Wall clock time and date at job start Tue Mar 31 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.38645 * 125.98269 * 60.02124 * 4 2 1 6 6 C 1.32887 * 107.91528 * 180.02562 * 5 4 2 7 7 N 1.38639 * 107.91542 * 359.97438 * 6 5 4 8 8 C 1.46505 * 125.98525 * 180.02562 * 7 6 5 9 9 N 1.46907 * 109.46894 * 259.97898 * 8 7 6 10 10 C 1.46901 * 111.00290 * 66.04132 * 9 8 7 11 11 C 1.46898 * 110.99800 * 190.00198 * 9 8 7 12 12 H 1.09005 * 109.46922 * 299.99514 * 11 9 8 13 13 C 1.52996 * 109.47484 * 59.99489 * 11 9 8 14 14 C 1.50699 * 109.47026 * 179.97438 * 11 9 8 15 15 H 1.08004 * 119.99901 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00165 * 179.97438 * 14 11 9 17 17 N 1.31517 * 120.00258 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 120.00272 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47195 * 89.99789 * 18 16 14 20 20 H 1.48500 * 109.47381 * 210.00201 * 18 16 14 21 21 H 1.48501 * 109.47111 * 330.00142 * 18 16 14 22 22 C 1.34756 * 108.03524 * 359.74078 * 7 6 5 23 23 S 1.71196 * 125.95477 * 180.25917 * 22 7 6 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 29 29 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.08000 * 126.04540 * 359.97438 * 5 4 2 32 32 H 1.08008 * 126.04463 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47096 * 19.97376 * 8 7 6 34 34 H 1.08997 * 109.47722 * 139.97928 * 8 7 6 35 35 H 1.09004 * 109.46773 * 60.00113 * 10 9 8 36 36 H 1.09000 * 109.47048 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47045 * 300.00415 * 10 9 8 38 38 H 1.08997 * 109.47002 * 60.00382 * 13 11 9 39 39 H 1.08999 * 109.47071 * 179.97438 * 13 11 9 40 40 H 1.08998 * 109.46914 * 300.00023 * 13 11 9 41 41 H 0.96994 * 120.00493 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7614 -0.3263 -2.5091 6 6 2.3762 -1.1970 -3.3027 7 7 3.0283 -2.1197 -2.4993 8 6 3.8298 -3.2535 -2.9666 9 7 3.0282 -4.4825 -2.8945 10 6 1.9052 -4.4349 -3.8403 11 6 3.8622 -5.6693 -3.1267 12 1 4.3169 -5.6061 -4.1154 13 6 4.9606 -5.7368 -2.0637 14 6 3.0075 -6.9078 -3.0446 15 1 1.9505 -6.8218 -2.8399 16 6 3.5748 -8.1505 -3.2307 17 7 4.8618 -8.2552 -3.4805 18 14 2.5155 -9.6857 -3.1283 19 1 1.9755 -10.0052 -4.4742 20 1 3.3375 -10.8229 -2.6420 21 1 1.3913 -9.4495 -2.1872 22 6 2.8011 -1.7874 -1.2133 23 16 3.3982 -2.6172 0.1599 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.1660 0.5156 -2.8301 32 1 2.3692 -1.1875 -4.3827 33 1 4.1375 -3.0805 -3.9978 34 1 4.7131 -3.3584 -2.3366 35 1 2.2890 -4.3270 -4.8548 36 1 1.3287 -5.3570 -3.7665 37 1 1.2651 -3.5856 -3.6017 38 1 4.5059 -5.8001 -1.0751 39 1 5.5791 -6.6177 -2.2358 40 1 5.5788 -4.8411 -2.1227 41 1 5.2610 -9.1295 -3.6110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728902239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:37 Heat of formation + Delta-G solvation = 79.488714 kcal Electronic energy + Delta-G solvation = -20891.430383 eV Core-core repulsion = 17934.537023 eV Total energy + Delta-G solvation = -2956.893360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.38565 -37.63424 -36.09060 -33.12409 -31.84280 -30.40549 -29.11753 -27.59479 -27.09993 -24.78139 -23.94543 -22.90715 -21.88963 -20.78213 -19.65678 -17.89730 -16.40466 -16.15823 -15.69357 -15.52760 -14.99390 -14.79734 -14.46511 -14.16228 -13.91320 -13.61466 -13.20660 -12.82543 -12.63682 -12.52023 -12.44607 -11.94644 -11.77923 -11.35245 -11.29262 -11.00211 -10.79495 -10.75104 -10.70237 -10.21305 -10.10379 -9.96229 -9.89271 -9.67483 -8.89978 -8.41978 -7.40275 -7.01469 -6.83093 -6.00752 -4.05188 1.72446 1.94487 2.03672 2.88794 3.04155 3.31843 3.39281 3.44540 4.33413 4.41527 4.66033 4.72683 4.76031 4.90039 5.01588 5.09279 5.11349 5.18358 5.31890 5.37766 5.40153 5.55583 5.67102 5.78994 5.86658 5.96246 6.03568 6.17524 6.48860 6.62426 6.82664 6.89684 7.04471 7.09358 7.15042 7.50282 7.66694 7.83198 8.16447 8.28947 8.49878 8.98752 9.59278 11.05937 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.004349 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.985775 B = 6437.094767 C = 6506.215058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.464 5.464 5 C -0.019 4.019 6 C -0.005 4.005 7 N -0.450 5.450 8 C 0.279 3.721 9 N -0.534 5.534 10 C 0.034 3.966 11 C 0.223 3.777 12 H 0.000 1.000 13 C -0.132 4.132 14 C -0.502 4.502 15 H 0.063 0.937 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.473 3.527 23 S -0.624 6.624 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.186 0.814 32 H 0.187 0.813 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.012 0.988 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 20.390 -0.799 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.216 4.216 4 N -0.156 5.156 5 C -0.148 4.148 6 C -0.135 4.135 7 N -0.140 5.140 8 C 0.068 3.932 9 N -0.259 5.259 10 C -0.114 4.114 11 C 0.118 3.882 12 H 0.018 0.982 13 C -0.190 4.190 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.117 3.883 23 S -0.492 6.492 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.203 0.797 32 H 0.204 0.796 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.031 0.969 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.880 19.579 0.573 20.760 hybrid contribution -0.632 -0.322 -1.717 1.858 sum -7.512 19.257 -1.144 20.702 Atomic orbital electron populations 1.22139 0.93202 1.03496 1.02888 1.21575 0.95065 0.93339 0.86895 1.22139 1.02387 0.94162 1.02957 1.45620 1.40099 1.22893 1.06978 1.22053 1.06772 1.03599 0.82361 1.22327 1.00335 0.92242 0.98642 1.45856 1.40483 1.23469 1.04156 1.22503 0.91680 0.80708 0.98261 1.61989 1.11232 1.01311 1.51413 1.22282 0.94653 1.02034 0.92428 1.19243 0.90493 0.84880 0.93607 0.98230 1.21845 0.98166 0.99547 0.99456 1.21061 0.95053 0.89791 1.48148 0.91850 1.24896 0.95040 0.98962 0.95142 1.69887 1.10332 1.24070 1.48808 0.86499 0.80345 0.82503 0.78101 1.20875 1.21173 1.19791 1.22959 0.88416 0.86442 0.90516 1.93292 1.69079 1.63499 1.23372 0.90293 0.91428 0.92099 0.85673 0.90287 0.91626 0.92086 0.79708 0.79604 0.92381 0.86263 0.96934 0.89769 0.94319 0.93489 0.89670 0.97465 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.25 37.16 0.34 -0.93 16 2 C 0.13 1.35 3.52 -67.93 -0.24 1.11 16 3 C -0.16 -1.16 9.25 37.16 0.34 -0.81 16 4 N -0.46 -5.86 2.63 -110.87 -0.29 -6.15 16 5 C -0.02 -0.18 10.50 -16.31 -0.17 -0.35 16 6 C -0.01 -0.06 10.50 -16.32 -0.17 -0.23 16 7 N -0.45 -7.11 2.52 -121.26 -0.31 -7.42 16 8 C 0.28 5.07 5.30 -63.30 -0.34 4.73 16 9 N -0.53 -11.52 4.76 -240.19 -1.14 -12.67 16 10 C 0.03 0.66 9.11 60.07 0.55 1.21 16 11 C 0.22 5.60 2.06 -68.87 -0.14 5.46 16 12 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 13 C -0.13 -3.36 8.76 37.16 0.33 -3.04 16 14 C -0.50 -13.79 7.88 -34.44 -0.27 -14.06 16 15 H 0.06 1.76 6.41 -52.48 -0.34 1.42 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 17 N -0.89 -25.41 11.32 55.43 0.63 -24.79 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.47 8.19 7.79 -86.95 -0.68 7.51 16 23 S -0.62 -13.75 29.38 -107.50 -3.16 -16.90 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.40 7.94 -51.93 -0.41 -0.02 16 27 H 0.13 1.58 7.06 -51.93 -0.37 1.22 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.19 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 33 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.12 2.41 5.64 -51.93 -0.29 2.11 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 1.77 6.10 -51.93 -0.32 1.45 16 37 H 0.04 0.66 6.90 -51.93 -0.36 0.30 16 38 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 2.34 6.07 -51.93 -0.32 2.02 16 40 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -33.93 340.46 -11.20 -45.13 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.49 Total: -1.08 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.54 Total: 2.20 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -1.11 Total: -51.03 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -13.75 SS G_CDS: -3.16 Total: -16.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.93 -11.20 -45.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728902239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.618 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds