Wall clock time and date at job start Tue Mar 31 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47068 * 300.00244 * 16 15 14 18 18 F 1.39904 * 109.47044 * 59.99433 * 16 15 14 19 19 C 1.50698 * 109.47288 * 179.97438 * 16 15 14 20 20 C 1.38232 * 120.00018 * 269.72951 * 19 16 15 21 21 C 1.38238 * 119.99702 * 179.76865 * 20 19 16 22 22 C 1.38233 * 119.99953 * 0.49904 * 21 20 19 23 23 C 1.38231 * 120.00197 * 359.75591 * 22 21 20 24 24 C 1.38233 * 119.99771 * 89.99721 * 19 16 15 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 33 33 H 1.00905 * 110.99804 * 303.95405 * 14 13 2 34 34 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 35 35 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 36 36 H 1.08000 * 119.99932 * 359.97438 * 20 19 16 37 37 H 1.08000 * 119.99380 * 180.23102 * 21 20 19 38 38 H 1.08004 * 119.99577 * 179.72485 * 22 21 20 39 39 H 1.08000 * 120.00261 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00127 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 9 2.2603 1.4723 4.8082 18 9 0.3082 0.2912 4.9242 19 6 2.1893 -0.4899 6.1424 20 6 1.3868 -1.4169 6.7807 21 6 1.8347 -2.0454 7.9276 22 6 3.0808 -1.7394 8.4418 23 6 3.8811 -0.8085 7.8064 24 6 3.4354 -0.1838 6.6566 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9246 -1.8413 -4.7316 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.9881 0.9873 2.3966 34 1 1.6920 -1.6245 3.7300 35 1 3.2126 -0.7037 3.6401 36 1 0.4113 -1.6525 6.3816 37 1 1.2092 -2.7724 8.4242 38 1 3.4288 -2.2272 9.3403 39 1 4.8545 -0.5690 8.2084 40 1 4.0605 0.5440 6.1605 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602642155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:54 Heat of formation + Delta-G solvation = -110.077699 kcal Electronic energy + Delta-G solvation = -21693.561293 eV Core-core repulsion = 18142.314579 eV Total energy + Delta-G solvation = -3551.246714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.04032 -48.05432 -40.10350 -38.45313 -35.89232 -34.17930 -32.92734 -31.91084 -29.56651 -28.46861 -26.54865 -24.81516 -23.61499 -23.58682 -22.19252 -20.84937 -18.90768 -18.53720 -18.46627 -17.69023 -16.94470 -16.56831 -16.43582 -15.71038 -15.58395 -15.48064 -15.38154 -14.84539 -14.63293 -14.50261 -14.15377 -14.13296 -14.03481 -13.66431 -13.43805 -13.27952 -13.12804 -12.78986 -12.73771 -12.57765 -12.22622 -12.07492 -12.06002 -11.75609 -11.52366 -11.10971 -10.93625 -10.53258 -9.98600 -9.94976 -9.54002 -8.17715 -6.26464 0.13419 0.37943 1.40288 1.41068 1.52274 2.41338 2.49794 2.63647 3.00942 3.15895 3.18710 3.36132 3.78960 3.97396 4.04224 4.10733 4.22669 4.24402 4.38541 4.44502 4.49792 4.51969 4.66928 4.82990 4.84861 4.88111 4.99609 5.04952 5.26370 5.41158 5.42216 5.44276 5.49923 5.50872 5.53734 5.77393 5.83062 5.88432 5.94345 6.23966 6.30649 6.89199 7.41700 8.94368 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.002810 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.790622 B = 9961.410177 C =10127.976130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.079 3.921 14 N -0.686 5.686 15 C 0.028 3.972 16 C 0.344 3.656 17 F -0.203 7.203 18 F -0.196 7.196 19 C -0.170 4.170 20 C -0.099 4.099 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.124 4.124 24 C -0.101 4.101 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.037 0.963 28 H -0.011 1.011 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.346 0.654 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.086 -0.204 26.716 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.189 1.189 13 C -0.050 4.050 14 N -0.318 5.318 15 C -0.102 4.102 16 C 0.308 3.692 17 F -0.184 7.184 18 F -0.177 7.177 19 C -0.171 4.171 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.120 4.120 23 C -0.142 4.142 24 C -0.119 4.119 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.500 -0.557 26.616 26.627 hybrid contribution 0.747 0.655 -1.331 1.661 sum 1.247 0.098 25.285 25.316 Atomic orbital electron populations 1.21494 0.94766 1.00512 1.00388 1.21026 0.96696 0.98508 0.93177 0.92814 1.19002 0.94235 0.94748 0.92448 1.21639 1.34430 1.08558 0.92125 0.92214 1.25931 0.95280 0.96094 1.02587 1.70091 1.40277 1.22905 1.24297 0.85522 0.78986 0.78407 0.78600 1.19897 1.20859 1.18875 1.21897 0.97198 0.97413 0.88467 1.60415 1.64156 1.06235 1.00962 1.22948 1.00516 0.98985 0.87800 1.19630 0.74556 0.79534 0.95520 1.92977 1.85181 1.42949 1.97331 1.93003 1.30874 1.96345 1.97506 1.20225 0.97971 1.01949 0.96978 1.21165 0.99573 0.95050 0.95941 1.21501 0.97109 1.00022 0.95479 1.21718 0.93759 0.96373 1.00152 1.21493 1.01258 0.96594 0.94830 1.21151 0.94493 0.99370 0.96870 0.91880 0.94299 0.94343 0.99298 0.98897 0.92916 0.91177 0.95386 0.83576 0.87412 0.91217 0.84983 0.83016 0.82689 0.83060 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 8.89 71.98 0.64 -3.86 16 2 C -0.08 -3.11 2.48 -10.79 -0.03 -3.13 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.19 8.41 25.60 0.22 -29.97 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 8 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 9 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.08 2.69 5.07 86.30 0.44 3.12 16 14 N -0.69 -20.10 5.88 -513.89 -3.02 -23.12 16 15 C 0.03 0.67 5.21 86.30 0.45 1.12 16 16 C 0.34 8.32 1.99 29.85 0.06 8.38 16 17 F -0.20 -5.33 15.68 44.97 0.71 -4.62 16 18 F -0.20 -5.48 16.12 44.97 0.72 -4.75 16 19 C -0.17 -3.47 4.99 -19.87 -0.10 -3.56 16 20 C -0.10 -1.76 9.40 22.27 0.21 -1.55 16 21 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 22 C -0.10 -1.15 10.05 22.27 0.22 -0.93 16 23 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 24 C -0.10 -1.77 9.40 22.27 0.21 -1.56 16 25 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 26 H 0.04 1.63 6.95 -2.39 -0.02 1.61 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.35 10.01 8.25 -89.69 -0.74 9.27 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.13 2.26 7.60 -2.91 -0.02 2.23 16 37 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.13 2.17 7.61 -2.91 -0.02 2.15 16 Total: -1.00 -66.45 340.55 4.36 -62.09 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.28 Total: 13.02 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 3.36 Total: -32.47 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.74 Total: -80.14 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.43 Total: -9.38 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.45 4.36 -62.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602642155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.992 kcal (2) G-P(sol) polarization free energy of solvation -66.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds