Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 5 5 C 1.50699 * 109.46841 * 64.99900 * 4 2 1 6 6 H 1.07995 * 120.00262 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99856 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00103 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47583 * 59.99740 * 9 7 5 11 11 H 1.48499 * 109.47176 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47193 * 299.99603 * 9 7 5 13 13 C 1.53002 * 109.47379 * 119.99788 * 2 1 3 14 14 N 1.46906 * 109.47053 * 295.00410 * 13 2 1 15 15 C 1.46901 * 110.99639 * 293.95281 * 14 13 2 16 16 C 1.46898 * 110.99746 * 169.99658 * 14 13 2 17 17 C 1.50703 * 109.46662 * 189.99888 * 16 14 13 18 18 C 1.38262 * 119.96525 * 269.72277 * 17 16 14 19 19 C 1.38207 * 120.07128 * 179.76804 * 18 17 16 20 20 C 1.38416 * 119.99986 * 0.51120 * 19 18 17 21 21 F 1.35102 * 120.03746 * 179.72014 * 20 19 18 22 22 C 1.38650 * 119.92804 * 359.74757 * 20 19 18 23 23 F 1.35096 * 120.03269 * 180.02562 * 22 20 19 24 24 C 1.38206 * 119.96760 * 90.00234 * 17 16 14 25 25 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 27 27 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 28 28 H 1.08995 * 109.47139 * 184.99680 * 4 2 1 29 29 H 1.09005 * 109.47062 * 304.99884 * 4 2 1 30 30 H 0.96994 * 120.00407 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.47056 * 175.00080 * 13 2 1 32 32 H 1.09004 * 109.47006 * 55.00197 * 13 2 1 33 33 H 1.08998 * 109.47452 * 60.00398 * 15 14 13 34 34 H 1.09000 * 109.46497 * 180.02562 * 15 14 13 35 35 H 1.09001 * 109.46901 * 299.99804 * 15 14 13 36 36 H 1.08988 * 109.47508 * 309.99614 * 16 14 13 37 37 H 1.09000 * 109.46960 * 70.00132 * 16 14 13 38 38 H 1.08001 * 119.96310 * 0.02562 * 18 17 16 39 39 H 1.08004 * 120.00311 * 180.25804 * 19 18 17 40 40 H 1.08000 * 119.99931 * 359.95766 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5193 -3.8512 9 14 1.4989 0.5627 -5.2496 10 1 2.0919 1.9227 -5.1872 11 1 1.9938 -0.1374 -6.4620 12 1 0.0190 0.6703 -5.3090 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.3340 1.3375 2.4894 16 6 1.9124 -0.7357 3.6671 17 6 1.2829 -0.0397 4.8463 18 6 2.0075 0.8930 5.5652 19 6 1.4307 1.5362 6.6440 20 6 0.1299 1.2391 7.0123 21 9 -0.4327 1.8632 8.0702 22 6 -0.5948 0.2999 6.2947 23 9 -1.8647 0.0087 6.6520 24 6 -0.0161 -0.3385 5.2115 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 3.1263 -0.7994 -1.2056 29 1 1.6055 -1.7199 -1.2951 30 1 2.9223 -1.8427 -4.7317 31 1 3.1263 -0.7994 1.2056 32 1 1.6055 -1.7198 1.2952 33 1 2.0678 1.9177 1.6059 34 1 2.0286 1.8782 3.3852 35 1 3.4126 1.1810 2.5099 36 1 1.4857 -1.7332 3.5639 37 1 2.9882 -0.8150 3.8239 38 1 3.0238 1.1223 5.2808 39 1 1.9963 2.2676 7.2022 40 1 -0.5797 -1.0700 4.6515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602442089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = -76.693627 kcal Electronic energy + Delta-G solvation = -21694.385579 eV Core-core repulsion = 18144.586507 eV Total energy + Delta-G solvation = -3549.799072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.65127 -48.72778 -39.66654 -37.53094 -34.51459 -32.27351 -31.35117 -30.73068 -27.32814 -27.01464 -26.13802 -23.90196 -23.34239 -22.20837 -21.02691 -18.89112 -18.11772 -17.37539 -17.13362 -16.54711 -16.38872 -15.43330 -15.14102 -15.12380 -14.89896 -14.68196 -14.36408 -14.24690 -13.72658 -13.56390 -13.11366 -12.60766 -12.32406 -12.19990 -12.15258 -11.77471 -11.50010 -11.45431 -11.31447 -11.20473 -10.85006 -10.74947 -10.30686 -10.29097 -9.63006 -9.32912 -9.17019 -8.99705 -8.86575 -8.33355 -8.12223 -5.98569 -3.99714 0.64209 0.75802 3.05779 3.33890 3.38367 3.40901 3.55076 4.08833 4.18238 4.26953 4.45843 4.48791 4.74610 4.86751 5.11880 5.32943 5.37146 5.43554 5.50290 5.57108 5.60220 5.69587 5.71671 5.78710 5.89755 6.06539 6.15231 6.17198 6.36238 6.48973 6.51092 6.67074 6.97469 7.08477 7.17979 7.27724 7.35542 7.67756 7.83737 8.01490 8.45556 9.06488 9.63751 11.12944 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.002889 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.120145 B = 9691.279485 C = 9872.089134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.017 3.983 16 C 0.088 3.912 17 C -0.049 4.049 18 C -0.096 4.096 19 C -0.126 4.126 20 C 0.060 3.940 21 F -0.132 7.132 22 C 0.067 3.933 23 F -0.130 7.130 24 C -0.104 4.104 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.202 3.449 21.495 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.066 4.066 14 N -0.257 5.257 15 C -0.131 4.131 16 C -0.039 4.039 17 C -0.050 4.050 18 C -0.114 4.114 19 C -0.145 4.145 20 C 0.040 3.960 21 F -0.111 7.111 22 C 0.047 3.953 23 F -0.109 7.109 24 C -0.124 4.124 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.695 3.418 21.375 21.712 hybrid contribution 0.295 0.412 -0.616 0.798 sum -1.400 3.830 20.758 21.155 Atomic orbital electron populations 1.21586 0.95729 1.00519 1.00194 1.21234 0.95988 0.99148 0.93626 0.92493 1.19118 0.95862 0.95562 0.90432 1.21195 1.34658 1.08309 0.90987 0.92630 1.25014 0.95321 0.95087 0.99082 1.69951 1.39053 1.21219 1.23497 0.86694 0.78932 0.80100 0.82493 1.20322 1.21383 1.20247 1.22379 0.97773 0.97210 0.89267 1.62072 1.58417 1.04051 1.01159 1.22519 0.95789 0.91836 1.02920 1.21093 0.98163 0.96960 0.87722 1.19768 0.93114 0.96154 0.95954 1.21051 1.00678 0.95504 0.94211 1.21032 0.92829 1.01769 0.98882 1.17703 0.93272 0.96625 0.88439 1.91518 1.85115 1.80803 1.53666 1.17695 0.80659 0.99257 0.97711 1.91529 1.35737 1.92314 1.91291 1.21006 0.95551 1.00769 0.95042 0.94204 0.93935 0.92789 0.96978 0.96593 0.93036 0.95075 0.91161 0.90432 0.91845 0.95775 0.89439 0.93474 0.84418 0.83801 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 8.89 37.16 0.33 -1.99 16 2 C -0.08 -1.59 2.26 -90.62 -0.20 -1.80 16 3 H 0.06 1.14 6.34 -51.93 -0.33 0.81 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 6 H 0.06 1.50 7.05 -52.49 -0.37 1.13 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 13 C 0.06 0.97 4.35 -3.82 -0.02 0.95 16 14 N -0.53 -7.08 4.21 -244.37 -1.03 -8.11 16 15 C 0.02 0.22 8.99 60.07 0.54 0.76 16 16 C 0.09 0.92 5.12 -4.98 -0.03 0.90 16 17 C -0.05 -0.48 4.88 -104.62 -0.51 -0.99 16 18 C -0.10 -0.80 7.91 -39.58 -0.31 -1.11 16 19 C -0.13 -1.07 10.02 -39.53 -0.40 -1.46 16 20 C 0.06 0.64 7.31 -39.36 -0.29 0.35 16 21 F -0.13 -1.53 17.18 2.25 0.04 -1.49 16 22 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 23 F -0.13 -1.61 17.18 2.25 0.04 -1.57 16 24 C -0.10 -1.07 9.68 -39.53 -0.38 -1.45 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 27 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 33 H 0.08 1.07 6.37 -51.93 -0.33 0.74 16 34 H 0.06 0.68 5.90 -51.93 -0.31 0.37 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.87 7.87 -51.94 -0.41 0.46 16 37 H 0.05 0.45 8.06 -51.93 -0.42 0.04 16 38 H 0.14 0.91 8.00 -52.49 -0.42 0.49 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -29.81 335.09 -8.10 -37.91 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.85 Total: -4.52 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.06 Total: -17.80 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.29 Total: -34.09 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.81 -8.10 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.785 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds