Wall clock time and date at job start Tue Mar 31 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47371 * 2 1 4 4 C 1.53000 * 109.46994 * 120.00423 * 2 1 3 5 5 C 1.50705 * 109.46843 * 294.99894 * 4 2 1 6 6 H 1.07991 * 120.00049 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99709 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99653 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00392 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47303 * 89.99916 * 9 7 5 11 11 H 1.48503 * 109.47020 * 210.00304 * 9 7 5 12 12 H 1.48504 * 109.46686 * 329.99926 * 9 7 5 13 13 C 1.52998 * 109.46836 * 239.99720 * 2 1 3 14 14 N 1.46904 * 109.46986 * 65.00624 * 13 2 1 15 15 C 1.46900 * 110.99826 * 179.97438 * 14 13 2 16 16 C 1.53007 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46906 * 179.97438 * 16 15 14 18 18 C 1.38418 * 120.02693 * 269.73082 * 17 16 15 19 19 F 1.35092 * 120.01489 * 0.24884 * 18 17 16 20 20 C 1.38481 * 119.97391 * 180.30235 * 18 17 16 21 21 C 1.38203 * 120.02434 * 359.96746 * 20 18 17 22 22 C 1.38212 * 120.05242 * 0.02562 * 21 20 18 23 23 C 1.38425 * 120.02344 * 90.00448 * 17 16 15 24 24 F 1.35105 * 120.00968 * 359.74649 * 23 17 16 25 25 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47152 * 299.99936 * 1 2 3 27 27 H 1.08994 * 109.47297 * 59.99592 * 1 2 3 28 28 H 1.08996 * 109.47542 * 54.99332 * 4 2 1 29 29 H 1.08999 * 109.46998 * 174.99930 * 4 2 1 30 30 H 0.97005 * 119.99553 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47515 * 305.00177 * 13 2 1 32 32 H 1.09001 * 109.47340 * 185.00018 * 13 2 1 33 33 H 1.00905 * 110.99279 * 303.94675 * 14 13 2 34 34 H 1.09007 * 109.47301 * 59.99910 * 15 14 13 35 35 H 1.09000 * 109.47403 * 299.99534 * 15 14 13 36 36 H 1.09003 * 109.46320 * 60.00395 * 16 15 14 37 37 H 1.08993 * 109.47619 * 299.99975 * 16 15 14 38 38 H 1.07997 * 119.98347 * 179.97438 * 20 18 17 39 39 H 1.08006 * 119.97638 * 180.02562 * 21 20 18 40 40 H 1.08002 * 119.98745 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0807 0.9744 2.3757 7 6 1.9931 -0.4019 3.7282 8 7 1.6456 0.2776 4.7993 9 14 2.9635 -1.9885 3.9028 10 1 4.4169 -1.6852 3.8780 11 1 2.6160 -2.6422 5.1902 12 1 2.6286 -2.8996 2.7788 13 6 2.0399 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1257 -0.6266 -3.6671 16 6 1.7023 0.1910 -4.8892 17 6 2.1894 -0.4898 -6.1423 18 6 3.4344 -0.1780 -6.6607 19 9 4.2157 0.7332 -6.0408 20 6 3.8784 -0.7997 -7.8158 21 6 3.0791 -1.7317 -8.4504 22 6 1.8359 -2.0439 -7.9336 23 6 1.3898 -1.4234 -6.7789 24 9 0.1743 -1.7283 -6.2742 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6053 -1.7198 1.2952 29 1 3.1263 -0.7996 1.2055 30 1 1.8929 -0.0454 5.6800 31 1 1.6053 -1.7198 -1.2951 32 1 3.1262 -0.7996 -1.2056 33 1 0.6528 0.1793 -2.4752 34 1 1.6919 -1.6246 -3.7300 35 1 3.2126 -0.7038 -3.6401 36 1 2.1358 1.1891 -4.8264 37 1 0.6154 0.2679 -4.9162 38 1 4.8495 -0.5563 -8.2206 39 1 3.4263 -2.2164 -9.3510 40 1 1.2120 -2.7720 -8.4307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602519699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:33 Heat of formation + Delta-G solvation = -87.425529 kcal Electronic energy + Delta-G solvation = -21395.576330 eV Core-core repulsion = 17845.311887 eV Total energy + Delta-G solvation = -3550.264443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.32704 -49.28121 -39.31605 -37.26159 -34.92732 -32.87666 -31.70330 -30.68729 -28.64988 -27.24710 -25.31377 -23.37613 -23.24449 -21.76879 -21.49710 -18.97576 -18.47691 -17.71008 -16.83176 -16.48254 -16.23913 -15.92996 -15.69715 -15.56938 -14.88790 -14.70336 -14.19114 -14.07167 -13.86589 -13.37455 -13.12949 -12.76642 -12.72858 -12.45154 -12.18360 -12.10970 -11.86272 -11.62253 -11.52083 -11.20323 -10.96882 -10.65256 -10.37338 -9.87958 -9.63902 -9.49286 -9.19034 -9.15694 -9.02249 -8.48872 -8.22852 -5.99337 -3.96072 0.55703 0.56565 2.93621 3.33711 3.40857 3.44710 3.51523 4.01135 4.02168 4.27550 4.33177 4.49425 4.63676 4.76563 4.96126 5.08901 5.30378 5.34309 5.41159 5.51260 5.54451 5.57672 5.67394 5.69986 5.72221 5.89346 5.94945 5.98967 6.17656 6.36766 6.39843 6.48713 6.79433 6.99850 7.08437 7.23965 7.33069 7.51053 7.61065 7.85609 8.60377 9.06534 9.63684 11.14130 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.002840 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.215773 B = 9857.915064 C =10070.782598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.062 3.938 14 N -0.688 5.688 15 C 0.066 3.934 16 C -0.081 4.081 17 C -0.149 4.149 18 C 0.133 3.867 19 F -0.125 7.125 20 C -0.164 4.164 21 C -0.068 4.068 22 C -0.164 4.164 23 C 0.130 3.870 24 F -0.128 7.128 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.014 0.986 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.340 0.660 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -4.557 -29.625 30.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.066 4.066 14 N -0.320 5.320 15 C -0.063 4.063 16 C -0.118 4.118 17 C -0.151 4.151 18 C 0.114 3.886 19 F -0.103 7.103 20 C -0.183 4.183 21 C -0.086 4.086 22 C -0.183 4.183 23 C 0.111 3.889 24 F -0.106 7.106 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.324 -4.111 -29.334 29.712 hybrid contribution -0.128 -1.537 0.378 1.588 sum 2.197 -5.648 -28.957 29.584 Atomic orbital electron populations 1.21750 0.96198 1.00518 1.00846 1.21032 0.95266 1.00213 0.92943 0.90976 1.19606 0.95601 0.96039 0.93421 1.21138 1.35308 1.09482 0.89086 0.90796 1.25032 0.95718 0.96910 0.95964 1.69921 1.47291 1.39286 0.97995 0.86802 0.80681 0.84521 0.77399 1.20358 1.21509 1.19135 1.22170 1.00332 0.94476 0.89667 1.60530 1.19776 1.50468 1.01234 1.21849 1.00751 0.94757 0.88969 1.20491 1.01943 0.99905 0.89472 1.19943 0.94488 1.00489 1.00175 1.17242 0.88660 0.90209 0.92501 1.91556 1.73111 1.63805 1.81825 1.21242 1.02189 0.99246 0.95607 1.20840 0.92584 0.95782 0.99363 1.21223 0.98246 1.02632 0.96221 1.17251 0.81498 0.96444 0.93737 1.91538 1.40728 1.91587 1.86775 0.94084 0.91294 0.94679 0.96807 0.97116 0.92852 0.95793 0.91479 0.84121 0.95445 0.90998 0.88981 0.90138 0.83965 0.83944 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.52 2.55 -90.62 -0.23 -1.76 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.66 8.96 -34.44 -0.31 -14.97 16 6 H 0.07 2.27 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 9 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 13 C 0.06 1.06 5.14 -3.82 -0.02 1.04 16 14 N -0.69 -10.16 6.50 -113.77 -0.74 -10.90 16 15 C 0.07 0.85 5.67 -3.82 -0.02 0.82 16 16 C -0.08 -0.89 5.25 -27.88 -0.15 -1.03 16 17 C -0.15 -1.51 5.15 -104.49 -0.54 -2.04 16 18 C 0.13 1.28 7.24 -39.43 -0.29 0.99 16 19 F -0.12 -1.38 16.47 2.25 0.04 -1.34 16 20 C -0.16 -1.15 10.03 -39.50 -0.40 -1.55 16 21 C -0.07 -0.39 10.04 -39.60 -0.40 -0.78 16 22 C -0.16 -1.14 10.02 -39.51 -0.40 -1.54 16 23 C 0.13 1.23 7.24 -39.43 -0.29 0.94 16 24 F -0.13 -1.36 16.48 2.25 0.04 -1.32 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 27 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 28 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 29 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.34 4.72 6.98 -39.29 -0.27 4.45 16 34 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.05 7.63 -51.93 -0.40 0.65 16 37 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.14 0.38 8.06 -52.48 -0.42 -0.04 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -31.24 335.98 -8.29 -39.53 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -5.90 Total: -0.39 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.89 Total: -20.59 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.03 Total: -38.39 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.24 -8.29 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602519699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.892 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds