Wall clock time and date at job start Tue Mar 31 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47291 * 240.00232 * 2 1 3 5 5 N 1.46499 * 109.47409 * 120.00086 * 2 1 3 6 6 C 1.35308 * 125.86944 * 74.99592 * 5 2 1 7 7 C 1.35347 * 106.17713 * 180.02562 * 6 5 2 8 8 C 1.50700 * 126.75515 * 180.02562 * 7 6 5 9 9 S 1.81393 * 109.47323 * 270.00176 * 8 7 6 10 10 C 1.81398 * 103.00147 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47080 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47083 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47248 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99838 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00356 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99950 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00415 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47060 * 59.99816 * 17 15 13 19 19 H 1.48498 * 109.47392 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47002 * 299.99960 * 17 15 13 21 21 N 1.33774 * 106.49812 * 0.02562 * 7 6 5 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.47087 * 299.99880 * 1 2 3 24 24 H 1.08997 * 109.47186 * 59.99928 * 1 2 3 25 25 H 1.08995 * 109.46937 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47007 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47201 * 300.00062 * 3 2 1 28 28 H 1.09004 * 109.47317 * 59.99668 * 3 2 1 29 29 H 1.09004 * 109.47015 * 299.99746 * 4 2 1 30 30 H 1.08997 * 109.47137 * 59.99809 * 4 2 1 31 31 H 1.08994 * 109.47145 * 180.02562 * 4 2 1 32 32 H 1.07997 * 126.91159 * 0.02959 * 6 5 2 33 33 H 1.09003 * 109.46650 * 29.99884 * 8 7 6 34 34 H 1.09002 * 109.47455 * 149.99597 * 8 7 6 35 35 H 1.09003 * 109.46836 * 299.99806 * 10 9 8 36 36 H 1.08991 * 109.47265 * 59.99805 * 10 9 8 37 37 H 1.09003 * 109.46914 * 299.99496 * 11 10 9 38 38 H 1.08991 * 109.47445 * 59.99653 * 11 10 9 39 39 H 1.09000 * 109.47530 * 299.99792 * 12 11 10 40 40 H 1.09003 * 109.46938 * 60.00075 * 12 11 10 41 41 H 0.96996 * 120.00130 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0151 -2.0289 1.3958 7 6 2.5507 -2.2284 2.6227 8 6 2.7664 -3.5531 3.3080 9 16 1.2951 -3.9775 4.2804 10 6 1.7390 -5.5751 5.0160 11 6 0.5813 -6.0776 5.8810 12 6 0.9554 -7.4254 6.5009 13 6 -0.1846 -7.9201 7.3533 14 1 -1.0858 -7.3317 7.4441 15 6 -0.0769 -9.1232 8.0180 16 7 1.0206 -9.8394 7.9078 17 14 -1.4903 -9.7367 9.0741 18 1 -2.7029 -9.8992 8.2323 19 1 -1.1272 -11.0448 9.6759 20 1 -1.7649 -8.7541 10.1530 21 7 2.8510 -1.0183 3.1075 22 7 2.5226 -0.1284 2.2385 23 1 -0.3634 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.6571 -2.7856 0.7135 33 1 2.9419 -4.3252 2.5589 34 1 3.6309 -3.4842 3.9682 35 1 1.9400 -6.2964 4.2239 36 1 2.6292 -5.4560 5.6335 37 1 0.3799 -5.3564 6.6730 38 1 -0.3087 -6.1968 5.2632 39 1 1.1566 -8.1465 5.7086 40 1 1.8456 -7.3066 7.1187 41 1 1.0963 -10.6860 8.3751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596383570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:34 Heat of formation + Delta-G solvation = 69.635040 kcal Electronic energy + Delta-G solvation = -19048.409590 eV Core-core repulsion = 16091.088942 eV Total energy + Delta-G solvation = -2957.320648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.49213 -37.85540 -34.41776 -33.15839 -31.99249 -31.87841 -28.68055 -28.08137 -27.56853 -27.06504 -23.91874 -23.38369 -21.65409 -20.35001 -19.90998 -17.39956 -16.71596 -16.40999 -15.62359 -15.17492 -14.85896 -14.64211 -14.58213 -14.45841 -14.17603 -13.55606 -13.42134 -13.02791 -12.92708 -12.67385 -12.43652 -12.40657 -12.06380 -11.93544 -11.68039 -11.67542 -11.47645 -10.93328 -10.88866 -10.83057 -10.58007 -10.22448 -9.86405 -9.75438 -9.30033 -9.17493 -9.02626 -8.34272 -7.37474 -5.99574 -4.01946 1.30596 1.73903 2.02228 2.72273 2.97004 3.35318 3.39139 3.42367 3.79226 4.05649 4.13612 4.17828 4.47323 4.60452 4.73755 4.84104 4.90058 5.01664 5.05850 5.08919 5.16809 5.22390 5.35585 5.36232 5.40839 5.54185 5.55669 5.58600 5.68255 5.75605 5.96615 6.17500 6.43511 6.59443 6.75666 7.05332 7.65840 7.78635 7.99550 8.39469 8.41631 9.04294 9.62023 11.11735 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.042698 B = 0.002372 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.612999 B =11799.777256 C =11988.728447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.163 3.837 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.283 5.283 6 C -0.031 4.031 7 C -0.001 4.001 8 C -0.004 4.004 9 S -0.262 6.262 10 C -0.075 4.075 11 C -0.094 4.094 12 C 0.028 3.972 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.256 5.256 22 N -0.083 5.083 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.189 0.811 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 19.599 -21.983 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.081 3.919 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.078 5.078 6 C -0.184 4.184 7 C -0.140 4.140 8 C -0.154 4.154 9 S -0.034 6.034 10 C -0.223 4.223 11 C -0.134 4.134 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.123 5.123 22 N -0.061 5.061 23 H 0.088 0.912 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.206 0.794 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.253 21.387 -21.171 30.178 hybrid contribution 0.053 -2.159 -0.140 2.164 sum 2.306 19.228 -21.310 28.796 Atomic orbital electron populations 1.22266 0.91635 1.03928 1.04065 1.21174 0.95569 0.94056 0.81117 1.22003 1.02516 0.92261 1.03902 1.22253 1.02549 1.01349 0.95666 1.47620 1.40160 1.05479 1.14524 1.23198 1.07900 0.86738 1.00603 1.21082 1.04954 0.94532 0.93395 1.21375 1.00158 0.93026 1.00835 1.87103 1.24788 1.29529 1.62016 1.23657 1.03775 0.93069 1.01771 1.21459 0.94758 0.99879 0.97257 1.19100 0.97067 0.89492 0.95456 1.21192 1.01558 1.04693 1.28447 0.92612 1.25022 0.95872 0.96793 0.96769 1.69954 1.26486 1.13791 1.43321 0.86629 0.82583 0.77955 0.80683 1.20221 1.21297 1.20185 1.75105 1.17996 0.97793 1.21413 1.78262 1.13882 1.22051 0.91953 0.91155 0.89638 0.91153 0.91248 0.90141 0.90502 0.91049 0.89441 0.91229 0.79429 0.88622 0.88411 0.90476 0.90371 0.92355 0.92450 0.96429 0.96384 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.73 37.16 0.32 -0.52 16 2 C 0.16 1.02 1.23 -131.82 -0.16 0.85 16 3 C -0.15 -0.83 8.05 37.16 0.30 -0.53 16 4 C -0.16 -0.64 8.29 37.16 0.31 -0.33 16 5 N -0.28 -2.88 3.18 -48.55 -0.15 -3.04 16 6 C -0.03 -0.32 10.63 -17.05 -0.18 -0.51 16 7 C 0.00 -0.01 6.51 -82.78 -0.54 -0.55 16 8 C 0.00 -0.06 6.50 36.01 0.23 0.18 16 9 S -0.26 -4.24 21.72 -107.50 -2.33 -6.57 16 10 C -0.07 -1.30 5.94 37.16 0.22 -1.08 16 11 C -0.09 -2.00 5.16 -26.73 -0.14 -2.13 16 12 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 13 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 N -0.26 -3.95 12.41 33.29 0.41 -3.54 16 22 N -0.08 -1.12 12.18 60.35 0.74 -0.39 16 23 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 24 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.53 8.03 -51.93 -0.42 0.12 16 29 H 0.07 0.26 7.39 -51.93 -0.38 -0.13 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.19 1.32 7.59 -52.49 -0.40 0.92 16 33 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -33.46 355.40 -7.53 -40.99 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -7.08 Total: -5.66 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -0.18 Total: -17.71 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 1.73 Total: -33.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.33 Total: -6.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.46 -7.53 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596383570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.626 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds