Wall clock time and date at job start Tue Mar 31 2020 06:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47336 * 59.99992 * 9 7 5 11 11 H 1.48497 * 109.47563 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46893 * 300.00113 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47272 * 34.99670 * 15 14 13 17 17 C 1.52996 * 109.47070 * 274.99616 * 15 14 13 18 18 C 1.50702 * 109.47313 * 154.99568 * 15 14 13 19 19 C 1.38227 * 119.98300 * 24.72229 * 18 15 14 20 20 C 1.38190 * 120.04822 * 179.76694 * 19 18 15 21 21 C 1.38495 * 120.02524 * 0.51057 * 20 19 18 22 22 F 1.35101 * 120.01685 * 179.76954 * 21 20 19 23 23 C 1.38406 * 119.97228 * 359.74551 * 21 20 19 24 24 C 1.38434 * 119.94959 * 0.02562 * 23 21 20 25 25 F 1.35100 * 120.01459 * 180.02562 * 24 23 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.97004 * 120.00016 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 33 33 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 34 34 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 35 35 H 1.09007 * 109.46955 * 179.97438 * 17 15 14 36 36 H 1.08998 * 109.47198 * 299.99629 * 17 15 14 37 37 H 1.08998 * 109.47245 * 60.00339 * 17 15 14 38 38 H 1.07994 * 119.97914 * 0.02562 * 19 18 15 39 39 H 1.07997 * 119.99024 * 180.25682 * 20 19 18 40 40 H 1.07999 * 120.02089 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 2.0920 1.9227 -5.1872 11 1 1.9928 -0.1379 -6.4622 12 1 0.0190 0.6704 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 1 3.0883 -1.0986 3.4743 17 6 1.1121 -1.6917 4.0938 18 6 2.2756 0.3920 4.7672 19 6 1.5375 1.5603 4.7326 20 6 1.6712 2.4934 5.7430 21 6 2.5529 2.2639 6.7861 22 9 2.6869 3.1784 7.7714 23 6 3.2963 1.0969 6.8190 24 6 3.1580 0.1607 5.8087 25 9 3.8826 -0.9791 5.8397 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9221 -1.8428 -4.7318 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 1.9881 0.9874 2.3967 35 1 1.4636 -2.1850 5.0000 36 1 0.1486 -1.2201 4.2869 37 1 1.0030 -2.4288 3.2983 38 1 0.8528 1.7420 3.9175 39 1 1.0911 3.4040 5.7172 40 1 3.9838 0.9169 7.6323 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602500613.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:19 Heat of formation + Delta-G solvation = -86.063452 kcal Electronic energy + Delta-G solvation = -21694.573853 eV Core-core repulsion = 18144.368474 eV Total energy + Delta-G solvation = -3550.205379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.28456 -49.24316 -39.56766 -37.10577 -34.77204 -32.39685 -31.14409 -30.56049 -28.90634 -26.79793 -25.35622 -23.89096 -23.33603 -22.25051 -20.62532 -19.22300 -18.45244 -17.47379 -16.50926 -16.28141 -16.25691 -15.83148 -15.58328 -15.24102 -14.69946 -14.61685 -14.39598 -14.09154 -13.69327 -13.37234 -12.88625 -12.72373 -12.43159 -12.17561 -11.93218 -11.89623 -11.81594 -11.47830 -11.33215 -11.01096 -10.85092 -10.74077 -10.30011 -10.26268 -9.71760 -9.36764 -9.17055 -9.00103 -8.86155 -8.33128 -8.26494 -5.97957 -3.99295 0.64047 0.71778 3.06212 3.34061 3.38655 3.40856 3.57128 4.05288 4.15576 4.32695 4.44607 4.49306 4.58787 4.90272 5.19401 5.29154 5.37800 5.45881 5.56283 5.61748 5.65216 5.72277 5.81152 5.85157 5.87786 5.99978 6.12236 6.23416 6.40058 6.46949 6.52083 6.65529 6.97932 7.14931 7.16899 7.28659 7.53597 7.68569 7.84203 8.01992 8.45622 9.06912 9.64101 11.13540 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.003033 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.828742 B = 9229.556351 C = 9648.762673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.123 3.877 16 H 0.057 0.943 17 C -0.133 4.133 18 C -0.126 4.126 19 C -0.049 4.049 20 C -0.162 4.162 21 C 0.122 3.878 22 F -0.134 7.134 23 C -0.193 4.193 24 C 0.133 3.867 25 F -0.129 7.129 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.339 0.661 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.157 0.843 39 H 0.143 0.857 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 4.867 21.895 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.312 5.312 15 C 0.013 3.987 16 H 0.075 0.925 17 C -0.191 4.191 18 C -0.127 4.127 19 C -0.067 4.067 20 C -0.180 4.180 21 C 0.103 3.897 22 F -0.113 7.113 23 C -0.213 4.213 24 C 0.113 3.887 25 F -0.107 7.107 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.158 0.842 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.174 0.826 39 H 0.161 0.839 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.684 4.443 21.826 22.337 hybrid contribution 1.028 0.591 -0.704 1.379 sum -0.656 5.034 21.122 21.723 Atomic orbital electron populations 1.21587 0.95642 1.00613 1.00118 1.21200 0.96037 0.98904 0.93958 0.92822 1.19112 0.95908 0.95582 0.90393 1.21197 1.34735 1.08286 0.90993 0.92611 1.25021 0.95327 0.95089 0.99100 1.69956 1.39030 1.21187 1.23502 0.86688 0.78904 0.80092 0.82489 1.20317 1.21386 1.20258 1.22234 0.97306 0.97890 0.89114 1.60746 1.63778 1.05719 1.01004 1.20355 0.97924 0.92548 0.87867 0.92531 1.21747 0.98958 0.97589 1.00782 1.20221 0.97666 0.97851 0.96981 1.20946 0.97036 0.90898 0.97817 1.21277 1.00356 1.02040 0.94373 1.17330 0.97848 0.87269 0.87265 1.91526 1.94792 1.64954 1.59992 1.20972 1.04497 0.94369 1.01463 1.17142 0.92780 0.83369 0.95444 1.91530 1.75533 1.47441 1.96192 0.94138 0.92782 0.93953 0.96954 0.96543 0.93030 0.91247 0.95539 0.84231 0.92873 0.91712 0.91677 0.82552 0.83890 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.89 37.16 0.33 -1.94 16 2 C -0.08 -1.61 2.48 -90.63 -0.22 -1.83 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.23 8.41 -34.44 -0.29 -14.52 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.03 4.87 -3.82 -0.02 1.01 16 14 N -0.68 -8.93 5.02 -107.95 -0.54 -9.48 16 15 C 0.12 1.46 2.60 -68.87 -0.18 1.28 16 16 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 17 C -0.13 -1.49 9.40 37.16 0.35 -1.14 16 18 C -0.13 -1.34 4.94 -104.55 -0.52 -1.85 16 19 C -0.05 -0.45 8.85 -39.60 -0.35 -0.80 16 20 C -0.16 -1.38 10.03 -39.50 -0.40 -1.78 16 21 C 0.12 1.15 7.30 -39.42 -0.29 0.86 16 22 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 23 C -0.19 -1.83 10.01 -39.45 -0.39 -2.22 16 24 C 0.13 1.41 7.24 -39.43 -0.29 1.13 16 25 F -0.13 -1.49 16.57 2.25 0.04 -1.45 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 28 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.16 7.44 -51.93 -0.39 0.78 16 33 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 34 H 0.34 4.19 7.25 -39.29 -0.28 3.91 16 35 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 38 H 0.16 1.35 6.95 -52.49 -0.37 0.98 16 39 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -29.22 337.54 -8.03 -37.24 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.88 Total: -0.77 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.48 Total: -19.75 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.19 Total: -35.63 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.73 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.22 -8.03 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602500613.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.820 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds