Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46683 * 2 1 4 4 C 1.52993 * 109.46929 * 119.99996 * 2 1 3 5 5 C 1.50708 * 109.47345 * 294.99853 * 4 2 1 6 6 H 1.08004 * 119.99617 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00208 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00031 * 359.73005 * 7 5 4 9 9 Si 1.86796 * 119.99664 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47376 * 269.72764 * 9 7 5 11 11 H 1.48497 * 109.47662 * 29.72872 * 9 7 5 12 12 H 1.48500 * 109.46811 * 149.72837 * 9 7 5 13 13 C 1.53004 * 109.47208 * 240.00174 * 2 1 3 14 14 N 1.46893 * 109.46984 * 174.73189 * 13 2 1 15 15 C 1.46904 * 110.99983 * 287.67235 * 14 13 2 16 16 C 1.46904 * 111.00022 * 163.71951 * 14 13 2 17 17 C 1.50705 * 109.47072 * 189.99742 * 16 14 13 18 18 C 1.38256 * 119.96452 * 269.72440 * 17 16 14 19 19 C 1.38209 * 120.06963 * 179.76816 * 18 17 16 20 20 C 1.38412 * 119.99863 * 0.50777 * 19 18 17 21 21 F 1.35101 * 120.03538 * 179.72317 * 20 19 18 22 22 C 1.38641 * 119.93054 * 359.74333 * 20 19 18 23 23 F 1.35102 * 120.03866 * 179.97438 * 22 20 19 24 24 C 1.38213 * 119.96386 * 89.99811 * 17 16 14 25 25 H 1.09001 * 109.47213 * 296.68658 * 1 2 3 26 26 H 1.09000 * 109.47178 * 56.68657 * 1 2 3 27 27 H 1.09000 * 109.46959 * 176.68635 * 1 2 3 28 28 H 1.08998 * 109.47358 * 175.00160 * 4 2 1 29 29 H 1.08999 * 109.47281 * 54.99685 * 4 2 1 30 30 H 0.97006 * 119.99791 * 0.27217 * 8 7 5 31 31 H 1.09007 * 109.46263 * 294.72824 * 13 2 1 32 32 H 1.08999 * 109.47173 * 54.72380 * 13 2 1 33 33 H 1.08999 * 109.46905 * 54.28461 * 15 14 13 34 34 H 1.08998 * 109.47186 * 174.28690 * 15 14 13 35 35 H 1.09005 * 109.46778 * 294.29238 * 15 14 13 36 36 H 1.08998 * 109.46618 * 309.99582 * 16 14 13 37 37 H 1.08996 * 109.46855 * 69.99758 * 16 14 13 38 38 H 1.08000 * 119.96163 * 0.02562 * 18 17 16 39 39 H 1.08004 * 119.99801 * 180.25271 * 19 18 17 40 40 H 1.08005 * 119.99967 * 359.95752 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6704 -1.5223 3.8516 9 14 1.4975 0.5622 5.2496 10 1 2.5656 1.5372 5.5869 11 1 0.2298 1.2889 4.9846 12 1 1.3036 -0.3727 6.3870 13 6 2.0401 -0.7212 -1.2493 14 7 3.5035 -0.6120 -1.3145 15 6 3.9143 0.7531 -1.6691 16 6 4.0630 -1.5914 -2.2557 17 6 5.5634 -1.6210 -2.1170 18 6 6.3451 -0.7837 -2.8912 19 6 7.7210 -0.8056 -2.7623 20 6 8.3183 -1.6738 -1.8650 21 9 9.6635 -1.6998 -1.7425 22 6 7.5347 -2.5171 -1.0924 23 9 8.1154 -3.3659 -0.2162 24 6 6.1568 -2.4891 -1.2200 25 1 -0.3634 0.4615 0.9182 26 1 -0.3633 0.5644 -0.8588 27 1 -0.3633 -1.0260 -0.0594 28 1 3.1263 -0.7995 1.2056 29 1 1.6053 -1.7197 1.2952 30 1 2.9270 -2.0233 3.0615 31 1 1.7558 -1.7726 -1.2032 32 1 1.6016 -0.2648 -2.1367 33 1 3.4609 1.4607 -0.9749 34 1 4.9998 0.8324 -1.6115 35 1 3.5867 0.9790 -2.6839 36 1 3.6582 -2.5792 -2.0355 37 1 3.7978 -1.3088 -3.2744 38 1 5.8798 -0.1089 -3.5944 39 1 8.3303 -0.1481 -3.3648 40 1 5.5452 -3.1453 -0.6185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602442090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = -78.639687 kcal Electronic energy + Delta-G solvation = -22143.724445 eV Core-core repulsion = 18593.840985 eV Total energy + Delta-G solvation = -3549.883460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.49228 -48.56443 -39.54642 -37.51181 -34.61950 -32.30231 -31.26137 -30.64417 -27.25275 -26.60592 -26.20509 -23.52262 -23.13029 -22.30417 -21.09163 -19.10292 -17.98045 -17.23836 -16.99402 -16.68865 -16.35909 -15.54078 -15.10725 -14.97604 -14.70166 -14.52898 -14.16920 -13.78603 -13.67161 -13.50124 -13.12006 -12.88904 -12.25606 -12.12849 -12.02566 -11.67952 -11.54421 -11.42208 -11.28947 -11.21428 -10.98577 -10.66679 -10.28847 -10.04955 -9.79059 -9.34236 -9.15802 -8.76412 -8.38368 -8.19525 -7.99155 -6.21996 -3.89144 0.77854 0.90546 3.18489 3.49120 3.52525 3.67815 3.70310 4.20540 4.26550 4.39857 4.55830 4.63779 4.85539 5.00475 5.16888 5.36851 5.41545 5.52964 5.55130 5.62187 5.69869 5.73798 5.78668 5.84931 5.88826 5.95337 6.13026 6.14505 6.25164 6.26825 6.41394 6.63887 6.84779 6.93500 7.15438 7.26600 7.34466 7.64518 7.83023 8.38570 8.62276 9.04419 9.81956 11.18756 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.004399 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.296011 B = 6362.976921 C = 7530.196602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 H 0.058 0.942 4 C 0.023 3.977 5 C -0.595 4.595 6 H 0.045 0.955 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.063 3.937 14 N -0.526 5.526 15 C 0.022 3.978 16 C 0.092 3.908 17 C -0.051 4.051 18 C -0.097 4.097 19 C -0.128 4.128 20 C 0.060 3.940 21 F -0.132 7.132 22 C 0.070 3.930 23 F -0.128 7.128 24 C -0.101 4.101 25 H 0.066 0.934 26 H 0.029 0.971 27 H 0.043 0.957 28 H 0.023 0.977 29 H -0.001 1.001 30 H 0.269 0.731 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.019 0.981 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 0.665 -17.097 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 H 0.076 0.924 4 C -0.014 4.014 5 C -0.634 4.634 6 H 0.064 0.936 7 C -0.190 4.190 8 N -0.554 5.554 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.249 5.249 15 C -0.126 4.126 16 C -0.036 4.036 17 C -0.052 4.052 18 C -0.116 4.116 19 C -0.147 4.147 20 C 0.040 3.960 21 F -0.111 7.111 22 C 0.050 3.950 23 F -0.107 7.107 24 C -0.120 4.120 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.017 0.983 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.650 0.531 -14.934 16.356 hybrid contribution 0.019 0.085 -2.198 2.200 sum 6.668 0.616 -17.132 18.394 Atomic orbital electron populations 1.21711 0.96216 1.00487 1.00705 1.21096 0.94311 0.99250 0.94875 0.92398 1.19155 0.96584 0.94509 0.91180 1.22123 1.38424 1.10172 0.92668 0.93650 1.25719 0.94928 0.97192 1.01165 1.70727 1.36364 1.14717 1.33601 0.83586 0.75851 0.75305 0.75693 1.21668 1.21679 1.21178 1.22324 0.85293 1.00980 0.97813 1.61891 1.10915 1.04055 1.48080 1.22487 1.01320 0.90359 0.98432 1.21090 0.89528 0.98183 0.94792 1.19713 0.96152 0.94631 0.94688 1.20987 0.92330 0.98641 0.99616 1.20990 0.95704 0.99144 0.98822 1.17692 0.77341 1.00338 1.00622 1.91514 1.28708 1.95717 1.95169 1.17700 0.91577 0.93059 0.92697 1.91540 1.84515 1.68175 1.66456 1.21060 0.91580 1.00516 0.98829 0.91454 0.95178 0.93831 0.95833 0.98307 0.92010 0.91378 0.95895 0.90583 0.91591 0.96263 0.89488 0.93782 0.84616 0.83879 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.05 37.16 0.34 -2.12 16 2 C -0.08 -1.51 2.36 -90.62 -0.21 -1.73 16 3 H 0.06 1.18 6.51 -51.93 -0.34 0.85 16 4 C 0.02 0.57 3.71 -27.88 -0.10 0.47 16 5 C -0.60 -16.85 8.36 -34.44 -0.29 -17.13 16 6 H 0.05 1.27 7.07 -52.48 -0.37 0.90 16 7 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 8 N -0.92 -28.59 13.65 55.43 0.76 -27.83 16 9 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.06 1.01 4.36 -3.83 -0.02 0.99 16 14 N -0.53 -7.98 4.09 -244.36 -1.00 -8.98 16 15 C 0.02 0.30 8.95 60.07 0.54 0.84 16 16 C 0.09 1.10 5.11 -4.97 -0.03 1.07 16 17 C -0.05 -0.60 4.87 -104.62 -0.51 -1.11 16 18 C -0.10 -0.96 8.02 -39.59 -0.32 -1.28 16 19 C -0.13 -1.30 10.02 -39.53 -0.40 -1.69 16 20 C 0.06 0.77 7.31 -39.37 -0.29 0.48 16 21 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 22 C 0.07 0.97 7.31 -39.37 -0.29 0.69 16 23 F -0.13 -1.97 17.18 2.25 0.04 -1.93 16 24 C -0.10 -1.33 9.68 -39.53 -0.38 -1.71 16 25 H 0.07 1.37 6.86 -51.93 -0.36 1.02 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.64 7.50 -51.93 -0.39 0.25 16 29 H 0.00 -0.04 8.00 -51.93 -0.42 -0.45 16 30 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 31 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 32 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 33 H 0.08 1.16 6.45 -51.93 -0.33 0.82 16 34 H 0.07 0.85 6.29 -51.93 -0.33 0.52 16 35 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 36 H 0.09 1.01 7.80 -51.93 -0.41 0.61 16 37 H 0.04 0.45 8.05 -51.93 -0.42 0.03 16 38 H 0.14 1.04 8.04 -52.49 -0.42 0.62 16 39 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -31.56 334.08 -8.07 -39.63 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.80 Total: -2.98 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.05 Total: -21.96 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.24 Total: -36.81 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.08 Total: -3.68 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.56 -8.07 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.010 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds