Wall clock time and date at job start Tue Mar 31 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47565 * 2 1 4 4 N 1.46897 * 109.47307 * 120.00360 * 2 1 3 5 5 C 1.46905 * 111.00138 * 275.00424 * 4 2 1 6 6 C 1.52999 * 109.47028 * 179.97438 * 5 4 2 7 7 H 1.08996 * 109.46929 * 304.98924 * 6 5 4 8 8 C 1.52997 * 109.47317 * 64.99820 * 6 5 4 9 9 C 1.53006 * 109.46623 * 184.99640 * 6 5 4 10 10 C 1.50703 * 109.46967 * 174.99771 * 9 6 5 11 11 H 1.07996 * 119.99755 * 0.02562 * 10 9 6 12 12 C 1.37876 * 120.00135 * 179.97438 * 10 9 6 13 13 N 1.31512 * 119.99773 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99975 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47237 * 90.00441 * 14 12 10 16 16 H 1.48506 * 109.47247 * 210.00240 * 14 12 10 17 17 H 1.48500 * 109.47404 * 330.00197 * 14 12 10 18 18 C 1.50704 * 109.47463 * 240.00452 * 2 1 3 19 19 C 1.38261 * 119.99897 * 265.00562 * 18 2 1 20 20 C 1.38209 * 120.06944 * 179.97438 * 19 18 2 21 21 C 1.38255 * 120.07195 * 0.02562 * 20 19 18 22 22 C 1.38361 * 120.00061 * 0.02562 * 21 20 19 23 23 F 1.35100 * 120.03886 * 180.02562 * 22 21 20 24 24 C 1.38360 * 120.00110 * 84.72424 * 18 2 1 25 25 F 1.35102 * 120.03741 * 359.97438 * 24 18 2 26 26 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47065 * 300.00116 * 1 2 3 28 28 H 1.09004 * 109.46776 * 59.99908 * 1 2 3 29 29 H 1.00906 * 110.99758 * 38.95298 * 4 2 1 30 30 H 1.08994 * 109.47305 * 59.99331 * 5 4 2 31 31 H 1.08998 * 109.46287 * 299.99779 * 5 4 2 32 32 H 1.09002 * 109.47153 * 299.99641 * 8 6 5 33 33 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 34 34 H 1.09004 * 109.47261 * 59.99813 * 8 6 5 35 35 H 1.09001 * 109.47326 * 294.99995 * 9 6 5 36 36 H 1.09000 * 109.46904 * 55.00348 * 9 6 5 37 37 H 0.97000 * 120.00259 * 179.97438 * 13 12 10 38 38 H 1.08005 * 119.96067 * 359.97438 * 19 18 2 39 39 H 1.08001 * 119.96566 * 180.02562 * 20 19 18 40 40 H 1.08007 * 119.99728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2224 2.3469 6 6 2.5950 -0.5334 3.5744 7 1 1.9690 -1.4083 3.7500 8 6 4.0385 -0.9792 3.3328 9 6 2.5427 0.3847 4.7972 10 6 2.9305 -0.3945 6.0275 11 1 3.1888 -1.4399 5.9453 12 6 2.9564 0.2274 7.2578 13 7 2.6423 1.5005 7.3577 14 14 3.4378 -0.7384 8.7825 15 1 4.9063 -0.6474 8.9830 16 1 2.7407 -0.1743 9.9663 17 1 3.0489 -2.1612 8.6105 18 6 2.0324 -0.7103 -1.2305 19 6 2.3612 -2.0518 -1.1685 20 6 2.8216 -2.7048 -2.2963 21 6 2.9549 -2.0179 -3.4886 22 6 2.6278 -0.6751 -3.5537 23 9 2.7573 -0.0031 -4.7186 24 6 2.1592 -0.0214 -2.4237 25 9 1.8323 1.2880 -2.4867 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.4495 -1.4980 1.4099 30 1 1.0871 0.6162 2.5526 31 1 2.7588 1.0460 2.1182 32 1 4.0758 -1.6333 2.4617 33 1 4.4038 -1.5174 4.2075 34 1 4.6645 -0.1043 3.1573 35 1 3.2363 1.2141 4.6589 36 1 1.5313 0.7730 4.9170 37 1 2.6602 1.9380 8.2232 38 1 2.2580 -2.5900 -0.2378 39 1 3.0775 -3.7529 -2.2460 40 1 3.3144 -2.5295 -4.3693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602583433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:36 Heat of formation + Delta-G solvation = -85.770559 kcal Electronic energy + Delta-G solvation = -21811.445857 eV Core-core repulsion = 18261.253179 eV Total energy + Delta-G solvation = -3550.192678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.60024 -48.68061 -39.51139 -37.22419 -34.85260 -32.43537 -30.87926 -30.41652 -28.96500 -26.76118 -25.34421 -24.11096 -23.03783 -22.30521 -20.95530 -19.20714 -18.02556 -17.35627 -17.03469 -16.45924 -16.31654 -15.32222 -15.09390 -14.96858 -14.75095 -14.71378 -14.44079 -14.22769 -13.57756 -13.25770 -12.98249 -12.71309 -12.40274 -12.29167 -12.09610 -12.06878 -11.59593 -11.46251 -11.36574 -11.05661 -10.85375 -10.79387 -10.30600 -10.29041 -9.73167 -9.20833 -9.06107 -8.95735 -8.91238 -8.34023 -8.26036 -5.98664 -3.99958 0.75919 0.80496 3.18655 3.32263 3.38715 3.41463 3.55449 4.11014 4.23924 4.39357 4.48304 4.63506 4.73407 4.94856 5.02322 5.09796 5.37197 5.38742 5.55489 5.59963 5.66357 5.73748 5.79141 5.84656 5.96338 6.03394 6.10287 6.14077 6.38581 6.51613 6.57210 6.64493 6.96763 7.14138 7.15867 7.26920 7.52393 7.67928 7.83473 8.01342 8.44951 9.06470 9.63565 11.12870 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034516 B = 0.003017 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.014717 B = 9279.389250 C = 9654.240063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.119 3.881 3 H 0.092 0.908 4 N -0.678 5.678 5 C 0.064 3.936 6 C -0.082 4.082 7 H 0.054 0.946 8 C -0.123 4.123 9 C 0.027 3.973 10 C -0.513 4.513 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.890 3.110 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.069 4.069 19 C -0.077 4.077 20 C -0.102 4.102 21 C -0.135 4.135 22 C 0.062 3.938 23 F -0.133 7.133 24 C 0.065 3.935 25 F -0.129 7.129 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.340 0.660 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.259 0.741 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -7.205 -21.272 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.009 3.991 3 H 0.111 0.889 4 N -0.309 5.309 5 C -0.064 4.064 6 C -0.101 4.101 7 H 0.072 0.928 8 C -0.180 4.180 9 C -0.010 4.010 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.718 3.282 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.071 4.071 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.154 4.154 22 C 0.042 3.958 23 F -0.111 7.111 24 C 0.045 3.955 25 F -0.107 7.107 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.164 0.836 39 H 0.157 0.843 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.727 -6.889 -21.337 22.488 hybrid contribution -0.676 0.141 0.844 1.091 sum -2.403 -6.748 -20.493 21.709 Atomic orbital electron populations 1.22457 0.95631 1.02578 1.02897 1.20340 0.93032 0.97732 0.88025 0.88950 1.60629 1.56328 1.10118 1.03792 1.22213 0.99262 0.95182 0.89788 1.21201 0.96286 0.98675 0.93914 0.92759 1.21593 0.96291 1.00177 0.99972 1.19121 0.96943 0.94341 0.90629 1.21229 1.45327 0.96533 0.92045 0.92560 1.25022 0.95590 0.94885 0.99064 1.69963 1.49136 1.10044 1.24507 0.86631 0.78572 0.80205 0.82810 1.20713 1.21333 1.19911 1.19903 0.99450 0.94811 0.92945 1.21036 0.96494 0.92922 0.99100 1.21123 0.98667 1.00644 0.91591 1.21053 1.02385 0.91662 1.00272 1.17639 1.05388 0.91476 0.81266 1.91514 1.93881 1.80262 1.45491 1.17527 1.04723 0.79261 0.93998 1.91511 1.90321 1.32047 1.96851 0.92029 0.91400 0.92071 0.84193 0.95328 0.91384 0.93947 0.92763 0.94161 0.96557 0.96921 0.93085 0.83637 0.84325 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.14 37.16 0.34 -1.52 16 2 C 0.12 1.41 2.57 -68.87 -0.18 1.24 16 3 H 0.09 1.21 7.46 -51.93 -0.39 0.83 16 4 N -0.68 -8.76 4.71 -107.95 -0.51 -9.27 16 5 C 0.06 1.03 4.87 -3.82 -0.02 1.01 16 6 C -0.08 -1.59 2.48 -90.62 -0.22 -1.82 16 7 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 8 C -0.12 -2.29 8.89 37.16 0.33 -1.96 16 9 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 10 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 11 H 0.06 1.51 7.05 -52.49 -0.37 1.14 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 14 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.07 -0.78 5.06 -104.57 -0.53 -1.31 16 19 C -0.08 -0.73 9.32 -39.58 -0.37 -1.10 16 20 C -0.10 -0.81 10.04 -39.59 -0.40 -1.20 16 21 C -0.13 -1.16 10.02 -39.53 -0.40 -1.56 16 22 C 0.06 0.70 7.31 -39.37 -0.29 0.41 16 23 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 24 C 0.07 0.79 7.25 -39.37 -0.29 0.51 16 25 F -0.13 -1.72 16.49 2.25 0.04 -1.68 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.07 0.75 7.45 -51.93 -0.39 0.36 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.34 3.96 7.90 -39.29 -0.31 3.65 16 30 H 0.03 0.47 7.44 -51.93 -0.39 0.08 16 31 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 32 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 33 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.15 1.26 6.89 -52.48 -0.36 0.90 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -29.85 338.00 -8.05 -37.90 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.90 Total: -1.17 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.53 Total: -19.72 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.23 Total: -35.36 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.85 -8.05 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602583433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.867 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds