Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37006 * 125.07552 * 2 1 4 4 C 1.34173 * 109.91706 * 179.97438 * 3 2 1 5 5 C 1.46568 * 107.01555 * 359.97438 * 4 3 2 6 6 C 1.39673 * 133.90582 * 180.02562 * 5 4 3 7 7 C 1.36517 * 119.86783 * 179.97438 * 6 5 4 8 8 C 1.39447 * 120.45511 * 0.02562 * 7 6 5 9 9 N 1.39804 * 119.74445 * 179.97438 * 8 7 6 10 10 C 1.46500 * 120.00273 * 359.97438 * 9 8 7 11 11 C 1.52996 * 109.46949 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00252 * 11 10 9 13 13 C 1.47204 * 109.47042 * 65.00020 * 11 10 9 14 14 N 7.91479 * 93.71592 * 196.38584 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99976 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.38374 * 120.50386 * 0.25577 * 8 7 6 25 25 C 1.37706 * 125.07481 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.47036 * 89.98010 * 1 2 3 27 27 H 1.08996 * 109.46919 * 209.97821 * 1 2 3 28 28 H 1.08997 * 109.46894 * 329.97302 * 1 2 3 29 29 H 1.08004 * 125.03975 * 0.03436 * 3 2 1 30 30 H 1.08007 * 126.49288 * 179.97438 * 4 3 2 31 31 H 1.08000 * 120.06560 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.76936 * 180.02562 * 7 6 5 33 33 H 0.97002 * 119.99122 * 180.02562 * 9 8 7 34 34 H 1.08997 * 109.46786 * 59.99969 * 10 9 8 35 35 H 1.08996 * 109.47381 * 300.00167 * 10 9 8 36 36 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 37 37 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.07995 * 120.14205 * 179.70351 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.1213 0.0000 4 6 3.5473 0.7704 0.0006 5 6 3.5948 -0.6945 0.0016 6 6 4.6320 -1.6300 0.0029 7 6 4.3440 -2.9644 0.0042 8 6 3.0198 -3.4017 0.0035 9 7 2.7418 -4.7718 0.0043 10 6 3.8395 -5.7420 0.0051 11 6 3.2663 -7.1605 0.0065 12 1 2.5836 -7.2759 0.8483 13 6 2.5386 -7.3969 -1.2511 14 7 1.9779 -7.5774 -2.2281 15 6 4.4075 -8.1716 0.1331 16 6 3.8365 -9.5607 0.2578 17 1 2.7665 -9.7077 0.2475 18 6 4.6801 -10.6446 0.3790 19 7 5.9829 -10.4656 0.3913 20 14 3.9724 -12.3670 0.5260 21 1 3.8160 -12.9552 -0.8286 22 1 4.8911 -13.2127 1.3297 23 1 2.6475 -12.3026 1.1936 24 6 1.9790 -2.4898 -0.0037 25 6 2.2563 -1.1270 0.0005 26 1 -0.3633 0.0004 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 1.8849 2.1369 0.0005 30 1 4.3944 1.4405 0.0003 31 1 5.6598 -1.2983 0.0038 32 1 5.1472 -3.6864 0.0056 33 1 1.8220 -5.0799 0.0035 34 1 4.4517 -5.5971 0.8952 35 1 4.4523 -5.5982 -0.8847 36 1 5.0002 -7.9416 1.0185 37 1 5.0409 -8.1174 -0.7523 38 1 6.5764 -11.2281 0.4769 39 1 0.9557 -2.8350 -0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580889191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = 63.506342 kcal Electronic energy + Delta-G solvation = -20437.442421 eV Core-core repulsion = 17344.412061 eV Total energy + Delta-G solvation = -3093.030359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99032 -39.44008 -37.98978 -35.97173 -35.20178 -33.76277 -32.65177 -31.18518 -29.31542 -27.60201 -27.01854 -24.91778 -23.91026 -23.17926 -21.84555 -20.82002 -18.74490 -18.40604 -17.91560 -17.72478 -16.79732 -16.59651 -16.09169 -15.87828 -15.25949 -15.03497 -14.72458 -14.62963 -14.27606 -14.22601 -14.03537 -13.83935 -13.64338 -13.50982 -13.16163 -13.09749 -12.97486 -12.64042 -12.44464 -12.40040 -12.25762 -11.97266 -11.71107 -11.48939 -11.21269 -10.77149 -10.55731 -9.90571 -8.67010 -8.19912 -7.89692 -6.27975 0.42641 0.90942 1.40186 1.42780 1.51280 1.86904 1.90168 1.97451 2.03714 2.40490 2.61507 3.12122 3.14796 3.19061 3.91849 3.97001 4.05552 4.15859 4.30239 4.35108 4.48866 4.56246 4.57940 4.71293 4.72553 4.75839 4.86007 4.88542 4.95651 5.12957 5.23030 5.44215 5.46780 5.60224 5.71947 5.77909 5.81443 6.03045 6.16578 6.30067 6.52095 6.60138 6.70690 6.85032 6.89873 7.40647 8.90968 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.002899 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.359885 B = 9654.649089 C =10155.843246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.499 5.499 3 C 0.034 3.966 4 C -0.212 4.212 5 C -0.189 4.189 6 C -0.034 4.034 7 C -0.218 4.218 8 C 0.233 3.767 9 N -0.745 5.745 10 C 0.144 3.856 11 C 0.012 3.988 12 H 0.130 0.870 13 C 0.250 3.750 14 N -0.503 5.503 15 C 0.039 3.961 16 C -0.540 4.540 17 H 0.056 0.944 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.947 3.053 21 H -0.285 1.285 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.237 4.237 25 C 0.123 3.877 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.199 0.801 30 H 0.159 0.841 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 23.794 3.184 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.184 5.184 3 C -0.090 4.090 4 C -0.237 4.237 5 C -0.195 4.195 6 C -0.053 4.053 7 C -0.240 4.240 8 C 0.128 3.872 9 N -0.375 5.375 10 C 0.019 3.981 11 C -0.009 4.009 12 H 0.147 0.853 13 C -0.066 4.066 14 N -0.180 5.180 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.074 0.926 18 C -0.187 4.187 19 N -0.562 5.562 20 Si 0.773 3.227 21 H -0.211 1.211 22 H -0.205 1.205 23 H -0.188 1.188 24 C -0.264 4.264 25 C 0.015 3.985 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.216 0.784 30 H 0.176 0.824 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.235 0.765 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.222 23.348 1.730 24.813 hybrid contribution -0.281 -1.498 0.175 1.535 sum -8.503 21.849 1.904 23.523 Atomic orbital electron populations 1.22101 0.75773 1.05199 1.03516 1.44109 1.06866 1.03927 1.63493 1.22274 0.90159 0.91900 1.04624 1.21926 0.97144 0.92263 1.12331 1.19461 0.92438 0.94755 1.12817 1.20298 0.98664 0.91286 0.95046 1.20482 0.94826 0.96560 1.12178 1.17478 0.93167 0.83455 0.93075 1.44717 1.08538 1.01862 1.82373 1.21330 0.89455 0.84205 1.03096 1.19388 0.97615 0.95958 0.87983 0.85252 1.29747 0.91810 0.90557 0.94503 1.81248 1.12510 1.11285 1.12977 1.18973 0.91873 0.91345 0.97796 1.21540 0.93099 0.92947 1.50210 0.92611 1.25693 0.95172 1.02820 0.95027 1.70025 1.03122 1.32050 1.50958 0.85713 0.78805 0.80323 0.77855 1.21135 1.20451 1.18809 1.19218 0.98218 0.89272 1.19665 1.18072 0.90703 0.88179 1.01529 0.91011 0.90373 0.87575 0.78377 0.82353 0.84371 0.85044 0.76493 0.88543 0.92133 0.93963 0.97678 0.92681 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 11.03 127.77 1.41 2.30 16 2 N -0.50 -9.85 3.18 -539.22 -1.72 -11.57 16 3 C 0.03 0.57 11.29 82.96 0.94 1.50 16 4 C -0.21 -4.31 11.08 23.52 0.26 -4.05 16 5 C -0.19 -4.88 6.37 -20.17 -0.13 -5.01 16 6 C -0.03 -0.84 10.04 22.21 0.22 -0.62 16 7 C -0.22 -5.73 9.23 22.16 0.20 -5.52 16 8 C 0.23 6.31 6.65 38.19 0.25 6.57 16 9 N -0.75 -19.37 5.52 -339.31 -1.87 -21.24 16 10 C 0.14 3.98 4.26 86.38 0.37 4.35 16 11 C 0.01 0.41 2.26 -12.60 -0.03 0.39 16 12 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 13 C 0.25 9.68 13.47 89.39 1.20 10.88 16 14 N -0.50 -21.59 18.57 20.07 0.37 -21.21 16 15 C 0.04 1.72 4.42 29.85 0.13 1.85 16 16 C -0.54 -27.74 8.60 25.60 0.22 -27.52 16 17 H 0.06 2.82 7.59 -2.91 -0.02 2.80 16 18 C 0.01 0.65 5.46 84.66 0.46 1.11 16 19 N -0.92 -52.08 13.29 21.45 0.28 -51.79 16 20 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C -0.24 -6.20 9.79 22.50 0.22 -5.98 16 25 C 0.12 3.17 6.80 39.02 0.27 3.44 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.13 3.18 6.68 -2.91 -0.02 3.16 16 33 H 0.40 9.79 8.22 -92.71 -0.76 9.03 16 34 H 0.10 2.40 7.93 -2.39 -0.02 2.38 16 35 H 0.06 1.75 7.93 -2.39 -0.02 1.73 16 36 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 39 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -67.02 339.87 5.40 -61.62 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.30 Total: 15.72 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 6.00 Total: -16.30 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -2.93 Total: -105.82 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.02 5.40 -61.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580889191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.130 kcal (2) G-P(sol) polarization free energy of solvation -67.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds