Wall clock time and date at job start Tue Mar 31 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47068 * 300.00244 * 16 15 14 18 18 F 1.39904 * 109.47044 * 59.99433 * 16 15 14 19 19 C 1.50698 * 109.47288 * 179.97438 * 16 15 14 20 20 C 1.38232 * 120.00018 * 269.72951 * 19 16 15 21 21 C 1.38238 * 119.99702 * 179.76865 * 20 19 16 22 22 C 1.38233 * 119.99953 * 0.49904 * 21 20 19 23 23 C 1.38231 * 120.00197 * 359.75591 * 22 21 20 24 24 C 1.38233 * 119.99771 * 89.99721 * 19 16 15 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.08000 * 119.99932 * 359.97438 * 20 19 16 37 37 H 1.08000 * 119.99380 * 180.23102 * 21 20 19 38 38 H 1.08004 * 119.99577 * 179.72485 * 22 21 20 39 39 H 1.08000 * 120.00261 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00127 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 9 2.2603 1.4723 4.8082 18 9 0.3082 0.2912 4.9242 19 6 2.1893 -0.4899 6.1424 20 6 1.3868 -1.4169 6.7807 21 6 1.8347 -2.0454 7.9276 22 6 3.0808 -1.7394 8.4418 23 6 3.8811 -0.8085 7.8064 24 6 3.4354 -0.1838 6.6566 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 0.4113 -1.6525 6.3816 37 1 1.2092 -2.7724 8.4242 38 1 3.4288 -2.2272 9.3403 39 1 4.8545 -0.5690 8.2084 40 1 4.0605 0.5440 6.1605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602642155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:55 Heat of formation + Delta-G solvation = -93.261573 kcal Electronic energy + Delta-G solvation = -21692.832091 eV Core-core repulsion = 18142.314579 eV Total energy + Delta-G solvation = -3550.517513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.03395 -47.03139 -39.47720 -36.99759 -34.30522 -32.59009 -31.69532 -31.30756 -28.26485 -26.68836 -25.10734 -23.42643 -22.98754 -22.13367 -21.35646 -19.18391 -18.11176 -17.53454 -16.68891 -16.30223 -16.17945 -15.26994 -14.95004 -14.91693 -14.62089 -14.07604 -13.96679 -13.86068 -13.68852 -13.25326 -13.18585 -12.97942 -12.70225 -12.35935 -12.23551 -11.93589 -11.54020 -11.49235 -11.36101 -10.97883 -10.85359 -10.74620 -10.28023 -10.23714 -9.70989 -9.37523 -9.33414 -9.14002 -8.95281 -8.32362 -8.30261 -5.97079 -3.98062 0.78273 0.99071 3.28374 3.33949 3.39190 3.40298 3.44137 4.00907 4.19215 4.24118 4.49427 4.60674 4.63865 4.72107 4.84372 5.06099 5.10336 5.38746 5.39645 5.41168 5.46654 5.63622 5.67461 5.82391 5.99991 6.08053 6.09329 6.13090 6.37481 6.51022 6.52007 6.68721 6.94320 7.13079 7.19066 7.26149 7.48783 7.69468 7.84913 8.03023 8.47048 9.08230 9.65366 11.14526 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.002810 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.790622 B = 9961.410177 C =10127.976130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.683 5.683 15 C 0.025 3.975 16 C 0.344 3.656 17 F -0.195 7.195 18 F -0.183 7.183 19 C -0.152 4.152 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.122 4.122 24 C -0.087 4.087 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.013 0.987 29 H 0.017 0.983 30 H 0.259 0.741 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.344 0.656 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -0.416 25.210 25.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.314 5.314 15 C -0.105 4.105 16 C 0.308 3.692 17 F -0.176 7.176 18 F -0.164 7.164 19 C -0.153 4.153 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.105 4.105 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.163 0.837 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.500 -0.779 25.090 25.107 hybrid contribution 0.721 0.751 -0.947 1.407 sum 1.221 -0.028 24.143 24.174 Atomic orbital electron populations 1.21599 0.95562 1.00650 1.00311 1.21214 0.96171 0.98994 0.93770 0.92676 1.19122 0.95904 0.95602 0.90369 1.21238 1.34586 1.08279 0.90956 0.92518 1.25021 0.95342 0.95094 0.99112 1.69964 1.39129 1.21264 1.23385 0.86623 0.78948 0.79801 0.82811 1.20762 1.21304 1.19859 1.22202 0.97427 0.97752 0.88909 1.60510 1.63822 1.06211 1.00891 1.22900 0.99773 0.98873 0.88981 1.19506 0.75276 0.79873 0.94584 1.92998 1.85134 1.42284 1.97224 1.93036 1.29700 1.96290 1.97388 1.20303 0.97003 1.00895 0.97137 1.21027 0.99494 0.94719 0.95049 1.21178 0.96486 1.00100 0.96203 1.21319 0.94303 0.97075 0.99589 1.21164 1.00206 0.97037 0.95600 1.21002 0.94757 0.98787 0.95955 0.93839 0.92665 0.94108 0.96909 0.96489 0.93102 0.91201 0.95352 0.83722 0.88105 0.92401 0.84887 0.85301 0.85575 0.85352 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16 3 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.07 1.12 5.07 -3.83 -0.02 1.10 16 14 N -0.68 -10.26 5.88 -113.78 -0.67 -10.93 16 15 C 0.03 0.32 5.21 -3.82 -0.02 0.30 16 16 C 0.34 4.24 1.99 -27.88 -0.06 4.19 16 17 F -0.20 -2.59 15.68 2.25 0.04 -2.55 16 18 F -0.18 -2.58 16.12 2.25 0.04 -2.55 16 19 C -0.15 -1.61 4.99 -104.63 -0.52 -2.13 16 20 C -0.08 -0.80 9.40 -39.58 -0.37 -1.17 16 21 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 22 C -0.10 -0.74 10.05 -39.59 -0.40 -1.14 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 24 C -0.09 -0.81 9.40 -39.58 -0.37 -1.19 16 25 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 26 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.34 5.11 8.25 -39.29 -0.32 4.79 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 1.17 7.60 -52.49 -0.40 0.77 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 40 H 0.13 1.12 7.61 -52.48 -0.40 0.72 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -30.93 340.55 -8.75 -39.68 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.04 Total: 0.17 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.96 Total: -19.42 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.07 Total: -37.28 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.93 -8.75 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602642155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.580 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds