Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38623 * 120.44398 * 2 1 4 4 C 1.38580 * 118.39575 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.44526 * 180.02562 * 4 3 2 6 6 N 1.46494 * 109.47421 * 94.99831 * 5 4 3 7 7 C 1.39683 * 120.00329 * 180.02562 * 6 5 4 8 8 C 1.39338 * 119.94683 * 359.72046 * 7 6 5 9 9 C 1.38473 * 120.41814 * 179.72547 * 8 7 6 10 10 C 1.37692 * 120.32823 * 0.55271 * 9 8 7 11 11 C 1.40745 * 119.89375 * 359.72734 * 10 9 8 12 12 C 1.41403 * 120.20907 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00006 * 150.19537 * 12 11 10 14 14 C 1.39924 * 120.00261 * 330.19018 * 12 11 10 15 15 N 1.30829 * 120.00650 * 161.72847 * 14 12 11 16 16 Si 1.86801 * 119.99868 * 341.73308 * 14 12 11 17 17 H 1.48495 * 109.47475 * 95.41073 * 16 14 12 18 18 H 1.48500 * 109.47418 * 215.41035 * 16 14 12 19 19 H 1.48504 * 109.46919 * 335.40960 * 16 14 12 20 20 C 1.38271 * 119.95252 * 179.97438 * 7 6 5 21 21 N 1.32347 * 119.10463 * 0.27075 * 4 3 2 22 22 C 1.31782 * 120.82088 * 359.44477 * 21 4 3 23 23 C 1.50699 * 119.12538 * 180.30781 * 22 21 4 24 24 N 1.31808 * 121.75078 * 0.57336 * 22 21 4 25 25 H 1.08998 * 109.47251 * 89.99659 * 1 2 3 26 26 H 1.09000 * 109.46765 * 210.00458 * 1 2 3 27 27 H 1.09002 * 109.46697 * 329.99482 * 1 2 3 28 28 H 1.07995 * 120.80185 * 359.95605 * 3 2 1 29 29 H 1.08999 * 109.46512 * 214.99463 * 5 4 3 30 30 H 1.09000 * 109.46841 * 334.99311 * 5 4 3 31 31 H 0.97005 * 119.99686 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.79047 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.83916 * 180.27930 * 9 8 7 34 34 H 1.07997 * 120.05461 * 179.74753 * 10 9 8 35 35 H 0.96998 * 120.00437 * 180.02562 * 15 14 12 36 36 H 1.08005 * 120.16438 * 359.97287 * 20 7 6 37 37 H 1.08999 * 109.47190 * 270.26121 * 23 22 21 38 38 H 1.09005 * 109.46879 * 30.26006 * 23 22 21 39 39 H 1.08998 * 109.46786 * 150.25525 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1456 0.0005 5 6 4.4040 2.4167 0.0012 6 7 4.7673 2.7637 1.3772 7 6 5.5232 3.9103 1.6321 8 6 5.9361 4.7201 0.5761 9 6 6.6810 5.8621 0.8181 10 6 7.0317 6.2038 2.1050 11 6 6.6267 5.3923 3.1813 12 6 6.9826 5.7372 4.5057 13 1 6.3385 5.4606 5.3274 14 6 8.1693 6.4366 4.7517 15 7 8.3355 7.0638 5.8877 16 14 9.5161 6.4751 3.4579 17 1 9.3844 7.7092 2.6426 18 1 10.8432 6.4614 4.1242 19 1 9.3916 5.2851 2.5783 20 6 5.8651 4.2371 2.9314 21 7 4.1964 -0.0330 -0.0044 22 6 3.4957 -1.1491 0.0011 23 6 4.2206 -2.4703 0.0022 24 7 2.1777 -1.1406 0.0006 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6900 2.1419 -0.0007 29 1 5.3094 2.2709 -0.5879 30 1 3.8138 3.2235 -0.4333 31 1 4.4822 2.1975 2.1116 32 1 5.6694 4.4581 -0.4371 33 1 6.9923 6.4855 -0.0071 34 1 7.6162 7.0932 2.2883 35 1 9.1580 7.5490 6.0581 36 1 5.5487 3.6081 3.7504 37 1 4.3959 -2.7894 -1.0251 38 1 5.1755 -2.3604 0.5165 39 1 3.6149 -3.2166 0.5163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594704210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = 60.054076 kcal Electronic energy + Delta-G solvation = -20589.747038 eV Core-core repulsion = 17496.566977 eV Total energy + Delta-G solvation = -3093.180061 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34904 -38.15532 -35.83478 -34.64055 -33.74368 -32.82374 -30.18613 -29.52219 -29.29430 -28.06778 -25.80015 -25.05790 -22.50352 -21.94467 -21.08137 -20.10603 -17.92035 -17.54599 -16.27227 -15.92682 -15.62423 -15.48218 -14.82360 -14.58706 -14.50522 -13.86837 -13.69079 -13.25076 -13.21806 -13.09673 -12.68573 -12.53250 -12.50003 -12.44111 -12.26792 -11.85853 -11.45385 -11.05516 -10.90682 -10.76926 -10.58741 -10.40554 -9.77436 -9.53285 -9.49685 -9.41309 -9.25187 -8.91921 -7.59401 -6.87634 -6.50915 -4.43800 0.68281 0.81385 2.70278 2.91234 3.19315 3.29550 3.40348 3.41732 3.65755 3.77034 4.07118 4.08709 4.28046 4.60709 4.73842 4.81203 5.04807 5.12724 5.17333 5.26186 5.32641 5.43755 5.51074 5.55964 5.68922 5.74656 5.80268 6.03789 6.24490 6.31416 6.57368 6.79394 6.81897 6.87999 6.98134 7.30651 7.54537 7.68000 7.78600 7.94156 7.99863 8.32495 8.38368 8.49413 8.78080 8.91716 10.15193 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.003216 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.443220 B = 8703.395330 C = 8802.029991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.176 3.824 3 C -0.219 4.219 4 C 0.174 3.826 5 C 0.185 3.815 6 N -0.752 5.752 7 C 0.236 3.764 8 C -0.301 4.301 9 C -0.047 4.047 10 C -0.271 4.271 11 C 0.126 3.874 12 C -0.451 4.451 13 H 0.088 0.912 14 C 0.086 3.914 15 N -0.813 5.813 16 Si 0.914 3.086 17 H -0.271 1.271 18 H -0.294 1.294 19 H -0.244 1.244 20 C -0.275 4.275 21 N -0.508 5.508 22 C 0.319 3.681 23 C -0.084 4.084 24 N -0.523 5.523 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.149 0.851 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.391 0.609 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.284 0.716 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 -12.762 -11.985 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.029 3.971 3 C -0.242 4.242 4 C 0.027 3.973 5 C 0.059 3.941 6 N -0.386 5.386 7 C 0.137 3.863 8 C -0.324 4.324 9 C -0.066 4.066 10 C -0.291 4.291 11 C 0.122 3.878 12 C -0.480 4.480 13 H 0.106 0.894 14 C -0.133 4.133 15 N -0.438 5.438 16 Si 0.741 3.259 17 H -0.198 1.198 18 H -0.222 1.222 19 H -0.167 1.167 20 C -0.299 4.299 21 N -0.224 5.224 22 C 0.052 3.948 23 C -0.143 4.143 24 N -0.239 5.239 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.167 0.833 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.225 0.775 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.288 -13.463 -11.976 20.749 hybrid contribution 0.080 0.791 -0.162 0.811 sum -10.208 -12.673 -12.139 20.301 Atomic orbital electron populations 1.20786 0.87684 1.04179 1.03651 1.21761 0.97628 0.88052 0.89643 1.22671 0.95649 1.00754 1.05097 1.21855 0.91499 0.93921 0.89997 1.19952 0.97619 0.89446 0.87055 1.44240 1.61626 1.27871 1.04888 1.17499 0.89797 0.85056 0.93903 1.19888 1.15309 1.01496 0.95687 1.20360 0.95695 0.94930 0.95617 1.20912 1.12217 1.02800 0.93144 1.17431 0.88837 0.88714 0.92779 1.19454 1.05773 1.29711 0.93041 0.89396 1.26140 1.00012 0.90986 0.96124 1.69705 1.26689 1.22686 1.24683 0.86275 0.77929 0.81090 0.80574 1.19763 1.22189 1.16676 1.20391 1.14924 1.01660 0.92904 1.68151 1.41740 0.98250 1.14266 1.23290 0.86558 0.94773 0.90206 1.20564 1.00053 0.89815 1.03826 1.68093 1.09760 1.30489 1.15550 0.89680 0.89922 0.89940 0.83305 0.90682 0.90845 0.77549 0.88979 0.88939 0.88493 0.90595 0.88543 0.89670 0.89420 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.22 36.01 0.37 -0.37 16 2 C 0.18 1.90 6.82 -82.24 -0.56 1.34 16 3 C -0.22 -2.45 9.52 -39.31 -0.37 -2.82 16 4 C 0.17 2.30 6.19 -82.24 -0.51 1.79 16 5 C 0.18 2.62 5.26 -5.20 -0.03 2.60 16 6 N -0.75 -12.91 5.72 -59.86 -0.34 -13.26 16 7 C 0.24 4.99 6.64 -83.86 -0.56 4.44 16 8 C -0.30 -6.28 9.32 -39.09 -0.36 -6.65 16 9 C -0.05 -1.04 10.01 -39.69 -0.40 -1.44 16 10 C -0.27 -6.69 7.17 -38.83 -0.28 -6.97 16 11 C 0.13 3.28 5.10 -106.85 -0.55 2.74 16 12 C -0.45 -12.53 9.57 -37.75 -0.36 -12.89 16 13 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 14 C 0.09 2.31 5.40 -17.35 -0.09 2.21 16 15 N -0.81 -22.18 13.93 55.55 0.77 -21.41 16 16 Si 0.91 21.50 24.52 -169.99 -4.17 17.33 16 17 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.24 -5.91 6.86 56.52 0.39 -5.52 16 20 C -0.27 -6.56 9.63 -38.68 -0.37 -6.93 16 21 N -0.51 -7.19 10.27 -6.99 -0.07 -7.26 16 22 C 0.32 4.03 7.64 -157.19 -1.20 2.83 16 23 C -0.08 -0.76 10.32 36.01 0.37 -0.39 16 24 N -0.52 -6.44 10.27 -6.98 -0.07 -6.51 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.07 0.94 7.87 -51.93 -0.41 0.54 16 31 H 0.39 6.50 8.47 -40.82 -0.35 6.15 16 32 H 0.09 1.68 6.70 -52.49 -0.35 1.32 16 33 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.10 2.40 4.73 -52.49 -0.25 2.15 16 35 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 36 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -30.45 329.27 -8.98 -39.44 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.16 Total: 7.21 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.90 Total: -20.51 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.29 Total: -48.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.17 Total: 17.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.45 -8.98 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.489 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds