Wall clock time and date at job start Tue Mar 31 2020 06:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47220 * 60.00221 * 9 7 5 11 11 H 1.48500 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47296 * 300.00052 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 179.97438 * 16 15 14 18 18 C 1.38248 * 119.96424 * 269.72647 * 17 16 15 19 19 C 1.38215 * 120.06949 * 179.76515 * 18 17 16 20 20 C 1.38413 * 119.99881 * 0.51168 * 19 18 17 21 21 F 1.35099 * 120.03294 * 179.72333 * 20 19 18 22 22 C 1.38649 * 119.92957 * 359.74053 * 20 19 18 23 23 F 1.35093 * 120.03614 * 180.02562 * 22 20 19 24 24 C 1.38218 * 119.96168 * 89.99811 * 17 16 15 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 37 37 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 38 38 H 1.08006 * 119.96698 * 0.02562 * 18 17 16 39 39 H 1.08002 * 119.99917 * 180.25105 * 19 18 17 40 40 H 1.08004 * 120.00055 * 359.95865 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.0920 1.9237 -5.1865 11 1 1.9947 -0.1368 -6.4621 12 1 0.0199 0.6700 -5.3096 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1893 -0.4899 6.1424 18 6 1.3861 -1.4168 6.7802 19 6 1.8317 -2.0466 7.9270 20 6 3.0790 -1.7418 8.4439 21 9 3.5129 -2.3529 9.5679 22 6 3.8824 -0.8083 7.8071 23 9 5.1003 -0.5095 8.3094 24 6 3.4354 -0.1833 6.6559 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 2.1373 1.1894 4.8260 37 1 0.6164 0.2691 4.9165 38 1 0.4111 -1.6521 6.3797 39 1 1.2049 -2.7736 8.4221 40 1 4.0604 0.5438 6.1587 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:50 Heat of formation + Delta-G solvation = -93.290155 kcal Electronic energy + Delta-G solvation = -20822.799641 eV Core-core repulsion = 17272.280889 eV Total energy + Delta-G solvation = -3550.518752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.77012 -48.84748 -39.61059 -37.07218 -34.72003 -32.75054 -31.58426 -31.13542 -28.28217 -26.73433 -25.10337 -23.66191 -23.25302 -22.09665 -21.47132 -19.07706 -18.24773 -17.52932 -17.24426 -16.61857 -16.33067 -15.62948 -15.26480 -15.19797 -14.82266 -14.56052 -14.40104 -14.25155 -13.90293 -13.84001 -13.12924 -12.78277 -12.67358 -12.23433 -12.05789 -11.82177 -11.53711 -11.47487 -11.42298 -11.16226 -10.85094 -10.74220 -10.30320 -10.26369 -9.71392 -9.45914 -9.17361 -9.02082 -8.90189 -8.33303 -8.19830 -5.98116 -3.99436 0.52985 0.61146 2.95617 3.33922 3.38449 3.40739 3.42535 3.95999 4.09626 4.19392 4.46537 4.54998 4.71957 4.73090 4.92329 5.08658 5.34522 5.37632 5.39350 5.43718 5.59690 5.61584 5.65275 5.71098 5.86961 5.92098 6.10509 6.13588 6.37602 6.39159 6.52524 6.66250 6.98506 7.15894 7.17763 7.30871 7.58542 7.68602 7.84231 8.01904 8.45668 9.06797 9.63951 11.13405 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.040043 B = 0.002254 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.087452 B =12420.631183 C =12618.888675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.062 3.938 16 C -0.081 4.081 17 C -0.055 4.055 18 C -0.095 4.095 19 C -0.123 4.123 20 C 0.058 3.942 21 F -0.131 7.131 22 C 0.069 3.931 23 F -0.130 7.130 24 C -0.124 4.124 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.337 0.663 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 1.191 24.422 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.118 4.118 17 C -0.056 4.056 18 C -0.114 4.114 19 C -0.141 4.141 20 C 0.038 3.962 21 F -0.110 7.110 22 C 0.049 3.951 23 F -0.108 7.108 24 C -0.143 4.143 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.884 0.767 24.377 24.462 hybrid contribution 1.186 0.492 -0.613 1.423 sum -0.698 1.259 23.764 23.808 Atomic orbital electron populations 1.21589 0.95697 1.00571 1.00150 1.21202 0.96021 0.98908 0.94009 0.92824 1.19122 0.95907 0.95591 0.90447 1.21198 1.34692 1.08291 0.90992 0.92608 1.25026 0.95327 0.95107 0.99111 1.69953 1.38986 1.21263 1.23502 0.86685 0.78906 0.80091 0.82475 1.20313 1.21382 1.20255 1.22159 0.97235 0.97734 0.89350 1.60546 1.63996 1.05826 1.01503 1.21910 0.97438 0.98249 0.89113 1.20653 1.02661 0.98577 0.89953 1.19858 0.92895 0.96213 0.96657 1.21084 1.00649 0.95412 0.94216 1.21114 0.94008 1.01498 0.97520 1.17719 0.94976 0.96945 0.86584 1.91526 1.89751 1.81344 1.48373 1.17691 0.82256 0.99190 0.95956 1.91533 1.40417 1.92102 1.86784 1.21044 0.97270 1.01348 0.94636 0.94176 0.93930 0.92776 0.96951 0.96555 0.93028 0.91508 0.95717 0.84531 0.90890 0.95362 0.90496 0.89232 0.83895 0.83619 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.05 5.07 -3.83 -0.02 1.03 16 14 N -0.69 -8.94 5.96 -113.78 -0.68 -9.62 16 15 C 0.06 0.65 5.67 -3.82 -0.02 0.63 16 16 C -0.08 -0.64 5.60 -27.88 -0.16 -0.80 16 17 C -0.06 -0.44 5.13 -104.63 -0.54 -0.97 16 18 C -0.10 -0.67 9.69 -39.59 -0.38 -1.06 16 19 C -0.12 -0.91 10.02 -39.53 -0.40 -1.31 16 20 C 0.06 0.55 7.31 -39.36 -0.29 0.27 16 21 F -0.13 -1.41 17.18 2.25 0.04 -1.37 16 22 C 0.07 0.69 7.31 -39.37 -0.29 0.40 16 23 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 24 C -0.12 -1.05 9.68 -39.53 -0.38 -1.44 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 27 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 33 H 0.34 4.09 8.73 -39.29 -0.34 3.74 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.09 0.68 8.08 -51.93 -0.42 0.27 16 38 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -30.17 343.92 -8.68 -38.85 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.10 Total: -2.42 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.88 Total: -19.59 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.06 Total: -35.79 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.17 -8.68 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.437 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds