Wall clock time and date at job start Tue Mar 31 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38623 * 120.44398 * 2 1 4 4 C 1.38580 * 118.39575 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.44526 * 180.02562 * 4 3 2 6 6 N 1.46494 * 109.47421 * 94.99831 * 5 4 3 7 7 C 1.39683 * 120.00329 * 180.02562 * 6 5 4 8 8 C 1.39338 * 119.94683 * 359.72046 * 7 6 5 9 9 C 1.38473 * 120.41814 * 179.72547 * 8 7 6 10 10 C 1.37692 * 120.32823 * 0.55271 * 9 8 7 11 11 C 1.40745 * 119.89375 * 359.72734 * 10 9 8 12 12 C 1.41403 * 120.20907 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00006 * 150.19537 * 12 11 10 14 14 C 1.39924 * 120.00261 * 330.19018 * 12 11 10 15 15 N 1.30829 * 120.00650 * 161.72847 * 14 12 11 16 16 Si 1.86801 * 119.99868 * 341.73308 * 14 12 11 17 17 H 1.48495 * 109.47475 * 95.41073 * 16 14 12 18 18 H 1.48500 * 109.47418 * 215.41035 * 16 14 12 19 19 H 1.48504 * 109.46919 * 335.40960 * 16 14 12 20 20 C 1.38271 * 119.95252 * 179.97438 * 7 6 5 21 21 N 1.32347 * 119.10463 * 0.27075 * 4 3 2 22 22 C 1.31782 * 120.82088 * 359.44477 * 21 4 3 23 23 C 1.50699 * 119.12538 * 180.30781 * 22 21 4 24 24 N 1.31808 * 121.75078 * 0.57336 * 22 21 4 25 25 H 1.08998 * 109.47251 * 89.99659 * 1 2 3 26 26 H 1.09000 * 109.46765 * 210.00458 * 1 2 3 27 27 H 1.09002 * 109.46697 * 329.99482 * 1 2 3 28 28 H 1.07995 * 120.80185 * 359.95605 * 3 2 1 29 29 H 1.08999 * 109.46512 * 214.99463 * 5 4 3 30 30 H 1.09000 * 109.46841 * 334.99311 * 5 4 3 31 31 H 0.97005 * 119.99686 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.79047 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.83916 * 180.27930 * 9 8 7 34 34 H 1.07997 * 120.05461 * 179.74753 * 10 9 8 35 35 H 0.96998 * 120.00437 * 180.02562 * 15 14 12 36 36 H 1.08005 * 120.16438 * 359.97287 * 20 7 6 37 37 H 1.08999 * 109.47190 * 270.26121 * 23 22 21 38 38 H 1.09005 * 109.46879 * 30.26006 * 23 22 21 39 39 H 1.08998 * 109.46786 * 150.25525 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1456 0.0005 5 6 4.4040 2.4167 0.0012 6 7 4.7673 2.7637 1.3772 7 6 5.5232 3.9103 1.6321 8 6 5.9361 4.7201 0.5761 9 6 6.6810 5.8621 0.8181 10 6 7.0317 6.2038 2.1050 11 6 6.6267 5.3923 3.1813 12 6 6.9826 5.7372 4.5057 13 1 6.3385 5.4606 5.3274 14 6 8.1693 6.4366 4.7517 15 7 8.3355 7.0638 5.8877 16 14 9.5161 6.4751 3.4579 17 1 9.3844 7.7092 2.6426 18 1 10.8432 6.4614 4.1242 19 1 9.3916 5.2851 2.5783 20 6 5.8651 4.2371 2.9314 21 7 4.1964 -0.0330 -0.0044 22 6 3.4957 -1.1491 0.0011 23 6 4.2206 -2.4703 0.0022 24 7 2.1777 -1.1406 0.0006 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6900 2.1419 -0.0007 29 1 5.3094 2.2709 -0.5879 30 1 3.8138 3.2235 -0.4333 31 1 4.4822 2.1975 2.1116 32 1 5.6694 4.4581 -0.4371 33 1 6.9923 6.4855 -0.0071 34 1 7.6162 7.0932 2.2883 35 1 9.1580 7.5490 6.0581 36 1 5.5487 3.6081 3.7504 37 1 4.3959 -2.7894 -1.0251 38 1 5.1755 -2.3604 0.5165 39 1 3.6149 -3.2166 0.5163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594704210.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:43 Heat of formation + Delta-G solvation = 41.083017 kcal Electronic energy + Delta-G solvation = -20590.569685 eV Core-core repulsion = 17496.566977 eV Total energy + Delta-G solvation = -3094.002708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24022 -39.86505 -37.22599 -35.60769 -35.26204 -34.24342 -32.05028 -30.74649 -30.13221 -29.05555 -27.13813 -26.89384 -23.41416 -23.04173 -22.79076 -21.77706 -19.37029 -18.83808 -17.77247 -17.42251 -16.69056 -16.53750 -16.37663 -16.03783 -15.79314 -15.03272 -15.01357 -14.47148 -14.32215 -14.27108 -14.01409 -13.87631 -13.67378 -13.28368 -13.27864 -13.11047 -13.08798 -12.70923 -12.60383 -12.27126 -11.90925 -11.66458 -11.48028 -11.36692 -11.08883 -10.62288 -10.37954 -10.32575 -9.47410 -8.87082 -8.14487 -6.49766 -0.22469 -0.06730 0.86527 1.08963 1.30180 1.45109 1.54022 2.17635 2.38856 2.67498 2.79164 2.91039 2.97693 3.30857 3.61639 3.89694 3.98733 4.26026 4.35066 4.36779 4.51592 4.55581 4.63802 4.64789 4.67424 4.72162 4.73776 4.92001 4.96177 4.99644 5.07253 5.12437 5.16534 5.44918 5.51646 5.73526 5.86352 5.98884 6.00349 6.07816 6.38652 6.66657 6.77574 6.84274 7.00322 7.04496 8.22024 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.028093 B = 0.003216 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.443220 B = 8703.395330 C = 8802.029991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.170 3.830 3 C -0.216 4.216 4 C 0.157 3.843 5 C 0.186 3.814 6 N -0.744 5.744 7 C 0.245 3.755 8 C -0.287 4.287 9 C -0.046 4.046 10 C -0.292 4.292 11 C 0.108 3.892 12 C -0.491 4.491 13 H 0.051 0.949 14 C 0.049 3.951 15 N -0.855 5.855 16 Si 0.971 3.029 17 H -0.256 1.256 18 H -0.281 1.281 19 H -0.255 1.255 20 C -0.295 4.295 21 N -0.536 5.536 22 C 0.304 3.696 23 C -0.082 4.082 24 N -0.535 5.535 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.173 0.827 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.393 0.607 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.093 0.907 35 H 0.293 0.707 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.938 -13.480 -15.286 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.023 3.977 3 C -0.239 4.239 4 C 0.011 3.989 5 C 0.061 3.939 6 N -0.376 5.376 7 C 0.143 3.857 8 C -0.309 4.309 9 C -0.064 4.064 10 C -0.313 4.313 11 C 0.105 3.895 12 C -0.521 4.521 13 H 0.069 0.931 14 C -0.165 4.165 15 N -0.482 5.482 16 Si 0.795 3.205 17 H -0.182 1.182 18 H -0.207 1.207 19 H -0.179 1.179 20 C -0.319 4.319 21 N -0.252 5.252 22 C 0.037 3.963 23 C -0.140 4.140 24 N -0.251 5.251 25 H 0.120 0.880 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.191 0.809 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.226 0.774 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.374 -14.205 -15.288 23.767 hybrid contribution 0.172 0.827 0.700 1.098 sum -11.202 -13.378 -14.588 22.743 Atomic orbital electron populations 1.20907 0.84942 1.05147 1.04975 1.22427 0.99412 0.87578 0.88235 1.22917 0.94842 1.02004 1.04098 1.21781 0.92337 0.93360 0.91385 1.20085 0.98064 0.90838 0.84865 1.44307 1.60220 1.26364 1.06692 1.17540 0.89163 0.86039 0.92920 1.20357 1.13136 1.00242 0.97191 1.20778 0.94677 0.95498 0.95464 1.20991 1.13344 1.02904 0.94033 1.17565 0.89678 0.89757 0.92490 1.19458 1.06855 1.32552 0.93216 0.93116 1.26817 1.01336 0.90427 0.97950 1.69733 1.27877 1.24258 1.26292 0.85412 0.75877 0.80929 0.78315 1.18170 1.20750 1.17899 1.20482 1.15539 1.01550 0.94368 1.68130 1.42667 0.98974 1.15442 1.23854 0.87056 0.95428 0.89976 1.20653 0.99825 0.88672 1.04862 1.68198 1.09685 1.31301 1.15935 0.87976 0.89792 0.88144 0.80948 0.91031 0.88588 0.77354 0.85265 0.85279 0.88920 0.89707 0.89242 0.88252 0.89563 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.22 71.24 0.73 -0.38 16 2 C 0.17 3.24 6.82 42.58 0.29 3.53 16 3 C -0.22 -4.21 9.52 22.44 0.21 -3.99 16 4 C 0.16 3.80 6.19 42.56 0.26 4.07 16 5 C 0.19 4.70 5.26 85.63 0.45 5.15 16 6 N -0.74 -23.92 5.72 -343.31 -1.96 -25.89 16 7 C 0.24 9.88 6.64 38.16 0.25 10.13 16 8 C -0.29 -10.87 9.32 22.59 0.21 -10.66 16 9 C -0.05 -1.86 10.01 22.20 0.22 -1.64 16 10 C -0.29 -14.20 7.17 22.75 0.16 -14.04 16 11 C 0.11 5.76 5.10 -21.31 -0.11 5.65 16 12 C -0.49 -28.86 9.57 23.46 0.22 -28.64 16 13 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 14 C 0.05 2.71 5.40 85.25 0.46 3.17 16 15 N -0.85 -48.64 13.93 21.82 0.30 -48.33 16 16 Si 0.97 44.80 24.52 68.60 1.68 46.48 16 17 H -0.26 -11.09 6.71 99.48 0.67 -10.42 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.26 -12.11 6.86 99.48 0.68 -11.43 16 20 C -0.30 -14.24 9.63 22.86 0.22 -14.02 16 21 N -0.54 -14.38 10.27 -176.02 -1.81 -16.18 16 22 C 0.30 7.25 7.64 138.75 1.06 8.31 16 23 C -0.08 -1.38 10.32 71.24 0.74 -0.64 16 24 N -0.53 -12.19 10.27 -176.01 -1.81 -14.00 16 25 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.74 8.10 -2.39 -0.02 0.72 16 28 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.07 1.90 7.93 -2.39 -0.02 1.88 16 30 H 0.10 2.03 7.87 -2.39 -0.02 2.01 16 31 H 0.39 12.56 8.47 -92.70 -0.79 11.77 16 32 H 0.13 3.97 6.70 -2.91 -0.02 3.95 16 33 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.09 4.52 4.73 -2.91 -0.01 4.50 16 35 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 36 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -68.28 329.27 2.01 -66.26 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.22 Total: 25.65 kcal Atomic # 6 Polarization: -39.37 SS G_CDS: 5.39 Total: -33.98 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -5.28 Total: -104.41 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.68 Total: 46.48 kcal Total: -68.28 2.01 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594704210.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.347 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds