Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40547 * 119.49407 * 2 1 4 4 C 1.35676 * 120.08466 * 179.75809 * 3 2 1 5 5 C 1.41819 * 119.16477 * 0.51049 * 4 3 2 6 6 N 1.31696 * 120.48061 * 179.77191 * 5 4 3 7 7 C 1.46496 * 120.00228 * 185.61049 * 6 5 4 8 8 H 1.09008 * 109.47171 * 355.19947 * 7 6 5 9 9 C 1.53003 * 109.47438 * 115.19989 * 7 6 5 10 10 C 1.50699 * 109.47004 * 295.00169 * 9 7 6 11 11 H 1.08000 * 119.99943 * 359.97438 * 10 9 7 12 12 C 1.37871 * 120.00209 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99966 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00551 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46712 * 59.99984 * 14 12 10 16 16 H 1.48498 * 109.47302 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47091 * 300.00061 * 14 12 10 18 18 C 1.50699 * 109.47313 * 235.20248 * 7 6 5 19 19 C 1.38235 * 119.99685 * 319.72426 * 18 7 6 20 20 C 1.38237 * 119.99855 * 179.80927 * 19 18 7 21 21 C 1.38245 * 119.99796 * 0.39860 * 20 19 18 22 22 C 1.38230 * 119.99704 * 359.85573 * 21 20 19 23 23 C 1.38225 * 120.00651 * 359.95617 * 22 21 20 24 24 N 1.37287 * 119.04236 * 359.49375 * 5 4 3 25 25 H 0.96991 * 120.09095 * 180.27432 * 24 5 4 26 26 N 1.30326 * 119.49505 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46923 * 269.97682 * 1 2 3 28 28 H 1.09001 * 109.46834 * 29.97888 * 1 2 3 29 29 H 1.09000 * 109.46826 * 149.98061 * 1 2 3 30 30 H 1.08000 * 119.95613 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.42227 * 180.28325 * 4 3 2 32 32 H 1.08999 * 109.46956 * 175.00375 * 9 7 6 33 33 H 1.08996 * 109.46595 * 54.99900 * 9 7 6 34 34 H 0.97000 * 120.00754 * 179.97438 * 13 12 10 35 35 H 1.07995 * 120.00068 * 0.02562 * 19 18 7 36 36 H 1.07995 * 120.00285 * 180.23407 * 20 19 18 37 37 H 1.08001 * 119.99481 * 179.83389 * 21 20 19 38 38 H 1.08007 * 119.99588 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.00479 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.2233 0.0000 4 6 3.5557 1.2373 0.0050 5 6 4.2596 0.0061 -0.0009 6 7 5.5764 -0.0105 -0.0008 7 6 6.2930 -1.2816 -0.1310 8 1 5.5773 -2.1039 -0.1303 9 6 7.0800 -1.2916 -1.4430 10 6 6.1205 -1.2540 -2.6045 11 1 5.0559 -1.2263 -2.4249 12 6 6.6017 -1.2551 -3.8965 13 7 7.8981 -1.2893 -4.1154 14 14 5.4125 -1.2093 -5.3364 15 1 4.5909 0.0254 -5.2606 16 1 6.1763 -1.2176 -6.6098 17 1 4.5248 -2.3986 -5.2832 18 6 7.2443 -1.4428 1.0266 19 6 7.9656 -0.3562 1.4849 20 6 8.8353 -0.5032 2.5493 21 6 8.9899 -1.7386 3.1501 22 6 8.2726 -2.8263 2.6883 23 6 7.4000 -2.6785 1.6265 24 7 3.5484 -1.1682 -0.0009 25 1 4.0143 -2.0188 -0.0009 26 7 2.1487 -1.1344 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6501 2.1534 0.0004 31 1 4.0929 2.1742 0.0096 32 1 7.6823 -2.1983 -1.4985 33 1 7.7321 -0.4191 -1.4821 34 1 8.2368 -1.2905 -5.0243 35 1 7.8470 0.6082 1.0137 36 1 9.3960 0.3465 2.9098 37 1 9.6714 -1.8540 3.9799 38 1 8.3937 -3.7916 3.1574 39 1 6.8392 -3.5282 1.2660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596170943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = 105.032552 kcal Electronic energy + Delta-G solvation = -21435.976604 eV Core-core repulsion = 18344.746956 eV Total energy + Delta-G solvation = -3091.229648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.91072 -38.81292 -36.05682 -33.58207 -32.81784 -32.20252 -30.49005 -30.12481 -28.62348 -27.39561 -25.31052 -23.52044 -22.19953 -21.92029 -21.50283 -19.51668 -18.14452 -16.97358 -16.36329 -16.06464 -15.75250 -14.79592 -14.72154 -14.51683 -14.38790 -13.94343 -13.22080 -13.08926 -12.92557 -12.86895 -12.55293 -12.49681 -12.20842 -12.05066 -11.47722 -11.23490 -10.89901 -10.80524 -10.68297 -10.62780 -10.36245 -10.27110 -10.05765 -9.69807 -9.15225 -8.66529 -8.48722 -8.33147 -8.16045 -7.13040 -6.00240 -4.02198 0.91885 1.79771 1.85875 2.19586 2.88225 3.31031 3.35377 3.38175 3.74809 4.23448 4.44788 4.56258 4.73636 4.85518 5.18107 5.28898 5.29948 5.35882 5.40798 5.49564 5.49895 5.59165 5.66411 5.87551 5.94469 6.07440 6.08100 6.12633 6.32500 6.40240 6.52235 6.54028 6.80238 6.86929 6.94137 7.12980 7.23493 7.45636 7.60791 7.74649 7.96357 8.18432 8.36290 8.62557 9.00769 9.60450 11.10771 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009359 B = 0.007400 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.973982 B = 3783.046207 C = 6104.390721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 C -0.135 4.135 4 C -0.055 4.055 5 C 0.353 3.647 6 N -0.535 5.535 7 C 0.121 3.879 8 H 0.032 0.968 9 C 0.043 3.957 10 C -0.512 4.512 11 H 0.049 0.951 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.278 1.278 18 C -0.056 4.056 19 C -0.089 4.089 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.126 4.126 23 C -0.123 4.123 24 N -0.549 5.549 25 H 0.434 0.566 26 N -0.231 5.231 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.023 0.977 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 3.113 12.546 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.160 4.160 4 C -0.083 4.083 5 C 0.082 3.918 6 N -0.262 5.262 7 C 0.011 3.989 8 H 0.050 0.950 9 C 0.006 3.994 10 C -0.551 4.551 11 H 0.067 0.933 12 C -0.141 4.141 13 N -0.532 5.532 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.057 4.057 19 C -0.107 4.107 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.142 4.142 24 N -0.285 5.285 25 H 0.280 0.720 26 N -0.043 5.043 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.594 2.632 12.438 15.346 hybrid contribution -0.412 -0.321 -1.111 1.228 sum -9.007 2.311 11.327 14.655 Atomic orbital electron populations 1.20537 0.87233 1.03705 1.03089 1.21984 0.97490 0.89392 1.00794 1.21494 0.94568 0.98694 1.01274 1.21206 0.93473 0.96847 0.96789 1.20296 0.89824 0.86447 0.95273 1.73305 1.02093 1.26941 1.23904 1.20631 0.93538 0.89534 0.95214 0.95005 1.19139 0.94898 0.97929 0.87438 1.21025 0.92530 1.50675 0.90845 0.93309 1.24932 0.94965 0.95389 0.98767 1.69947 1.11769 1.50627 1.20828 0.86717 0.81125 0.78542 0.81998 1.20352 1.21154 1.20390 1.20080 0.97060 0.93168 0.95366 1.21070 0.94755 0.99376 0.95522 1.21132 0.99190 0.97190 0.97081 1.21002 1.00452 0.93366 1.00547 1.20972 0.97578 0.98372 0.97476 1.21029 0.99651 0.96996 0.96488 1.46735 1.00662 1.09273 1.71836 0.71976 1.74731 0.92314 1.25702 1.11603 0.90401 0.90240 0.90580 0.84103 0.82871 0.95888 0.95203 0.92928 0.85290 0.86645 0.86882 0.86728 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.17 36.01 0.37 -0.36 16 2 C 0.09 1.12 6.89 -82.36 -0.57 0.55 16 3 C -0.13 -1.63 9.68 -39.63 -0.38 -2.02 16 4 C -0.06 -0.83 10.03 -39.13 -0.39 -1.22 16 5 C 0.35 6.63 7.25 -156.23 -1.13 5.49 16 6 N -0.54 -11.24 9.14 -54.90 -0.50 -11.74 16 7 C 0.12 2.65 2.46 -69.08 -0.17 2.48 16 8 H 0.03 0.68 5.30 -51.92 -0.27 0.40 16 9 C 0.04 1.15 4.63 -27.88 -0.13 1.02 16 10 C -0.51 -14.65 8.84 -34.44 -0.30 -14.95 16 11 H 0.05 1.38 7.45 -52.49 -0.39 0.99 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.06 -1.11 4.95 -104.62 -0.52 -1.62 16 19 C -0.09 -1.66 9.32 -39.58 -0.37 -2.03 16 20 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 21 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 22 C -0.13 -1.92 10.05 -39.59 -0.40 -2.32 16 23 C -0.12 -2.16 9.67 -39.59 -0.38 -2.54 16 24 N -0.55 -9.91 6.66 31.22 0.21 -9.70 16 25 H 0.43 7.89 6.27 -182.68 -1.14 6.75 16 26 N -0.23 -3.70 11.82 33.73 0.40 -3.30 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.13 2.48 7.73 -52.49 -0.41 2.07 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -33.53 335.28 -10.40 -43.93 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.00 Total: 5.61 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -5.27 Total: -20.65 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.84 Total: -51.24 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.53 -10.40 -43.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596170943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.960 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds