Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47095 * 2 1 4 4 N 1.46898 * 109.47153 * 120.00484 * 2 1 3 5 5 C 1.46901 * 111.00159 * 274.99762 * 4 2 1 6 6 C 1.52990 * 109.47309 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47693 * 54.99764 * 6 5 4 8 8 C 1.47205 * 109.47285 * 294.99768 * 6 5 4 9 9 N 4.90933 * 82.27860 * 119.14008 * 2 1 3 10 10 C 1.53001 * 109.47484 * 175.00050 * 6 5 4 11 11 C 1.50696 * 109.47523 * 184.99767 * 10 6 5 12 12 H 1.08006 * 119.99687 * 0.02562 * 11 10 6 13 13 C 1.37882 * 120.00155 * 179.97438 * 11 10 6 14 14 N 1.31514 * 119.99633 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99831 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47181 * 60.00437 * 15 13 11 17 17 H 1.48502 * 109.46775 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47670 * 300.00187 * 15 13 11 19 19 C 1.50702 * 109.47085 * 240.00576 * 2 1 3 20 20 C 1.38382 * 119.91983 * 279.98037 * 19 2 1 21 21 C 1.38347 * 120.30536 * 180.02562 * 20 19 2 22 22 C 1.37971 * 120.14496 * 359.97438 * 21 20 19 23 23 C 1.39610 * 119.84901 * 359.76286 * 22 21 20 24 24 C 1.43200 * 120.15093 * 180.25306 * 23 22 21 25 25 N 5.95826 * 111.37402 * 277.31640 * 2 1 3 26 26 C 1.37925 * 119.92601 * 99.99831 * 19 2 1 27 27 H 1.08995 * 109.47248 * 59.99027 * 1 2 3 28 28 H 1.08996 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46824 * 299.99531 * 1 2 3 30 30 H 1.00904 * 111.00048 * 38.95080 * 4 2 1 31 31 H 1.09001 * 109.46816 * 300.00377 * 5 4 2 32 32 H 1.08999 * 109.47169 * 59.99717 * 5 4 2 33 33 H 1.09004 * 109.46905 * 305.00148 * 10 6 5 34 34 H 1.09001 * 109.46751 * 64.99750 * 10 6 5 35 35 H 0.96997 * 119.99123 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.85139 * 0.04081 * 20 19 2 37 37 H 1.07993 * 119.92925 * 179.97438 * 21 20 19 38 38 H 1.08002 * 120.07199 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.07400 * 359.97438 * 26 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2224 2.3469 6 6 2.5963 -0.5331 3.5740 7 1 3.5520 -1.0014 3.3387 8 6 1.6229 -1.5695 3.9553 9 7 0.8704 -2.3689 4.2491 10 6 2.7802 0.4456 4.7356 11 6 3.4012 -0.2737 5.9052 12 1 3.6410 -1.3239 5.8276 13 6 3.6640 0.4091 7.0739 14 7 3.3723 1.6881 7.1680 15 14 4.4330 -0.4828 8.5239 16 1 5.7539 -1.0309 8.1239 17 1 4.6116 0.4673 9.6511 18 1 3.5444 -1.5938 8.9496 19 6 2.0323 -0.7103 -1.2306 20 6 2.0664 -2.0933 -1.2637 21 6 2.5265 -2.7536 -2.3890 22 6 2.9544 -2.0359 -3.4869 23 6 2.9175 -0.6405 -3.4624 24 6 3.3549 0.1107 -4.6004 25 7 3.7015 0.7066 -5.5033 26 6 2.4574 0.0195 -2.3210 27 1 -0.3633 0.5140 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.4495 -1.4980 1.4099 31 1 2.7589 1.0460 2.1182 32 1 1.0872 0.6162 2.5526 33 1 3.4319 1.2617 4.4233 34 1 1.8104 0.8472 5.0293 35 1 3.5576 2.1684 7.9900 36 1 1.7321 -2.6599 -0.4072 37 1 2.5509 -3.8330 -2.4081 38 1 3.3129 -2.5525 -4.3650 39 1 2.4301 1.0989 -2.2938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610345852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = 63.883100 kcal Electronic energy + Delta-G solvation = -20301.361736 eV Core-core repulsion = 17208.347715 eV Total energy + Delta-G solvation = -3093.014022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02474 -37.83318 -36.71780 -35.75287 -33.89973 -32.53059 -31.56040 -30.78259 -29.00153 -26.34486 -24.43222 -23.86503 -22.48926 -21.95915 -21.31578 -18.42934 -16.85979 -16.67124 -16.49043 -15.94654 -15.52412 -14.83553 -14.61275 -14.36359 -14.24635 -13.92491 -13.48609 -13.36821 -13.12601 -13.00515 -12.91893 -12.78063 -12.29920 -12.23810 -12.12285 -11.82008 -11.75548 -11.50290 -11.29077 -11.08207 -11.03753 -10.76984 -10.57886 -10.31039 -9.60222 -9.29397 -9.23517 -9.03994 -8.48617 -8.44423 -6.12392 -4.15698 0.53823 1.03663 2.40130 2.70787 3.29365 3.33844 3.37102 3.50061 3.54294 3.58051 3.61383 4.11911 4.39003 4.48140 4.57069 4.73785 4.77867 4.88454 5.00322 5.07351 5.18690 5.25750 5.37323 5.45602 5.51356 5.59317 5.64590 5.72294 5.91151 5.99674 6.08584 6.09976 6.18110 6.35309 6.49582 6.53951 6.98089 7.21613 7.29156 7.39804 7.48785 7.82302 8.19730 8.34084 8.88604 9.49969 10.98434 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.002931 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.488938 B = 9549.223562 C = 9796.012519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 H 0.094 0.906 4 N -0.684 5.684 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.112 0.888 8 C 0.240 3.760 9 N -0.476 5.476 10 C 0.033 3.967 11 C -0.528 4.528 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.063 4.063 20 C -0.066 4.066 21 C -0.120 4.120 22 C -0.076 4.076 23 C -0.034 4.034 24 C 0.258 3.742 25 N -0.425 5.425 26 C -0.066 4.066 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.340 0.660 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -4.211 -19.114 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.009 3.991 3 H 0.112 0.888 4 N -0.315 5.315 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.076 4.076 9 N -0.153 5.153 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.063 4.063 20 C -0.085 4.085 21 C -0.139 4.139 22 C -0.097 4.097 23 C -0.037 4.037 24 C -0.057 4.057 25 N -0.100 5.100 26 C -0.087 4.087 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.219 -4.247 -20.101 20.795 hybrid contribution -0.306 -0.287 1.454 1.514 sum -3.525 -4.534 -18.646 19.511 Atomic orbital electron populations 1.22509 0.95970 1.02647 1.02802 1.20475 0.92846 0.97766 0.88002 0.88786 1.60683 1.57017 1.09984 1.03774 1.22133 1.00537 0.95234 0.88350 1.19335 0.93943 0.91953 0.96304 0.87053 1.29355 0.93320 0.93285 0.91649 1.81065 1.11922 1.12083 1.10260 1.19156 0.98263 0.93175 0.89980 1.21102 1.41450 0.96163 0.97873 0.92554 1.24950 0.95499 0.94828 0.98660 1.69924 1.47526 1.08080 1.27479 0.86654 0.79934 0.79516 0.81980 1.19989 1.21193 1.20279 1.19733 0.98277 0.93791 0.94538 1.21238 0.95787 0.93979 0.97493 1.21100 0.99409 1.00393 0.92950 1.21134 0.97827 0.91677 0.99021 1.15913 1.05806 0.92088 0.89896 1.25772 0.93455 0.93406 0.93043 1.81256 1.09326 1.08607 1.10791 1.21005 0.96313 1.00164 0.91182 0.91738 0.92196 0.91745 0.84164 0.88849 0.94395 0.94188 0.95765 0.92716 0.85250 0.85013 0.85305 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.14 37.16 0.34 -1.13 16 2 C 0.12 1.04 2.79 -68.86 -0.19 0.85 16 3 H 0.09 0.78 7.66 -51.93 -0.40 0.38 16 4 N -0.68 -7.41 5.70 -107.95 -0.61 -8.02 16 5 C 0.07 0.86 4.92 -3.83 -0.02 0.84 16 6 C 0.01 0.11 2.42 -93.41 -0.23 -0.11 16 7 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 8 C 0.24 4.51 12.98 -20.74 -0.27 4.25 16 9 N -0.48 -9.73 18.54 42.17 0.78 -8.94 16 10 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 11 C -0.53 -13.65 8.60 -34.44 -0.30 -13.95 16 12 H 0.06 1.45 7.59 -52.48 -0.40 1.05 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 15 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.06 -0.52 4.95 -104.68 -0.52 -1.04 16 20 C -0.07 -0.52 9.32 -39.49 -0.37 -0.89 16 21 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 22 C -0.08 -0.53 9.76 -39.17 -0.38 -0.91 16 23 C -0.03 -0.27 5.73 -106.93 -0.61 -0.89 16 24 C 0.26 2.58 15.33 -22.47 -0.34 2.23 16 25 N -0.42 -5.22 18.54 41.84 0.78 -4.45 16 26 C -0.07 -0.52 9.37 -39.17 -0.37 -0.89 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 30 H 0.34 3.78 6.88 -39.29 -0.27 3.51 16 31 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 32 H 0.04 0.49 7.43 -51.93 -0.39 0.10 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.13 0.99 7.23 -52.49 -0.38 0.61 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.87 8.03 -52.49 -0.42 0.45 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -30.09 347.59 -7.13 -37.22 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.15 Total: -2.02 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.87 Total: -10.64 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 1.68 Total: -45.73 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.09 -7.13 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610345852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.106 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds