Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30908 * 120.41920 * 2 1 4 4 C 1.34495 * 121.94215 * 180.28118 * 3 2 1 5 5 N 1.31072 * 118.92916 * 179.69742 * 4 3 2 6 6 C 1.46503 * 119.99924 * 354.79798 * 5 4 3 7 7 C 1.53001 * 109.47065 * 117.42338 * 6 5 4 8 8 C 1.50704 * 115.54958 * 279.45631 * 7 6 5 9 9 H 1.07991 * 120.00256 * 114.88655 * 8 7 6 10 10 C 1.37881 * 119.99973 * 294.89235 * 8 7 6 11 11 N 1.31515 * 119.99724 * 353.64656 * 10 8 7 12 12 Si 1.86795 * 120.00117 * 173.64999 * 10 8 7 13 13 H 1.48506 * 109.47117 * 59.99836 * 12 10 8 14 14 H 1.48502 * 109.47113 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47238 * 300.00036 * 12 10 8 16 16 C 1.52995 * 117.49990 * 133.75125 * 7 6 5 17 17 C 1.52999 * 117.50236 * 65.12532 * 7 6 5 18 18 N 1.37528 * 122.14422 * 359.42354 * 4 3 2 19 19 H 0.96999 * 120.16881 * 180.29838 * 18 4 3 20 20 C 1.38243 * 119.66950 * 0.27520 * 18 4 3 21 21 C 1.38737 * 121.80117 * 179.97438 * 20 18 4 22 22 C 1.37994 * 119.59431 * 180.02562 * 21 20 18 23 23 C 1.38788 * 120.67589 * 0.04053 * 22 21 20 24 24 C 1.36712 * 120.67956 * 359.95897 * 23 22 21 25 25 C 1.39738 * 119.62104 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47414 * 270.27905 * 1 2 3 27 27 H 1.09003 * 109.47267 * 30.28631 * 1 2 3 28 28 H 1.09001 * 109.46689 * 150.28028 * 1 2 3 29 29 H 1.08994 * 109.46769 * 237.42060 * 6 5 4 30 30 H 1.09000 * 109.46827 * 357.42573 * 6 5 4 31 31 H 0.96997 * 119.99692 * 185.04569 * 11 10 8 32 32 H 1.08999 * 117.49842 * 359.97438 * 16 7 6 33 33 H 1.08996 * 117.50291 * 145.02170 * 16 7 6 34 34 H 1.08996 * 117.49785 * 214.98311 * 17 7 6 35 35 H 1.09009 * 117.49417 * 359.97438 * 17 7 6 36 36 H 1.08006 * 120.19904 * 0.02562 * 21 20 18 37 37 H 1.08006 * 119.66552 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.66014 * 179.97438 * 23 22 21 39 39 H 1.08002 * 120.18883 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1698 1.1289 0.0000 4 6 3.5143 1.1646 -0.0056 5 7 4.1176 2.3282 -0.0113 6 6 3.3325 3.5598 -0.1266 7 6 3.5200 4.4041 1.1355 8 6 2.6881 3.9921 2.3227 9 1 3.1682 3.6177 3.2146 10 6 1.3140 4.0931 2.2700 11 7 0.7359 4.6638 1.2357 12 14 0.2737 3.4195 3.6675 13 1 0.6360 4.1097 4.9315 14 1 -1.1629 3.6515 3.3716 15 1 0.5210 1.9622 3.8109 16 6 3.7987 5.8972 0.9517 17 6 4.9180 4.9610 1.4118 18 7 4.2767 0.0201 0.0000 19 1 5.2449 0.0793 0.0001 20 6 3.6564 -1.2154 0.0061 21 6 4.3821 -2.3978 0.0114 22 6 3.7158 -3.6063 0.0168 23 6 2.3286 -3.6500 0.0161 24 6 1.5944 -2.4969 0.0109 25 6 2.2481 -1.2618 0.0057 26 1 -0.3634 0.0050 1.0276 27 1 -0.3634 0.8874 -0.5183 28 1 -0.3633 -0.8925 -0.5095 29 1 3.6693 4.1253 -0.9954 30 1 2.2781 3.3090 -0.2426 31 1 -0.2244 4.8009 1.2315 32 1 3.8489 6.2779 -0.0684 33 1 3.3803 6.5819 1.6894 34 1 5.2359 5.0297 2.4521 35 1 5.7044 4.7255 0.6945 36 1 5.4618 -2.3726 0.0113 37 1 4.2796 -4.5275 0.0213 38 1 1.8241 -4.6049 0.0200 39 1 0.5152 -2.5402 0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603371886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = 87.637660 kcal Electronic energy + Delta-G solvation = -21908.977726 eV Core-core repulsion = 18816.993780 eV Total energy + Delta-G solvation = -3091.983947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.89991 -39.01641 -38.16924 -36.37904 -34.72776 -34.01452 -31.85140 -30.75425 -29.84654 -27.81669 -26.80525 -24.58502 -23.21050 -23.00112 -22.71428 -20.94530 -19.44142 -19.12348 -18.12947 -17.81942 -16.65754 -16.25225 -16.11965 -15.92217 -15.68740 -15.24877 -14.94442 -14.91739 -14.23456 -14.13341 -13.83831 -13.28792 -13.19989 -13.13611 -12.98027 -12.89639 -12.80773 -12.41043 -12.10906 -12.06685 -11.93893 -11.52299 -10.92558 -10.85316 -10.55621 -10.36502 -10.30907 -9.70672 -9.64223 -8.40597 -8.03992 -6.13394 -0.43277 0.36140 0.81511 1.33705 1.35343 1.43259 1.83742 2.34810 2.42341 3.04490 3.20096 3.25278 3.38973 3.53438 3.67430 4.10463 4.24136 4.36548 4.39374 4.43474 4.44764 4.60305 4.68145 4.69558 4.75717 4.79319 4.94597 5.00298 5.01530 5.14572 5.23156 5.24230 5.37911 5.41828 5.56162 5.57629 5.63851 5.69582 5.97177 6.00481 6.25354 6.46275 6.85475 7.13270 7.33234 7.50464 9.03902 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.006020 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.098725 B = 4650.015881 C = 5606.064133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.251 3.749 3 N -0.547 5.547 4 C 0.503 3.497 5 N -0.591 5.591 6 C 0.120 3.880 7 C 0.037 3.963 8 C -0.506 4.506 9 H 0.028 0.972 10 C 0.045 3.955 11 N -0.894 5.894 12 Si 0.937 3.063 13 H -0.278 1.278 14 H -0.270 1.270 15 H -0.279 1.279 16 C -0.175 4.175 17 C -0.183 4.183 18 N -0.641 5.641 19 H 0.423 0.577 20 C 0.194 3.806 21 C -0.184 4.184 22 C -0.040 4.040 23 C -0.162 4.162 24 C -0.034 4.034 25 C -0.215 4.215 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.166 -21.807 -4.564 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.071 3.929 3 N -0.264 5.264 4 C 0.136 3.864 5 N -0.319 5.319 6 C -0.011 4.011 7 C 0.036 3.964 8 C -0.543 4.543 9 H 0.047 0.953 10 C -0.156 4.156 11 N -0.530 5.530 12 Si 0.763 3.237 13 H -0.203 1.203 14 H -0.195 1.195 15 H -0.205 1.205 16 C -0.213 4.213 17 C -0.220 4.220 18 N -0.267 5.267 19 H 0.261 0.739 20 C 0.088 3.912 21 C -0.206 4.206 22 C -0.060 4.060 23 C -0.182 4.182 24 C -0.054 4.054 25 C -0.222 4.222 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.182 0.818 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.635 -20.212 -4.645 20.749 hybrid contribution -0.230 -0.017 0.823 0.855 sum 0.405 -20.230 -3.822 20.591 Atomic orbital electron populations 1.21000 0.85741 1.05461 1.04523 1.24143 0.98384 0.87217 0.83179 1.69200 1.06611 1.30187 1.20380 1.20062 0.84064 0.88178 0.94112 1.72296 1.36189 0.97285 1.26119 1.21058 0.97180 0.88381 0.94467 1.18899 0.92657 0.90571 0.94260 1.20402 0.91392 1.44177 0.98365 0.95327 1.25404 0.98186 0.94638 0.97408 1.70044 1.10403 1.42323 1.30272 0.85967 0.78658 0.78897 0.80188 1.20339 1.19501 1.20489 1.22659 1.03857 0.95629 0.99154 1.22686 0.92722 1.07154 0.99473 1.42092 1.10296 1.02281 1.72008 0.73884 1.18526 0.92181 0.85640 0.94856 1.20896 1.00942 0.89899 1.08885 1.21641 0.95058 0.97489 0.91819 1.21249 0.94088 0.99288 1.03539 1.21265 1.01779 0.89416 0.92939 1.19562 0.91687 0.95678 1.15232 0.88971 0.91041 0.85458 0.95288 0.91895 0.93034 0.91038 0.91643 0.91290 0.90227 0.83282 0.81552 0.81784 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 9.82 71.24 0.70 -2.14 16 2 C 0.25 8.62 7.05 44.80 0.32 8.93 16 3 N -0.55 -24.90 8.51 -180.83 -1.54 -26.44 16 4 C 0.50 22.88 8.38 261.64 2.19 25.07 16 5 N -0.59 -30.08 10.59 -351.33 -3.72 -33.81 16 6 C 0.12 6.66 6.10 86.38 0.53 7.19 16 7 C 0.04 2.11 1.50 -52.93 -0.08 2.03 16 8 C -0.51 -30.84 8.83 25.60 0.23 -30.61 16 9 H 0.03 1.80 7.82 -2.92 -0.02 1.78 16 10 C 0.05 2.65 5.27 84.66 0.45 3.09 16 11 N -0.89 -53.42 12.45 21.45 0.27 -53.15 16 12 Si 0.94 45.91 29.55 68.60 2.03 47.93 16 13 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 15 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 16 C -0.17 -9.21 9.88 30.59 0.30 -8.91 16 17 C -0.18 -9.31 9.91 30.59 0.30 -9.01 16 18 N -0.64 -22.35 5.49 -190.80 -1.05 -23.40 16 19 H 0.42 12.95 8.85 -92.71 -0.82 12.13 16 20 C 0.19 5.48 6.67 38.91 0.26 5.74 16 21 C -0.18 -3.50 9.97 22.33 0.22 -3.27 16 22 C -0.04 -0.52 10.02 22.34 0.22 -0.29 16 23 C -0.16 -1.99 9.97 22.04 0.22 -1.77 16 24 C -0.03 -0.58 9.37 22.28 0.21 -0.37 16 25 C -0.21 -5.88 5.87 -20.15 -0.12 -6.00 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.13 1.92 6.62 -2.39 -0.02 1.90 16 29 H 0.03 1.59 7.94 -2.39 -0.02 1.57 16 30 H 0.06 3.77 5.65 -2.39 -0.01 3.76 16 31 H 0.26 14.74 8.32 -92.71 -0.77 13.97 16 32 H 0.07 3.54 8.08 -2.39 -0.02 3.52 16 33 H 0.06 3.54 8.14 -2.39 -0.02 3.52 16 34 H 0.07 3.44 8.14 -2.39 -0.02 3.43 16 35 H 0.08 3.80 8.14 -2.38 -0.02 3.78 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 38 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 39 H 0.16 1.74 6.56 -2.91 -0.02 1.72 16 Total: -1.00 -79.36 331.25 2.19 -77.17 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.25 Total: 22.00 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.95 Total: -10.31 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -6.04 Total: -136.79 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.36 2.19 -77.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603371886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.809 kcal (2) G-P(sol) polarization free energy of solvation -79.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds