Wall clock time and date at job start Tue Mar 31 2020 05:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38321 * 119.87953 * 2 1 4 4 C 1.38024 * 120.11558 * 180.02562 * 3 2 1 5 5 C 1.39312 * 119.88285 * 359.97438 * 4 3 2 6 6 C 1.48446 * 120.11892 * 180.02562 * 5 4 3 7 7 C 1.36494 * 126.90439 * 180.24100 * 6 5 4 8 8 N 1.35207 * 106.04528 * 180.12656 * 7 6 5 9 9 C 1.46496 * 125.75595 * 179.90217 * 8 7 6 10 10 C 1.53007 * 109.47036 * 123.86300 * 9 8 7 11 11 C 1.50695 * 115.55955 * 320.13084 * 10 9 8 12 12 H 1.08011 * 119.99825 * 97.25071 * 11 10 9 13 13 C 1.37879 * 120.00396 * 277.24685 * 11 10 9 14 14 N 1.31516 * 119.99883 * 8.47121 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 188.46530 * 13 11 10 16 16 H 1.48503 * 109.46852 * 60.00629 * 15 13 11 17 17 H 1.48498 * 109.46695 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47245 * 300.00542 * 15 13 11 19 19 C 1.52998 * 117.49667 * 105.82039 * 10 9 8 20 20 C 1.52999 * 117.49645 * 174.44439 * 10 9 8 21 21 N 1.28655 * 108.49659 * 359.65046 * 8 7 6 22 22 N 1.28613 * 110.48493 * 0.21852 * 21 8 7 23 23 C 1.39321 * 119.76308 * 0.27590 * 5 4 3 24 24 C 1.38028 * 119.87479 * 359.44914 * 23 5 4 25 25 H 1.09002 * 109.47170 * 90.00237 * 1 2 3 26 26 H 1.09002 * 109.47586 * 210.00157 * 1 2 3 27 27 H 1.09006 * 109.47200 * 330.00814 * 1 2 3 28 28 H 1.07994 * 119.94306 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.06091 * 179.97438 * 4 3 2 30 30 H 1.07997 * 126.97581 * 359.97438 * 7 6 5 31 31 H 1.09001 * 109.46846 * 3.87185 * 9 8 7 32 32 H 1.09000 * 109.47939 * 243.86865 * 9 8 7 33 33 H 0.96996 * 119.99539 * 174.97313 * 14 13 11 34 34 H 1.08999 * 117.49651 * 214.98143 * 19 10 9 35 35 H 1.09004 * 117.49972 * 0.02562 * 19 10 9 36 36 H 1.08994 * 117.50350 * 0.02562 * 20 10 9 37 37 H 1.08999 * 117.49345 * 145.02391 * 20 10 9 38 38 H 1.07998 * 120.06029 * 179.70225 * 23 5 4 39 39 H 1.08001 * 119.93608 * 180.25122 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1993 0.0000 4 6 3.5763 1.2050 -0.0005 5 6 4.2753 0.0000 -0.0005 6 6 5.7598 0.0000 -0.0005 7 6 6.5794 -1.0914 -0.0051 8 7 7.8429 -0.6100 -0.0002 9 6 9.0661 -1.4161 -0.0005 10 6 9.9371 -1.0209 -1.1948 11 6 9.1961 -0.7510 -2.4789 12 1 8.9502 0.2632 -2.7575 13 6 8.8320 -1.7986 -3.2981 14 7 8.9803 -3.0384 -2.8853 15 14 8.1281 -1.4568 -4.9943 16 1 9.1209 -0.7004 -5.7990 17 1 7.8199 -2.7425 -5.6705 18 1 6.8846 -0.6558 -4.8621 19 6 11.1873 -0.1857 -0.9115 20 6 11.3235 -1.6594 -1.2999 21 7 7.7898 0.6754 -0.0007 22 7 6.5675 1.0755 -0.0009 23 6 3.5763 -1.2051 -0.0058 24 6 2.1960 -1.1993 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 1.6532 2.1329 -0.0004 29 1 4.1134 2.1420 -0.0010 30 1 6.2796 -2.1289 -0.0091 31 1 8.8054 -2.4719 -0.0747 32 1 9.6164 -1.2419 0.9241 33 1 8.6575 -3.7729 -3.4304 34 1 11.4738 0.5591 -1.6541 35 1 11.3896 0.0819 0.1256 36 1 11.6150 -2.3612 -0.5187 37 1 11.6996 -1.8840 -2.2980 38 1 4.1133 -2.1421 -0.0107 39 1 1.6531 -2.1329 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594652162.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:16 Heat of formation + Delta-G solvation = 135.525283 kcal Electronic energy + Delta-G solvation = -21396.265008 eV Core-core repulsion = 18306.357624 eV Total energy + Delta-G solvation = -3089.907384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.38740 -39.01888 -36.95794 -33.78681 -32.69607 -32.11399 -30.82569 -30.01028 -27.26223 -26.37397 -25.53037 -22.80757 -22.32030 -21.27609 -20.88512 -20.37992 -19.26701 -17.29996 -15.98979 -15.55751 -15.32535 -15.14247 -14.96513 -14.70831 -14.00762 -13.76583 -13.60737 -13.25218 -13.17476 -13.14011 -12.25760 -12.25220 -12.01627 -11.81738 -11.32968 -11.11091 -11.01493 -10.89886 -10.73330 -10.64163 -10.38246 -10.19429 -10.05043 -9.42527 -9.08343 -9.02360 -8.76972 -8.60738 -8.32113 -7.70001 -6.22683 -4.27374 1.25002 1.59370 2.51337 3.23248 3.24538 3.27208 3.27959 3.34025 4.16933 4.29835 4.73273 4.90561 4.97141 5.04972 5.08380 5.16378 5.26277 5.46723 5.53801 5.59984 5.63919 5.68307 5.75064 5.78321 5.92196 6.02233 6.14763 6.21223 6.25156 6.35121 6.40778 6.59334 6.65280 6.71062 6.83274 6.87166 6.92793 7.09088 7.16451 7.28567 7.46950 7.74803 8.22433 8.76627 9.30753 9.40664 10.85836 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.004801 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.002848 B = 5830.174147 C = 6592.655120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.095 4.095 5 C 0.013 3.987 6 C -0.012 4.012 7 C -0.022 4.022 8 N -0.237 5.237 9 C 0.150 3.850 10 C 0.029 3.971 11 C -0.491 4.491 12 H 0.061 0.939 13 C 0.077 3.923 14 N -0.882 5.882 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.197 4.197 20 C -0.152 4.152 21 N -0.064 5.064 22 N -0.280 5.280 23 C -0.107 4.107 24 C -0.119 4.119 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.180 0.820 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.263 0.737 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 0.301 7.090 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.114 4.114 5 C 0.011 3.989 6 C -0.150 4.150 7 C -0.175 4.175 8 N -0.027 5.027 9 C 0.029 3.971 10 C 0.028 3.972 11 C -0.529 4.529 12 H 0.079 0.921 13 C -0.127 4.127 14 N -0.518 5.518 15 Si 0.714 3.286 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.235 4.235 20 C -0.190 4.190 21 N -0.044 5.044 22 N -0.147 5.147 23 C -0.127 4.127 24 C -0.137 4.137 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.148 0.852 30 H 0.197 0.803 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.830 1.395 7.011 12.154 hybrid contribution -0.765 -1.190 -1.155 1.826 sum -10.595 0.205 5.856 12.107 Atomic orbital electron populations 1.20757 0.91555 1.02407 1.02056 1.19900 0.95808 0.93302 1.00860 1.20927 0.93931 0.97366 1.01646 1.21208 0.93681 0.97997 0.98487 1.17728 0.88205 0.93521 0.99442 1.20174 0.93569 0.89964 1.11248 1.23322 0.84320 1.00932 1.08957 1.47042 1.07572 1.05685 1.42403 1.21912 0.81800 0.93962 0.99442 1.18901 0.86006 0.99093 0.93213 1.20308 1.37205 0.93286 1.02073 0.92098 1.24928 0.94821 0.94982 0.97931 1.69916 1.45359 0.98298 1.38260 0.86710 0.79796 0.77638 0.84422 1.19960 1.21096 1.20086 1.23046 1.06421 0.94503 0.99489 1.22601 1.02291 0.93287 1.00853 1.78109 1.14653 0.93491 1.18173 1.75146 0.95747 1.25735 1.18032 1.21100 0.94047 0.97238 1.00278 1.20851 0.93747 0.97395 1.01712 0.91445 0.91798 0.91799 0.86182 0.85189 0.80281 0.87725 0.91103 0.92727 0.90017 0.91249 0.91484 0.89642 0.85819 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.10 -1.18 5.88 -104.57 -0.62 -1.80 16 3 C -0.12 -1.56 9.68 -39.63 -0.38 -1.94 16 4 C -0.09 -1.47 9.71 -39.26 -0.38 -1.85 16 5 C 0.01 0.22 5.88 -104.89 -0.62 -0.39 16 6 C -0.01 -0.24 6.99 -83.12 -0.58 -0.82 16 7 C -0.02 -0.42 10.96 -16.69 -0.18 -0.61 16 8 N -0.24 -5.01 2.78 -60.99 -0.17 -5.18 16 9 C 0.15 3.02 6.52 -4.04 -0.03 2.99 16 10 C 0.03 0.66 1.52 -155.66 -0.24 0.42 16 11 C -0.49 -12.90 8.06 -34.44 -0.28 -13.17 16 12 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 13 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 14 N -0.88 -23.02 13.09 55.43 0.73 -22.29 16 15 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.20 -4.07 9.88 -26.73 -0.26 -4.34 16 20 C -0.15 -3.22 9.66 -26.73 -0.26 -3.48 16 21 N -0.06 -1.47 12.82 60.35 0.77 -0.69 16 22 N -0.28 -6.18 12.16 33.06 0.40 -5.78 16 23 C -0.11 -1.55 9.58 -39.26 -0.38 -1.92 16 24 C -0.12 -1.48 9.68 -39.63 -0.38 -1.87 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 2.04 7.90 -52.48 -0.41 1.63 16 30 H 0.18 2.89 7.41 -52.49 -0.39 2.50 16 31 H 0.10 2.08 8.06 -51.93 -0.42 1.66 16 32 H 0.07 1.25 7.95 -51.93 -0.41 0.84 16 33 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 38 H 0.12 1.59 7.12 -52.49 -0.37 1.22 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -29.17 338.63 -7.86 -37.03 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.35 Total: 3.15 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -4.32 Total: -27.47 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 1.73 Total: -33.94 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.17 -7.86 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652162.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.551 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds