.12203 1.92365 0.84692 1.23505 0.94327 1.04513 0.98481 1.18343 0.94548 0.93869 0.88604 1.22286 0.98710 0.97943 1.01124 1.22384 0.99805 0.98779 0.99766 1.20987 0.91484 1.51332 0.91658 0.95383 1.25820 0.99026 0.93919 0.98958 1.70107 1.28703 1.49206 1.10300 0.86389 0.82258 0.78484 0.76040 1.20505 1.23972 1.13093 0.90431 0.91955 0.91620 0.92929 0.90843 0.84861 0.88059 0.87630 0.87342 0.88294 0.91176 0.91400 0.91798 0.93157 0.93606 0.92929 0.94241 0.90927 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.14 -1.72 6.26 30.59 0.19 -1.53 16 3 C 0.10 1.35 5.75 86.38 0.50 1.84 16 4 N -0.46 -11.35 2.81 -513.09 -1.44 -12.79 16 5 C 0.19 4.76 8.07 137.63 1.11 5.87 16 6 C -0.06 -0.74 10.09 71.24 0.72 -0.02 16 7 N -0.34 -12.48 12.18 -49.52 -0.60 -13.08 16 8 N -0.34 -13.96 11.60 -56.85 -0.66 -14.62 16 9 C 0.14 4.85 8.07 179.55 1.45 6.30 16 10 S 0.03 0.96 19.05 -56.49 -1.08 -0.11 16 11 C -0.06 -2.48 4.16 71.98 0.30 -2.18 16 12 C 0.05 2.19 0.52 -52.93 -0.03 2.17 16 13 C -0.14 -5.81 7.41 71.98 0.53 -5.27 16 14 C -0.15 -6.01 7.46 71.98 0.54 -5.47 16 15 C -0.52 -29.30 8.62 25.60 0.22 -29.08 16 16 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 17 C 0.02 1.19 5.32 84.65 0.45 1.64 16 18 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 19 Si 0.94 43.44 22.79 68.60 1.56 45.01 16 20 H -0.28 -12.52 7.10 99.48 0.71 -11.81 16 21 H -0.31 -14.63 7.11 99.48 0.71 -13.92 16 22 H -0.21 -8.24 4.65 99.48 0.46 -7.77 16 23 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.13 0.91 7.88 -2.38 -0.02 0.89 16 29 H 0.10 1.42 7.86 -2.38 -0.02 1.40 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.62 7.92 -2.39 -0.02 0.60 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 3.15 8.14 -2.40 -0.02 3.13 16 34 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.06 2.15 7.29 -2.39 -0.02 2.13 16 36 H 0.05 2.11 4.30 -2.39 -0.01 2.10 16 37 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 38 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.04 1.61 2.25 -2.38 -0.01 1.61 16 40 H 0.07 2.39 6.91 -2.39 -0.02 2.38 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -76.85 333.14 5.54 -71.31 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.76 Total: 9.51 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 6.69 Total: -26.10 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -2.41 Total: -99.61 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.56 Total: 45.01 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.08 Total: -0.11 kcal Total: -76.85 5.54 -71.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572257802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.957 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds