Wall clock time and date at job start Tue Mar 31 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36956 * 125.07568 * 2 1 4 4 C 1.34214 * 109.88190 * 180.02562 * 3 2 1 5 5 C 1.46463 * 106.99308 * 0.02562 * 4 3 2 6 6 C 1.37697 * 125.06518 * 180.02562 * 2 1 3 7 7 C 1.39210 * 133.36502 * 359.95781 * 6 2 1 8 8 C 1.37785 * 120.06241 * 179.97438 * 7 6 2 9 9 C 1.38700 * 120.73818 * 0.02562 * 8 7 6 10 10 C 1.38369 * 120.29227 * 0.02562 * 9 8 7 11 11 N 1.39572 * 120.23812 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99885 * 0.02562 * 11 10 9 13 13 C 1.53005 * 109.46567 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.47167 * 304.99502 * 13 12 11 15 15 C 1.47198 * 109.47170 * 65.00284 * 13 12 11 16 16 N 7.54382 * 162.79391 * 94.04222 * 2 1 3 17 17 C 1.53003 * 109.46620 * 184.99840 * 13 12 11 18 18 C 1.50698 * 109.47012 * 175.00074 * 17 13 12 19 19 H 1.08000 * 120.00101 * 0.02562 * 18 17 13 20 20 C 1.37881 * 120.00107 * 179.97438 * 18 17 13 21 21 N 1.31509 * 119.99776 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99681 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47236 * 90.00176 * 22 20 18 24 24 H 1.48508 * 109.46941 * 209.99696 * 22 20 18 25 25 H 1.48492 * 109.47631 * 329.99847 * 22 20 18 26 26 H 1.08997 * 109.47272 * 89.97237 * 1 2 3 27 27 H 1.08997 * 109.47351 * 209.97718 * 1 2 3 28 28 H 1.09000 * 109.46689 * 329.97373 * 1 2 3 29 29 H 1.07997 * 125.05844 * 0.05641 * 3 2 1 30 30 H 1.08000 * 126.50127 * 180.02562 * 4 3 2 31 31 H 1.07997 * 119.96801 * 0.26342 * 7 6 2 32 32 H 1.08001 * 119.63101 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.85435 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99489 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47113 * 299.99570 * 12 11 10 36 36 H 1.08990 * 109.47222 * 59.99950 * 12 11 10 37 37 H 1.08998 * 109.47386 * 295.00107 * 17 13 12 38 38 H 1.08997 * 109.47447 * 54.99866 * 17 13 12 39 39 H 0.97005 * 119.99898 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2520 1.1208 0.0000 4 6 3.5472 0.7691 -0.0006 5 6 3.5932 -0.6948 -0.0016 6 6 2.2561 -1.1271 -0.0005 7 6 1.9769 -2.4909 -0.0004 8 6 3.0067 -3.4062 -0.0015 9 6 4.3286 -2.9862 -0.0023 10 6 4.6319 -1.6361 -0.0014 11 7 5.9625 -1.2147 -0.0017 12 6 7.0439 -2.2030 -0.0035 13 6 8.3934 -1.4821 -0.0041 14 1 8.4355 -0.7904 -0.8453 15 6 8.5511 -0.7348 1.2542 16 7 8.6712 -0.1573 2.2260 17 6 9.5202 -2.5094 -0.1316 18 6 10.8406 -1.7938 -0.2557 19 1 10.8730 -0.7144 -0.2442 20 6 12.0075 -2.5172 -0.3828 21 7 13.1597 -1.8927 -0.4915 22 14 11.9515 -4.3843 -0.4019 23 1 11.7964 -4.8606 -1.7998 24 1 13.2127 -4.9232 0.1676 25 1 10.8010 -4.8534 0.4114 26 1 -0.3634 0.0005 -1.0276 27 1 -0.3634 -0.8902 0.5135 28 1 -0.3633 0.8898 0.5143 29 1 1.8850 2.1365 0.0009 30 1 4.3947 1.4385 -0.0003 31 1 0.9521 -2.8317 -0.0041 32 1 2.7821 -4.4626 -0.0019 33 1 5.1246 -3.7160 -0.0028 34 1 6.1711 -0.2674 -0.0014 35 1 6.9660 -2.8284 0.8858 36 1 6.9649 -2.8263 -0.8941 37 1 9.5335 -3.1458 0.7531 38 1 9.3544 -3.1224 -1.0176 39 1 13.9807 -2.4017 -0.5813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583560294.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:15 Heat of formation + Delta-G solvation = 83.510932 kcal Electronic energy + Delta-G solvation = -20692.635900 eV Core-core repulsion = 17600.473005 eV Total energy + Delta-G solvation = -3092.162895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22765 -38.19015 -36.71012 -34.85428 -33.64893 -32.70370 -31.73488 -29.25688 -28.71761 -26.63742 -26.35571 -23.67276 -22.26416 -21.55694 -21.26944 -19.79131 -17.75747 -16.97399 -16.87927 -16.36565 -15.63875 -15.42533 -15.27441 -14.81634 -14.18109 -13.95937 -13.50161 -13.33964 -13.26861 -13.18638 -12.74457 -12.65195 -12.50134 -12.40402 -12.24159 -11.65123 -11.40421 -11.36834 -11.19298 -11.14441 -10.87302 -10.49197 -10.12833 -10.06393 -9.84769 -9.39156 -8.65637 -8.59265 -8.14814 -6.86734 -6.14478 -4.16046 1.39875 1.79278 2.74811 2.75226 3.24265 3.33373 3.33953 3.43660 3.49126 3.63638 4.07464 4.35294 4.54915 4.58946 4.75220 4.84882 4.92287 5.12251 5.14907 5.20106 5.24112 5.26923 5.51252 5.53325 5.63797 5.73544 5.87557 5.99898 6.00227 6.10768 6.18318 6.41259 6.69186 6.71483 6.79848 6.85207 7.04425 7.12906 7.33353 7.49184 7.59080 7.84534 8.27952 8.37074 8.87917 9.44793 10.98464 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029378 B = 0.003361 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.865968 B = 8329.398741 C = 8994.019646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.492 5.492 3 C 0.025 3.975 4 C -0.183 4.183 5 C -0.175 4.175 6 C 0.141 3.859 7 C -0.205 4.205 8 C -0.041 4.041 9 C -0.244 4.244 10 C 0.276 3.724 11 N -0.739 5.739 12 C 0.128 3.872 13 C 0.007 3.993 14 H 0.113 0.887 15 C 0.235 3.765 16 N -0.458 5.458 17 C -0.002 4.002 18 C -0.531 4.531 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.878 3.122 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.263 1.263 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.789 0.046 -2.037 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.177 5.177 3 C -0.098 4.098 4 C -0.209 4.209 5 C -0.183 4.183 6 C 0.034 3.966 7 C -0.228 4.228 8 C -0.061 4.061 9 C -0.269 4.269 10 C 0.170 3.830 11 N -0.365 5.365 12 C 0.003 3.997 13 C -0.014 4.014 14 H 0.131 0.869 15 C -0.082 4.082 16 N -0.135 5.135 17 C -0.041 4.041 18 C -0.569 4.569 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.533 5.533 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.213 1.213 25 H -0.187 1.187 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.180 0.820 30 H 0.159 0.841 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.584 0.804 -0.583 25.604 hybrid contribution 0.242 -0.690 -0.397 0.832 sum -25.343 0.113 -0.980 25.362 Atomic orbital electron populations 1.21852 0.77629 1.03831 1.02626 1.43789 1.05555 1.04449 1.63863 1.21614 0.90386 0.90810 1.07004 1.21527 0.95903 0.92786 1.10637 1.18625 0.91600 0.92986 1.15059 1.17972 0.89144 0.88053 1.01429 1.19620 0.98937 0.88942 1.15288 1.20474 0.91537 0.98329 0.95778 1.20342 0.96988 0.93181 1.16408 1.17229 0.82930 0.91890 0.90994 1.44821 1.02235 1.08900 1.80566 1.21573 0.84179 0.91372 1.02589 1.19216 0.95608 0.97617 0.89007 0.86912 1.28974 0.91824 0.92990 0.94448 1.81088 1.09727 1.10562 1.12100 1.19615 0.92661 0.93755 0.98104 1.20990 0.89062 0.95144 1.51668 0.90786 1.24987 0.95308 0.98609 0.94165 1.69901 0.98078 1.36017 1.49353 0.86812 0.77979 0.85927 0.78845 1.19927 1.21290 1.18743 0.91626 0.90311 0.90283 0.81977 0.84130 0.87281 0.86156 0.85860 0.76556 0.91460 0.90013 0.95391 0.94443 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.03 59.85 0.66 1.18 16 2 N -0.49 -5.18 3.18 -121.79 -0.39 -5.57 16 3 C 0.03 0.26 11.29 -16.68 -0.19 0.07 16 4 C -0.18 -2.24 10.86 -37.69 -0.41 -2.64 16 5 C -0.18 -2.44 6.27 -105.00 -0.66 -3.10 16 6 C 0.14 1.82 6.80 -84.01 -0.57 1.24 16 7 C -0.20 -2.39 9.94 -39.39 -0.39 -2.78 16 8 C -0.04 -0.48 10.00 -39.58 -0.40 -0.87 16 9 C -0.24 -3.16 9.31 -39.36 -0.37 -3.53 16 10 C 0.28 3.86 6.68 -83.56 -0.56 3.30 16 11 N -0.74 -10.00 5.52 -58.46 -0.32 -10.32 16 12 C 0.13 1.75 4.28 -4.04 -0.02 1.74 16 13 C 0.01 0.13 2.26 -93.40 -0.21 -0.09 16 14 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 15 C 0.24 4.62 13.45 -20.74 -0.28 4.34 16 16 N -0.46 -9.99 18.54 42.18 0.78 -9.21 16 17 C 0.00 -0.05 3.49 -27.88 -0.10 -0.15 16 18 C -0.53 -13.98 9.15 -34.44 -0.32 -14.30 16 19 H 0.07 2.14 7.84 -52.49 -0.41 1.73 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 22 Si 0.88 20.29 27.47 -169.99 -4.67 15.62 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.11 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.46 6.72 -52.49 -0.35 1.11 16 34 H 0.40 5.28 8.04 -40.82 -0.33 4.95 16 35 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 36 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 37 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 38 H 0.04 0.71 7.57 -51.93 -0.39 0.32 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -32.85 336.05 -7.89 -40.74 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.23 Total: 3.34 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -3.90 Total: -13.70 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.85 Total: -51.06 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.85 -7.89 -40.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583560294.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.248 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds