Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47010 * 2 1 4 4 C 1.52995 * 109.47126 * 120.00135 * 2 1 3 5 5 C 1.50697 * 109.47015 * 185.00265 * 4 2 1 6 6 C 1.38393 * 120.00632 * 125.00361 * 5 4 2 7 7 N 1.32126 * 120.00111 * 179.97438 * 6 5 4 8 8 C 1.32157 * 119.99639 * 359.97438 * 7 6 5 9 9 C 1.38342 * 120.00366 * 0.25185 * 8 7 6 10 10 N 1.32131 * 119.99938 * 304.97440 * 5 4 2 11 11 N 1.46492 * 109.46902 * 240.00446 * 2 1 3 12 12 C 1.39681 * 120.00670 * 84.99902 * 11 2 1 13 13 C 1.39337 * 119.94769 * 359.97438 * 12 11 2 14 14 C 1.38484 * 120.42565 * 180.02562 * 13 12 11 15 15 C 1.37684 * 120.32462 * 359.97438 * 14 13 12 16 16 C 1.40754 * 119.89349 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.21136 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99685 * 24.32740 * 17 16 15 19 19 C 1.39933 * 120.00266 * 204.33350 * 17 16 15 20 20 N 1.30824 * 119.99783 * 17.73393 * 19 17 16 21 21 Si 1.86803 * 119.99762 * 197.73358 * 19 17 16 22 22 H 1.48501 * 109.47053 * 94.69113 * 21 19 17 23 23 H 1.48501 * 109.46651 * 214.68975 * 21 19 17 24 24 H 1.48499 * 109.47246 * 334.68921 * 21 19 17 25 25 C 1.38281 * 119.95613 * 179.72869 * 12 11 2 26 26 H 1.08999 * 109.47553 * 59.99635 * 1 2 3 27 27 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47005 * 299.99726 * 1 2 3 29 29 H 1.09006 * 109.47220 * 65.00104 * 4 2 1 30 30 H 1.09003 * 109.47292 * 305.00242 * 4 2 1 31 31 H 1.07998 * 119.99584 * 359.94934 * 6 5 4 32 32 H 1.07998 * 119.99368 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.99614 * 179.72481 * 9 8 7 34 34 H 0.97013 * 119.99931 * 264.99451 * 11 2 1 35 35 H 1.07997 * 119.78818 * 359.97438 * 13 12 11 36 36 H 1.07997 * 119.83842 * 180.02562 * 14 13 12 37 37 H 1.07994 * 120.05450 * 180.02562 * 15 14 13 38 38 H 0.97003 * 119.99680 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.16072 * 359.96799 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6148 1.3127 6 6 4.1518 -0.0943 2.4406 7 7 5.4686 -0.0015 2.4964 8 6 6.2033 -0.4063 1.4752 9 6 5.5934 -0.9224 0.3458 10 7 4.2766 -1.0191 0.2916 11 7 2.0183 -0.6905 -1.1962 12 6 2.1517 0.0063 -2.3994 13 6 1.8195 1.3581 -2.4609 14 6 1.9475 2.0583 -3.6488 15 6 2.4053 1.4258 -4.7828 16 6 2.7447 0.0606 -4.7360 17 6 3.2150 -0.5959 -5.8968 18 1 3.6837 -0.0272 -6.6863 19 6 3.0730 -1.9823 -6.0226 20 7 2.2215 -2.6241 -5.2646 21 14 4.0994 -2.9166 -7.2729 22 1 5.3176 -3.4511 -6.6130 23 1 3.3025 -4.0408 -7.8264 24 1 4.4938 -2.0006 -8.3732 25 6 2.6180 -0.6452 -3.5265 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -1.7716 1.2055 30 1 1.6054 -0.2618 2.1370 31 1 3.5513 0.2365 3.2751 32 1 7.2796 -0.3301 1.5206 33 1 6.1938 -1.2490 -0.4905 34 1 2.2491 -1.6318 -1.1527 35 1 1.4592 1.8628 -1.5768 36 1 1.6877 3.1059 -3.6857 37 1 2.5037 1.9762 -5.7068 38 1 2.1229 -3.5851 -5.3521 39 1 2.8800 -1.6918 -3.4789 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602680025.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = 64.704868 kcal Electronic energy + Delta-G solvation = -21544.626646 eV Core-core repulsion = 18451.648258 eV Total energy + Delta-G solvation = -3092.978387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03931 -38.02651 -36.18303 -34.10910 -33.45919 -32.41118 -30.65141 -29.34528 -27.28493 -26.88967 -25.08606 -24.52384 -23.02255 -21.45071 -20.51585 -19.50558 -17.54650 -17.09420 -16.95325 -16.09153 -15.58117 -15.30334 -14.75587 -14.53486 -14.26857 -13.93291 -13.21797 -13.01183 -12.74668 -12.56203 -12.33561 -12.06881 -11.89095 -11.59744 -11.48767 -11.38618 -11.23458 -11.02669 -10.94558 -10.68967 -10.52643 -10.25714 -9.51911 -9.33456 -9.21801 -9.16168 -8.95050 -8.61104 -7.21261 -6.64675 -5.98571 -4.22893 0.79640 1.21533 2.92698 3.13759 3.17861 3.33342 3.43547 3.73063 4.03321 4.07479 4.26907 4.36718 4.53079 4.75686 4.81817 5.05348 5.18564 5.24523 5.44238 5.56040 5.61521 5.74745 5.81281 5.96268 5.98286 6.27641 6.36367 6.38936 6.54775 6.70411 6.98125 7.21467 7.24131 7.32433 7.50026 7.57347 7.86895 7.94420 8.06563 8.22389 8.28192 8.59937 8.90784 8.96159 9.11092 9.24398 10.33687 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.005036 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.766725 B = 5558.163844 C = 6337.882132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.166 3.834 3 H 0.069 0.931 4 C -0.077 4.077 5 C 0.088 3.912 6 C 0.042 3.958 7 N -0.442 5.442 8 C 0.033 3.967 9 C 0.061 3.939 10 N -0.407 5.407 11 N -0.738 5.738 12 C 0.228 3.772 13 C -0.304 4.304 14 C -0.067 4.067 15 C -0.262 4.262 16 C 0.139 3.861 17 C -0.466 4.466 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.792 5.792 21 Si 0.902 3.098 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.229 4.229 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.393 0.607 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.276 0.724 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 0.350 13.589 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.059 3.941 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.053 4.053 6 C -0.118 4.118 7 N -0.156 5.156 8 C -0.126 4.126 9 C -0.099 4.099 10 N -0.122 5.122 11 N -0.370 5.370 12 C 0.128 3.872 13 C -0.327 4.327 14 C -0.086 4.086 15 C -0.282 4.282 16 C 0.136 3.864 17 C -0.496 4.496 18 H 0.092 0.908 19 C -0.138 4.138 20 N -0.418 5.418 21 Si 0.727 3.273 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.187 1.187 25 C -0.253 4.253 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.186 0.814 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.920 0.257 13.744 13.880 hybrid contribution 0.558 -0.765 -0.611 1.127 sum 2.478 -0.508 13.133 13.375 Atomic orbital electron populations 1.22311 0.96474 1.01968 1.01803 1.20467 0.92846 0.96444 0.84391 0.91251 1.20927 0.87905 1.02955 0.99830 1.22277 0.97934 0.94714 0.90345 1.23561 0.91682 0.97995 0.98582 1.68390 1.06533 1.12534 1.28148 1.23703 1.01523 0.96607 0.90775 1.23882 0.91806 0.95796 0.98461 1.68442 1.05968 1.12001 1.25768 1.44333 1.74788 1.11638 1.06280 1.17583 0.93769 0.90640 0.85169 1.19891 1.21369 0.93797 0.97627 1.20258 0.98471 0.96620 0.93275 1.20825 1.13997 0.96607 0.96793 1.17320 0.86646 0.90474 0.91974 1.19546 1.35030 0.91814 1.03240 0.90781 1.25838 0.93651 0.98164 0.96143 1.69876 1.26909 1.09805 1.35228 0.86411 0.80513 0.79279 0.81101 1.19547 1.20493 1.18718 1.20690 1.13211 1.00601 0.90797 0.91564 0.92695 0.92963 0.89356 0.89091 0.81879 0.81724 0.81441 0.77283 0.89871 0.89991 0.89671 0.91344 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.42 37.16 0.35 -1.90 16 2 C 0.17 2.46 2.25 -67.94 -0.15 2.30 16 3 H 0.07 1.13 6.47 -51.93 -0.34 0.79 16 4 C -0.08 -0.88 5.20 -27.89 -0.15 -1.02 16 5 C 0.09 1.16 6.18 -82.41 -0.51 0.65 16 6 C 0.04 0.50 10.85 -17.37 -0.19 0.31 16 7 N -0.44 -5.68 10.50 -13.06 -0.14 -5.82 16 8 C 0.03 0.39 11.22 -17.37 -0.20 0.20 16 9 C 0.06 0.80 11.22 -17.38 -0.20 0.61 16 10 N -0.41 -6.23 8.76 -9.29 -0.08 -6.31 16 11 N -0.74 -13.87 4.02 -52.22 -0.21 -14.08 16 12 C 0.23 5.31 6.63 -83.86 -0.56 4.75 16 13 C -0.30 -6.99 8.85 -39.08 -0.35 -7.34 16 14 C -0.07 -1.60 10.02 -39.69 -0.40 -2.00 16 15 C -0.26 -6.78 9.79 -38.83 -0.38 -7.16 16 16 C 0.14 3.84 5.57 -106.85 -0.60 3.25 16 17 C -0.47 -12.81 9.05 -37.74 -0.34 -13.16 16 18 H 0.07 1.98 7.91 -52.49 -0.41 1.56 16 19 C 0.08 2.04 5.14 -17.35 -0.09 1.95 16 20 N -0.79 -20.97 10.96 55.55 0.61 -20.36 16 21 Si 0.90 19.19 29.59 -169.99 -5.03 14.16 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.23 -6.05 8.53 -38.67 -0.33 -6.38 16 26 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.74 7.89 -51.93 -0.41 0.33 16 31 H 0.16 1.39 7.95 -52.49 -0.42 0.97 16 32 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.39 7.43 8.24 -40.81 -0.34 7.09 16 35 H 0.08 1.73 6.07 -52.49 -0.32 1.41 16 36 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 39 H 0.12 3.19 6.16 -52.49 -0.32 2.86 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -30.77 328.42 -9.02 -39.80 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.05 Total: 12.60 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -4.07 Total: -24.94 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.18 Total: -46.57 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.77 -9.02 -39.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602680025.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.501 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds