Wall clock time and date at job start Tue Mar 31 2020 05:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50713 * 1 3 3 C 1.40544 * 119.49183 * 2 1 4 4 C 1.35686 * 120.08305 * 180.02562 * 3 2 1 5 5 C 1.41811 * 119.16302 * 0.02562 * 4 3 2 6 6 N 1.31703 * 120.47848 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99865 * 185.76315 * 6 5 4 8 8 H 1.09000 * 109.46939 * 354.64376 * 7 6 5 9 9 C 1.52995 * 109.46896 * 234.64148 * 7 6 5 10 10 C 1.50697 * 109.47296 * 65.00140 * 9 7 6 11 11 H 1.08000 * 120.00060 * 0.02562 * 10 9 7 12 12 C 1.37876 * 120.00371 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99825 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00231 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47407 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47143 * 120.00196 * 14 12 10 17 17 H 1.48497 * 109.47293 * 240.00515 * 14 12 10 18 18 C 1.50700 * 109.46748 * 114.64549 * 7 6 5 19 19 C 1.38238 * 120.00262 * 39.72116 * 18 7 6 20 20 C 1.38230 * 119.99752 * 179.78763 * 19 18 7 21 21 C 1.38236 * 120.00277 * 0.44186 * 20 19 18 22 22 C 1.38238 * 119.99705 * 359.81501 * 21 20 19 23 23 C 1.38232 * 120.00294 * 359.97438 * 22 21 20 24 24 N 1.37288 * 119.04553 * 0.26462 * 5 4 3 25 25 H 0.96998 * 120.08977 * 179.70473 * 24 5 4 26 26 N 1.30326 * 119.49519 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.46591 * 89.99974 * 1 2 3 28 28 H 1.09004 * 109.46565 * 209.99837 * 1 2 3 29 29 H 1.08998 * 109.46839 * 329.99690 * 1 2 3 30 30 H 1.08006 * 119.96093 * 0.04789 * 3 2 1 31 31 H 1.08002 * 120.41903 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47236 * 185.00049 * 9 7 6 33 33 H 1.09002 * 109.47188 * 305.00492 * 9 7 6 34 34 H 0.97007 * 119.99921 * 179.97438 * 13 12 10 35 35 H 1.08001 * 120.00008 * 0.02562 * 19 18 7 36 36 H 1.08007 * 119.99956 * 180.27675 * 20 19 18 37 37 H 1.07999 * 119.99968 * 179.83069 * 21 20 19 38 38 H 1.08002 * 119.99292 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00299 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.2233 0.0000 4 6 3.5558 1.2373 -0.0005 5 6 4.2596 0.0062 -0.0016 6 7 5.5765 -0.0105 -0.0027 7 6 6.2929 -1.2819 -0.1312 8 1 5.5780 -2.1046 -0.1185 9 6 7.2698 -1.4371 1.0360 10 6 6.4983 -1.5428 2.3262 11 1 5.4191 -1.5038 2.3148 12 6 7.1701 -1.6905 3.5211 13 7 8.4843 -1.7386 3.5350 14 14 6.2137 -1.8224 5.1202 15 1 4.7586 -1.7418 4.8349 16 1 6.5184 -3.1207 5.7736 17 1 6.6037 -0.7101 6.0234 18 6 7.0559 -1.2993 -1.4306 19 6 7.6996 -0.1574 -1.8696 20 6 8.4031 -0.1748 -3.0594 21 6 8.4555 -1.3313 -3.8147 22 6 7.8074 -2.4717 -3.3783 23 6 7.1075 -2.4557 -2.1864 24 7 3.5484 -1.1681 -0.0077 25 1 4.0144 -2.0188 -0.0128 26 7 2.1488 -1.1344 -0.0005 27 1 -0.3632 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6501 2.1535 0.0008 31 1 4.0930 2.1743 -0.0009 32 1 7.8654 -2.3388 0.8939 33 1 7.9282 -0.5693 1.0765 34 1 8.9569 -1.8422 4.3758 35 1 7.6560 0.7471 -1.2812 36 1 8.9098 0.7162 -3.4002 37 1 9.0029 -1.3440 -4.7456 38 1 7.8480 -3.3752 -3.9686 39 1 6.6008 -3.3465 -1.8456 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596170944.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:23 Heat of formation + Delta-G solvation = 105.078786 kcal Electronic energy + Delta-G solvation = -21403.491773 eV Core-core repulsion = 18312.264130 eV Total energy + Delta-G solvation = -3091.227643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93824 -38.82683 -36.06013 -33.60917 -32.85031 -32.20106 -30.50262 -30.12959 -28.65815 -27.41957 -25.30227 -23.54297 -22.21113 -21.91972 -21.53137 -19.52352 -18.16138 -17.00952 -16.36382 -16.07319 -15.77197 -14.81024 -14.73023 -14.53800 -14.40026 -13.96193 -13.23334 -13.10670 -12.94466 -12.89304 -12.56906 -12.52127 -12.23039 -12.06046 -11.47215 -11.24057 -10.90131 -10.78786 -10.70776 -10.64360 -10.37836 -10.27884 -10.09032 -9.68501 -9.13470 -8.66618 -8.50020 -8.33334 -8.16410 -7.17328 -5.99961 -4.01499 0.88407 1.78248 1.84539 2.17031 2.85746 3.29460 3.36867 3.41168 3.71965 4.22559 4.45490 4.52949 4.71145 4.82522 5.15661 5.27744 5.28805 5.36417 5.39829 5.46840 5.47487 5.58540 5.63253 5.85973 5.93205 6.04434 6.06396 6.09714 6.29600 6.39332 6.50784 6.51239 6.79821 6.85916 6.92967 7.11439 7.21960 7.44412 7.61636 7.75392 7.96928 8.15966 8.37081 8.60980 9.01766 9.61127 11.11152 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.008435 B = 0.007942 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3318.568956 B = 3524.673223 C = 6175.303490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.086 3.914 3 C -0.134 4.134 4 C -0.057 4.057 5 C 0.348 3.652 6 N -0.530 5.530 7 C 0.121 3.879 8 H 0.032 0.968 9 C 0.043 3.957 10 C -0.509 4.509 11 H 0.049 0.951 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.057 4.057 19 C -0.090 4.090 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.122 4.122 24 N -0.549 5.549 25 H 0.435 0.565 26 N -0.231 5.231 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.022 0.978 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 4.540 -12.079 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.160 4.160 4 C -0.085 4.085 5 C 0.076 3.924 6 N -0.257 5.257 7 C 0.010 3.990 8 H 0.050 0.950 9 C 0.006 3.994 10 C -0.548 4.548 11 H 0.067 0.933 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.058 4.058 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.141 4.141 24 N -0.286 5.286 25 H 0.282 0.718 26 N -0.043 5.043 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.159 0.841 31 H 0.171 0.829 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.452 4.041 -11.897 16.343 hybrid contribution -0.243 -0.433 1.090 1.198 sum -10.695 3.608 -10.807 15.626 Atomic orbital electron populations 1.20538 0.87213 1.03696 1.03116 1.21991 0.97505 0.89386 1.00867 1.21501 0.94561 0.98697 1.01193 1.21215 0.93486 0.96840 0.96938 1.20370 0.89909 0.86466 0.95649 1.73321 1.01852 1.27166 1.23344 1.20611 0.95379 0.89431 0.93537 0.94973 1.19114 0.93201 0.97680 0.89406 1.21084 0.92618 1.49573 0.91496 0.93296 1.24943 0.94799 0.95477 0.98952 1.69971 1.06433 1.50453 1.26338 0.86586 0.80126 0.77628 0.83975 1.20023 1.21007 1.20932 1.20110 0.97214 0.93405 0.95052 1.21077 0.95640 0.98672 0.95448 1.21130 0.99898 0.97925 0.95603 1.21005 1.00838 0.93597 0.99904 1.20979 0.98714 0.98016 0.96659 1.21027 1.00426 0.97766 0.94880 1.46747 1.00645 1.09326 1.71885 0.71842 1.74737 0.92325 1.25707 1.11519 0.90387 0.90574 0.90244 0.84087 0.82861 0.95940 0.95190 0.93054 0.85271 0.86626 0.86863 0.86709 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.17 36.01 0.37 -0.33 16 2 C 0.09 1.07 6.89 -82.36 -0.57 0.51 16 3 C -0.13 -1.56 9.68 -39.63 -0.38 -1.95 16 4 C -0.06 -0.83 10.03 -39.13 -0.39 -1.22 16 5 C 0.35 6.44 7.54 -156.23 -1.18 5.26 16 6 N -0.53 -11.12 9.12 -54.91 -0.50 -11.62 16 7 C 0.12 2.64 2.46 -69.08 -0.17 2.47 16 8 H 0.03 0.68 5.29 -51.93 -0.27 0.41 16 9 C 0.04 1.16 4.63 -27.89 -0.13 1.03 16 10 C -0.51 -14.63 8.84 -34.44 -0.30 -14.93 16 11 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 14 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 18 C -0.06 -1.12 4.96 -104.62 -0.52 -1.64 16 19 C -0.09 -1.67 9.33 -39.58 -0.37 -2.04 16 20 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 21 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 22 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 23 C -0.12 -2.14 9.67 -39.58 -0.38 -2.52 16 24 N -0.55 -9.84 6.66 31.22 0.21 -9.63 16 25 H 0.43 7.93 6.26 -182.67 -1.14 6.79 16 26 N -0.23 -3.63 11.82 33.73 0.40 -3.23 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.13 2.47 7.71 -52.49 -0.40 2.06 16 36 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -33.75 335.83 -10.45 -44.20 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.01 Total: 5.24 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -5.32 Total: -20.82 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.84 Total: -51.05 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.75 -10.45 -44.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596170944.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.279 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds