Wall clock time and date at job start Tue Mar 31 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99975 * 2 1 4 4 N 1.46900 * 109.47383 * 124.13291 * 3 2 1 5 5 C 1.46899 * 110.99663 * 299.66288 * 4 3 2 6 6 C 1.50703 * 109.47228 * 288.28209 * 5 4 3 7 7 H 1.08008 * 119.99948 * 355.14703 * 6 5 4 8 8 C 1.37882 * 120.00347 * 175.15237 * 6 5 4 9 9 N 1.31512 * 119.99971 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99628 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.47059 * 90.00041 * 10 8 6 12 12 H 1.48494 * 109.47234 * 209.99910 * 10 8 6 13 13 H 1.48504 * 109.47233 * 330.00435 * 10 8 6 14 14 C 1.46897 * 111.00097 * 63.61743 * 4 3 2 15 15 C 1.50697 * 109.47402 * 66.04671 * 14 4 3 16 16 C 1.39683 * 119.64527 * 94.99826 * 15 14 4 17 17 N 1.31336 * 120.71004 * 180.02562 * 16 15 14 18 18 C 1.33755 * 119.71120 * 0.02562 * 17 16 15 19 19 C 1.40585 * 121.10867 * 179.97438 * 18 17 16 20 20 C 1.36066 * 119.71439 * 180.02562 * 19 18 17 21 21 C 1.39411 * 120.96913 * 359.97438 * 20 19 18 22 22 C 1.36061 * 120.96660 * 0.02562 * 21 20 19 23 23 C 1.40579 * 119.71739 * 359.97438 * 22 21 20 24 24 N 1.31336 * 119.64667 * 274.98243 * 15 14 4 25 25 H 1.08004 * 119.99772 * 0.02562 * 1 2 3 26 26 H 1.07994 * 120.00132 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00432 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47087 * 4.12862 * 3 2 1 29 29 H 1.09003 * 109.46795 * 244.13282 * 3 2 1 30 30 H 1.09002 * 109.47452 * 48.28178 * 5 4 3 31 31 H 1.09007 * 109.46923 * 168.28457 * 5 4 3 32 32 H 0.97006 * 119.99532 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.46786 * 306.04485 * 14 4 3 34 34 H 1.09001 * 109.46924 * 186.04580 * 14 4 3 35 35 H 1.07995 * 119.64609 * 0.02562 * 16 15 14 36 36 H 1.07998 * 120.14071 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.51387 * 180.02562 * 20 19 18 38 38 H 1.07995 * 119.50902 * 179.72037 * 21 20 19 39 39 H 1.08001 * 120.13599 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9814 1.3407 1.1464 5 6 2.2460 1.2290 2.4131 6 6 1.4946 2.5094 2.6724 7 1 1.6186 3.3522 2.0085 8 6 0.6491 2.6050 3.7573 9 7 -0.0062 3.7226 3.9838 10 14 0.4343 1.1472 4.9053 11 1 1.4390 1.2239 5.9962 12 1 -0.9315 1.1727 5.4877 13 1 0.6248 -0.1140 4.1448 14 6 4.0025 0.2904 1.0360 15 6 4.8930 0.5777 -0.1452 16 6 6.0945 1.2640 0.0460 17 7 6.8862 1.5259 -0.9687 18 6 6.5393 1.1322 -2.1990 19 6 7.3642 1.3974 -3.3061 20 6 6.9833 0.9843 -4.5453 21 6 5.7842 0.2994 -4.7361 22 6 4.9604 0.0249 -3.6885 23 6 5.3199 0.4356 -2.3931 24 7 4.5313 0.1797 -1.3435 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.3575 2.1323 0.0740 29 1 2.6334 1.3956 -0.9247 30 1 1.5409 0.4000 2.3521 31 1 2.9489 1.0491 3.2267 32 1 -0.6013 3.7897 4.7469 33 1 3.5166 -0.6756 0.8984 34 1 4.6018 0.2693 1.9462 35 1 6.3754 1.5828 1.0389 36 1 8.2962 1.9267 -3.1735 37 1 7.6197 1.1894 -5.3934 38 1 5.5028 -0.0137 -5.7306 39 1 4.0343 -0.5063 -3.8517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595500627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:55 Heat of formation + Delta-G solvation = 103.097993 kcal Electronic energy + Delta-G solvation = -21451.756833 eV Core-core repulsion = 18360.443297 eV Total energy + Delta-G solvation = -3091.313536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41702 -38.17876 -37.01278 -34.72739 -32.79919 -32.50494 -30.97638 -30.65989 -28.14965 -26.87803 -24.81005 -24.35572 -22.41491 -22.28253 -20.82018 -19.01611 -18.46423 -18.12791 -16.76718 -16.34752 -15.51605 -15.37696 -14.92693 -14.50190 -14.42584 -14.21168 -13.95705 -13.87588 -13.51349 -12.63825 -12.37357 -11.98124 -11.95553 -11.89208 -11.74266 -11.64642 -11.52921 -11.28304 -11.02338 -10.73240 -10.56258 -10.40286 -9.94645 -9.39065 -9.01816 -8.90024 -8.78054 -8.63682 -8.55591 -7.45237 -6.04414 -4.01434 0.18445 0.54404 1.91089 2.72045 2.86036 3.28118 3.36173 3.37620 3.90789 4.02710 4.14139 4.27497 4.42222 4.63538 4.74420 4.91937 5.00161 5.05387 5.16163 5.27382 5.32438 5.51467 5.63779 5.71896 5.77378 5.87879 5.91467 5.96388 6.11817 6.16139 6.23567 6.41606 6.58069 6.66271 6.78964 6.96769 7.16503 7.29918 7.33192 7.56667 7.78991 7.84186 7.94433 8.64441 9.05075 9.57201 11.08763 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027441 B = 0.004126 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.143085 B = 6783.879931 C = 7252.466958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C 0.089 3.911 4 N -0.513 5.513 5 C 0.159 3.841 6 C -0.504 4.504 7 H 0.080 0.920 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.093 3.907 15 C 0.131 3.869 16 C 0.101 3.899 17 N -0.431 5.431 18 C 0.070 3.930 19 C -0.082 4.082 20 C -0.107 4.107 21 C -0.105 4.105 22 C -0.082 4.082 23 C 0.082 3.918 24 N -0.421 5.421 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.003 0.997 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.177 0.823 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.981 -9.033 -14.632 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.193 4.193 3 C -0.039 4.039 4 N -0.236 5.236 5 C 0.034 3.966 6 C -0.542 4.542 7 H 0.098 0.902 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.191 1.191 14 C -0.037 4.037 15 C -0.025 4.025 16 C -0.074 4.074 17 N -0.144 5.144 18 C -0.055 4.055 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.042 4.042 24 N -0.136 5.136 25 H 0.118 0.882 26 H 0.103 0.897 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.021 0.979 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.194 0.806 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.158 -8.487 -14.705 20.883 hybrid contribution -0.696 -1.484 0.813 1.829 sum 11.462 -9.971 -13.892 20.586 Atomic orbital electron populations 1.23760 0.96095 1.01263 1.01227 1.23480 0.96485 0.99750 0.99537 1.21302 0.94631 0.94652 0.93336 1.62322 1.14327 1.42810 1.04156 1.20279 0.92735 0.97974 0.85660 1.20957 1.23721 0.98083 1.11446 0.90234 1.24859 0.95378 0.95528 0.97361 1.69892 1.28954 1.25741 1.29361 0.86931 0.77675 0.83998 0.81613 1.20200 1.21263 1.19090 1.21087 0.94012 0.95603 0.92966 1.22623 0.93938 0.92349 0.93572 1.23952 0.90851 0.93407 0.99221 1.68717 1.31225 1.15885 0.98581 1.19619 0.94547 0.98373 0.92918 1.20783 0.99326 0.99350 0.90682 1.20948 0.96798 0.97824 0.97145 1.20955 0.94245 0.98145 0.99196 1.20818 1.00228 0.99181 0.89879 1.19634 0.92252 0.98030 0.94332 1.68620 1.29696 1.16866 0.98448 0.88245 0.89689 0.88423 0.89405 0.91342 0.97881 0.95933 0.92704 0.92836 0.88922 0.80619 0.84588 0.85031 0.85006 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 14.32 29.02 0.42 -2.82 16 2 C -0.17 -3.10 7.44 -36.02 -0.27 -3.37 16 3 C 0.09 1.72 5.41 -4.97 -0.03 1.70 16 4 N -0.51 -10.30 4.65 -238.96 -1.11 -11.41 16 5 C 0.16 3.68 3.68 -4.98 -0.02 3.67 16 6 C -0.50 -13.93 9.07 -34.44 -0.31 -14.24 16 7 H 0.08 2.43 7.89 -52.48 -0.41 2.02 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 10 Si 0.87 21.10 27.57 -169.99 -4.69 16.41 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.22 6.40 56.52 0.36 -5.85 16 14 C 0.09 1.50 5.12 -4.98 -0.03 1.48 16 15 C 0.13 2.03 5.72 -82.27 -0.47 1.56 16 16 C 0.10 1.46 10.84 -17.22 -0.19 1.28 16 17 N -0.43 -6.43 10.46 -10.80 -0.11 -6.55 16 18 C 0.07 0.99 6.59 -84.79 -0.56 0.43 16 19 C -0.08 -0.90 9.99 -39.48 -0.39 -1.30 16 20 C -0.11 -0.93 9.95 -39.92 -0.40 -1.33 16 21 C -0.11 -0.94 9.95 -39.93 -0.40 -1.33 16 22 C -0.08 -0.94 9.98 -39.48 -0.39 -1.33 16 23 C 0.08 1.19 6.59 -84.80 -0.56 0.63 16 24 N -0.42 -6.64 8.86 -7.06 -0.06 -6.70 16 25 H 0.10 1.82 7.84 -52.48 -0.41 1.41 16 26 H 0.08 1.30 8.06 -52.49 -0.42 0.88 16 27 H 0.10 1.66 6.78 -52.49 -0.36 1.30 16 28 H 0.09 1.92 7.01 -51.93 -0.36 1.55 16 29 H 0.07 1.29 6.15 -51.93 -0.32 0.97 16 30 H 0.00 0.08 5.45 -51.93 -0.28 -0.20 16 31 H 0.02 0.51 7.48 -51.93 -0.39 0.12 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.05 0.86 6.31 -51.93 -0.33 0.53 16 34 H 0.09 1.32 7.77 -51.93 -0.40 0.92 16 35 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -31.71 325.55 -8.96 -40.67 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.98 Total: 2.25 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.69 Total: -13.10 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.51 Total: -51.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.69 Total: 16.41 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.71 -8.96 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595500627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.768 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds