Wall clock time and date at job start Tue Mar 31 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50704 * 109.46770 * 119.99097 * 2 1 3 5 5 N 1.29644 * 120.00546 * 240.00431 * 4 2 1 6 6 N 1.28993 * 120.00329 * 180.02562 * 5 4 2 7 7 C 1.32711 * 119.99779 * 179.97438 * 6 5 4 8 8 C 1.42016 * 121.09609 * 359.97438 * 7 6 5 9 9 C 1.34568 * 120.08196 * 179.74259 * 8 7 6 10 10 N 1.36107 * 122.50428 * 0.28010 * 9 8 7 11 11 H 0.97004 * 119.19175 * 179.97438 * 10 9 8 12 12 C 1.38046 * 121.61899 * 359.95460 * 10 9 8 13 13 C 1.39045 * 121.06635 * 180.02562 * 12 10 9 14 14 C 1.37868 * 119.85439 * 179.97438 * 13 12 10 15 15 C 1.38731 * 120.67519 * 0.02562 * 14 13 12 16 16 C 1.37817 * 120.35705 * 0.02562 * 15 14 13 17 17 C 1.39347 * 119.57352 * 359.95644 * 16 15 14 18 18 C 1.52991 * 109.47390 * 239.99479 * 2 1 3 19 19 C 1.50700 * 109.47504 * 65.00198 * 18 2 1 20 20 H 1.08003 * 119.99437 * 359.97438 * 19 18 2 21 21 C 1.37869 * 120.00338 * 180.02562 * 19 18 2 22 22 N 1.31513 * 120.00187 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00010 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47074 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47100 * 120.00088 * 23 21 19 26 26 H 1.48500 * 109.47057 * 239.99613 * 23 21 19 27 27 H 1.08996 * 109.47265 * 300.00646 * 1 2 3 28 28 H 1.09003 * 109.46572 * 60.00509 * 1 2 3 29 29 H 1.09000 * 109.46837 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99488 * 60.00659 * 4 2 1 31 31 H 1.08002 * 119.96150 * 0.02650 * 8 7 6 32 32 H 1.08005 * 118.74660 * 180.25186 * 9 8 7 33 33 H 1.08000 * 120.07688 * 359.94865 * 13 12 10 34 34 H 1.08005 * 119.66493 * 179.97438 * 14 13 12 35 35 H 1.08002 * 119.81704 * 179.97438 * 15 14 13 36 36 H 1.08007 * 120.20857 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.47401 * 185.00401 * 18 2 1 38 38 H 1.09004 * 109.47130 * 305.00140 * 18 2 1 39 39 H 0.97003 * 120.00707 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 7 2.7775 -0.0802 2.0841 6 7 3.2078 -0.6883 3.1371 7 6 3.9711 -0.0433 4.0104 8 6 4.3288 1.3161 3.8084 9 6 5.0997 1.9519 4.7098 10 7 5.5700 1.3401 5.8310 11 1 6.1225 1.8442 6.4487 12 6 5.2796 0.0198 6.1110 13 6 5.7658 -0.5936 7.2602 14 6 5.4599 -1.9135 7.5154 15 6 4.6703 -2.6398 6.6359 16 6 4.1796 -2.0503 5.4909 17 6 4.4807 -0.7169 5.2206 18 6 2.0401 -0.7213 -1.2491 19 6 1.6415 0.0568 -2.4766 20 1 1.0801 0.9740 -2.3758 21 6 1.9926 -0.4025 -3.7282 22 7 2.6757 -1.5196 -3.8509 23 14 1.4991 0.5624 -5.2496 24 1 0.7427 1.7740 -4.8436 25 1 2.7175 0.9661 -5.9965 26 1 0.6445 -0.2861 -6.1184 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7714 -1.7442 1.4015 31 1 3.9780 1.8418 2.9326 32 1 5.3552 2.9869 4.5368 33 1 6.3821 -0.0376 7.9512 34 1 5.8395 -2.3871 8.4088 35 1 4.4396 -3.6731 6.8493 36 1 3.5655 -2.6182 4.8076 37 1 3.1264 -0.7996 -1.2054 38 1 1.6054 -1.7199 -1.2949 39 1 2.9231 -1.8427 -4.7315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766021004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:53 Heat of formation + Delta-G solvation = 82.975467 kcal Electronic energy + Delta-G solvation = -20360.766316 eV Core-core repulsion = 17268.580202 eV Total energy + Delta-G solvation = -3092.186115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76226 -37.84696 -37.12842 -35.40152 -33.40309 -32.02269 -30.89205 -30.24479 -28.68811 -26.87054 -24.64728 -23.61309 -23.39239 -22.35441 -20.49806 -18.83723 -18.31323 -18.12532 -17.39847 -16.36897 -16.09591 -14.86475 -14.73005 -14.47175 -14.37910 -14.16422 -13.90578 -13.31232 -13.16100 -13.06498 -12.86430 -12.27766 -12.13612 -11.95301 -11.64097 -11.36007 -11.19255 -11.02054 -10.86419 -10.48669 -10.38170 -10.17382 -9.78726 -9.34649 -9.21081 -9.00955 -8.59445 -8.31472 -7.88886 -6.86600 -5.95517 -3.97353 0.49336 0.99798 1.53716 2.61319 2.84951 3.34520 3.41968 3.45802 3.51613 4.10767 4.26195 4.43725 4.50191 4.71450 4.82120 4.95652 5.06283 5.13688 5.24716 5.40379 5.59487 5.70955 5.79644 5.87257 5.96051 6.08575 6.18509 6.24399 6.27652 6.31469 6.57998 6.62336 6.71372 6.92070 6.96149 7.06716 7.08953 7.14900 7.71128 7.77308 7.91936 8.03625 8.44730 9.08353 9.30895 9.65856 11.15901 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.028808 B = 0.002880 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.720834 B = 9719.370441 C =10026.398505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.053 4.053 3 H 0.075 0.925 4 C 0.180 3.820 5 N -0.391 5.391 6 N -0.396 5.396 7 C 0.234 3.766 8 C -0.235 4.235 9 C 0.127 3.873 10 N -0.630 5.630 11 H 0.413 0.587 12 C 0.188 3.812 13 C -0.180 4.180 14 C -0.069 4.069 15 C -0.163 4.163 16 C -0.037 4.037 17 C -0.092 4.092 18 C 0.034 3.966 19 C -0.512 4.512 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.017 0.983 38 H 0.021 0.979 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 3.529 24.634 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 H 0.094 0.906 4 C -0.019 4.019 5 N -0.204 5.204 6 N -0.215 5.215 7 C 0.066 3.934 8 C -0.262 4.262 9 C 0.000 4.000 10 N -0.241 5.241 11 H 0.248 0.752 12 C 0.085 3.915 13 C -0.201 4.201 14 C -0.089 4.089 15 C -0.183 4.183 16 C -0.057 4.057 17 C -0.098 4.098 18 C -0.004 4.004 19 C -0.551 4.551 20 H 0.078 0.922 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.382 3.384 24.413 25.459 hybrid contribution 0.107 0.612 -0.748 0.972 sum 6.489 3.995 23.665 24.862 Atomic orbital electron populations 1.21646 0.94597 1.01369 1.00804 1.20476 0.95351 1.00068 0.91454 0.90640 1.26686 0.87499 0.96160 0.91595 1.69768 1.13040 1.35954 1.01660 1.71089 1.14511 1.33130 1.02768 1.20204 0.91712 0.90166 0.91281 1.21323 1.05885 0.96403 1.02624 1.21392 0.94778 0.97695 0.86161 1.41222 1.50235 1.09645 1.23002 0.75211 1.17802 0.95387 0.83958 0.94376 1.20503 1.06006 0.96401 0.97229 1.21006 0.95961 0.93195 0.98691 1.21091 1.01047 1.00615 0.95521 1.21187 0.95840 0.92804 0.95907 1.18267 1.02241 0.94688 0.94591 1.19109 0.96428 0.95587 0.89296 1.21223 1.34808 1.08372 0.90677 0.92249 1.25017 0.95290 0.95093 0.99115 1.69981 1.38942 1.21215 1.23346 0.86546 0.78227 0.80101 0.83195 1.19690 1.21124 1.21086 0.94781 0.90990 0.93173 0.89486 0.83178 0.82686 0.85419 0.85548 0.85546 0.84315 0.96460 0.96089 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.99 37.16 0.33 -2.07 16 2 C -0.05 -1.14 2.75 -91.77 -0.25 -1.40 16 3 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 4 C 0.18 3.76 9.72 -13.20 -0.13 3.63 16 5 N -0.39 -8.24 9.72 32.94 0.32 -7.92 16 6 N -0.40 -7.86 10.33 33.64 0.35 -7.51 16 7 C 0.23 3.95 6.90 -82.23 -0.57 3.38 16 8 C -0.23 -3.39 9.41 -39.43 -0.37 -3.76 16 9 C 0.13 1.22 11.07 -16.95 -0.19 1.03 16 10 N -0.63 -5.16 5.34 -10.73 -0.06 -5.22 16 11 H 0.41 1.75 8.79 -40.82 -0.36 1.39 16 12 C 0.19 1.99 6.66 -83.92 -0.56 1.43 16 13 C -0.18 -1.45 9.91 -39.42 -0.39 -1.85 16 14 C -0.07 -0.55 10.01 -39.53 -0.40 -0.95 16 15 C -0.16 -1.57 10.03 -39.55 -0.40 -1.97 16 16 C -0.04 -0.47 9.65 -39.32 -0.38 -0.85 16 17 C -0.09 -1.28 5.89 -104.83 -0.62 -1.90 16 18 C 0.03 0.89 4.43 -27.89 -0.12 0.76 16 19 C -0.51 -14.35 8.41 -34.44 -0.29 -14.64 16 20 H 0.06 1.60 7.06 -52.48 -0.37 1.23 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 23 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.15 2.36 7.43 -52.49 -0.39 1.97 16 32 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 1.86 7.71 -52.48 -0.40 1.46 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -34.63 336.02 -8.28 -42.91 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.25 Total: 0.02 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.42 Total: -17.64 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 1.35 Total: -47.06 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.63 -8.28 -42.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766021004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.889 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds