Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37006 * 125.07552 * 2 1 4 4 C 1.34173 * 109.91706 * 179.97438 * 3 2 1 5 5 C 1.46568 * 107.01555 * 359.97438 * 4 3 2 6 6 C 1.39673 * 133.90582 * 180.02562 * 5 4 3 7 7 C 1.36517 * 119.86783 * 179.97438 * 6 5 4 8 8 C 1.39447 * 120.45511 * 0.02562 * 7 6 5 9 9 N 1.39804 * 119.74445 * 179.97438 * 8 7 6 10 10 C 1.46500 * 120.00273 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.46949 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00252 * 11 10 9 13 13 C 1.47204 * 109.47042 * 65.00020 * 11 10 9 14 14 N 7.91479 * 93.71592 * 196.38584 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99976 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.38374 * 120.50386 * 0.25577 * 8 7 6 25 25 C 1.37706 * 125.07481 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47036 * 89.98010 * 1 2 3 27 27 H 1.08996 * 109.46919 * 209.97821 * 1 2 3 28 28 H 1.08997 * 109.46894 * 329.97302 * 1 2 3 29 29 H 1.08004 * 125.03975 * 0.03436 * 3 2 1 30 30 H 1.08007 * 126.49288 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.06560 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.76936 * 180.02562 * 7 6 5 33 33 H 0.97002 * 119.99122 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.46786 * 59.99969 * 10 9 8 35 35 H 1.08996 * 109.47381 * 300.00167 * 10 9 8 36 36 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 37 37 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.14205 * 179.70351 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.1213 0.0000 4 6 3.5473 0.7704 0.0006 5 6 3.5948 -0.6945 0.0016 6 6 4.6320 -1.6300 0.0029 7 6 4.3440 -2.9644 0.0042 8 6 3.0198 -3.4017 0.0035 9 7 2.7418 -4.7718 0.0043 10 6 3.8395 -5.7420 0.0051 11 6 3.2663 -7.1605 0.0065 12 1 2.5836 -7.2759 0.8483 13 6 2.5386 -7.3969 -1.2511 14 7 1.9779 -7.5774 -2.2281 15 6 4.4075 -8.1716 0.1331 16 6 3.8365 -9.5607 0.2578 17 1 2.7665 -9.7077 0.2475 18 6 4.6801 -10.6446 0.3790 19 7 5.9829 -10.4656 0.3913 20 14 3.9724 -12.3670 0.5260 21 1 3.8160 -12.9552 -0.8286 22 1 4.8911 -13.2127 1.3297 23 1 2.6475 -12.3026 1.1936 24 6 1.9790 -2.4898 -0.0037 25 6 2.2563 -1.1270 0.0005 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 1.8849 2.1369 0.0005 30 1 4.3944 1.4405 0.0003 31 1 5.6598 -1.2983 0.0038 32 1 5.1472 -3.6864 0.0056 33 1 1.8220 -5.0799 0.0035 34 1 4.4517 -5.5971 0.8952 35 1 4.4523 -5.5982 -0.8847 36 1 5.0002 -7.9416 1.0185 37 1 5.0409 -8.1174 -0.7523 38 1 6.5764 -11.2281 0.4769 39 1 0.9557 -2.8350 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580889191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = 80.153218 kcal Electronic energy + Delta-G solvation = -20436.720558 eV Core-core repulsion = 17344.412061 eV Total energy + Delta-G solvation = -3092.308497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14634 -38.32006 -36.64046 -34.62505 -33.58845 -32.56140 -31.35852 -30.26963 -28.02265 -26.46228 -26.01107 -23.59276 -22.60232 -21.79288 -20.90183 -19.97760 -17.35166 -17.10926 -16.64391 -16.51265 -15.72400 -15.35424 -14.95951 -14.53025 -14.17912 -13.99085 -13.54808 -13.34195 -13.19259 -12.96013 -12.84419 -12.69922 -12.49595 -12.29313 -12.06242 -11.60886 -11.47515 -11.26522 -11.11401 -10.87464 -10.73968 -10.61719 -10.37175 -9.83017 -9.69164 -9.32496 -8.98927 -8.50997 -7.77791 -6.94195 -6.15209 -4.19040 1.34910 1.87756 2.78559 2.79388 3.26350 3.33320 3.35580 3.44685 3.49201 3.67352 4.10762 4.36319 4.59755 4.65840 4.78309 4.86354 4.98121 5.17979 5.22995 5.27873 5.29253 5.44331 5.50799 5.61475 5.63165 5.74990 5.94154 5.97820 6.09996 6.23987 6.32929 6.43976 6.66230 6.72082 6.90403 7.21107 7.33987 7.34572 7.43214 7.52260 7.79007 7.88573 8.15018 8.31214 8.84955 9.46856 10.95574 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.002899 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.359885 B = 9654.649089 C =10155.843246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.495 5.495 3 C 0.024 3.976 4 C -0.189 4.189 5 C -0.168 4.168 6 C -0.026 4.026 7 C -0.205 4.205 8 C 0.249 3.751 9 N -0.746 5.746 10 C 0.131 3.869 11 C -0.002 4.002 12 H 0.108 0.892 13 C 0.237 3.763 14 N -0.468 5.468 15 C 0.034 3.966 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.231 4.231 25 C 0.147 3.853 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.141 0.859 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.397 0.603 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 22.197 2.515 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.180 5.180 3 C -0.099 4.099 4 C -0.214 4.214 5 C -0.173 4.173 6 C -0.046 4.046 7 C -0.227 4.227 8 C 0.143 3.857 9 N -0.375 5.375 10 C 0.006 3.994 11 C -0.024 4.024 12 H 0.126 0.874 13 C -0.079 4.079 14 N -0.145 5.145 15 C -0.005 4.005 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.258 4.258 25 C 0.041 3.959 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.232 0.768 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.066 21.730 1.056 22.875 hybrid contribution -0.597 -1.125 0.393 1.333 sum -7.663 20.606 1.449 22.032 Atomic orbital electron populations 1.21847 0.77783 1.03786 1.02594 1.43767 1.05478 1.04396 1.64406 1.21612 0.90540 0.90678 1.07116 1.21601 0.95648 0.93093 1.11049 1.19003 0.92139 0.93267 1.12884 1.20037 0.97656 0.91421 0.95445 1.20326 0.94753 0.96014 1.11618 1.17366 0.92722 0.83497 0.92092 1.44897 1.08776 1.02049 1.81734 1.21537 0.89385 0.85883 1.02549 1.19484 0.99090 0.95464 0.88347 0.87442 1.29329 0.92506 0.91601 0.94509 1.81245 1.11239 1.10137 1.11873 1.19157 0.90784 0.91475 0.99055 1.21105 0.93071 0.91169 1.51437 0.92506 1.24948 0.94799 0.99315 0.94837 1.69933 1.02120 1.31158 1.49560 0.86578 0.79028 0.84190 0.78197 1.20640 1.21020 1.19755 1.19081 0.97902 0.88971 1.19859 1.17832 0.89845 0.87492 1.00776 0.91729 0.90328 0.90338 0.82196 0.84138 0.86117 0.85526 0.76840 0.90057 0.91572 0.93918 0.95294 0.92680 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.03 59.85 0.66 1.25 16 2 N -0.50 -5.38 3.18 -121.79 -0.39 -5.77 16 3 C 0.02 0.23 11.29 -16.67 -0.19 0.04 16 4 C -0.19 -2.08 11.08 -37.66 -0.42 -2.50 16 5 C -0.17 -2.23 6.37 -105.09 -0.67 -2.90 16 6 C -0.03 -0.33 10.04 -39.67 -0.40 -0.73 16 7 C -0.20 -2.72 9.23 -39.75 -0.37 -3.08 16 8 C 0.25 3.42 6.65 -83.72 -0.56 2.87 16 9 N -0.75 -9.99 5.52 -58.60 -0.32 -10.31 16 10 C 0.13 1.87 4.26 -4.04 -0.02 1.85 16 11 C 0.00 -0.03 2.26 -93.41 -0.21 -0.24 16 12 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 13 C 0.24 4.65 13.47 -20.60 -0.28 4.38 16 14 N -0.47 -10.09 18.57 42.34 0.79 -9.31 16 15 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 16 C -0.53 -13.69 8.60 -34.44 -0.30 -13.99 16 17 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.23 -3.08 9.79 -39.22 -0.38 -3.46 16 25 C 0.15 1.97 6.80 -84.00 -0.57 1.39 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.55 6.68 -52.48 -0.35 1.20 16 33 H 0.40 5.04 8.22 -40.82 -0.34 4.70 16 34 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 35 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -31.38 339.87 -8.27 -39.65 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.27 Total: 1.81 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.91 Total: -12.89 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.81 Total: -49.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.38 -8.27 -39.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580889191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.801 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds