Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.46927 * 15.00449 * 8 6 5 10 10 F 1.39903 * 109.47145 * 255.00011 * 8 6 5 11 11 C 1.52998 * 109.46851 * 135.00241 * 8 6 5 12 12 C 1.53001 * 109.47162 * 65.00028 * 11 8 6 13 13 C 1.52995 * 109.47080 * 184.99801 * 11 8 6 14 14 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 15 15 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 16 16 C 1.46500 * 125.97897 * 359.96594 * 15 2 1 17 17 C 1.50698 * 109.46965 * 89.99833 * 16 15 2 18 18 H 1.08000 * 120.00464 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99358 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47006 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46890 * 120.00230 * 21 19 17 24 24 H 1.48501 * 109.46779 * 239.99778 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 28 28 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 29 29 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 30 30 H 1.09004 * 109.47181 * 305.00002 * 11 8 6 31 31 H 1.08994 * 109.47455 * 60.00312 * 12 11 8 32 32 H 1.09003 * 109.47019 * 179.97438 * 12 11 8 33 33 H 1.08998 * 109.47209 * 299.99708 * 12 11 8 34 34 H 1.09004 * 109.47056 * 60.00453 * 13 11 8 35 35 H 1.09003 * 109.47407 * 180.02562 * 13 11 8 36 36 H 1.08996 * 109.47602 * 300.00120 * 13 11 8 37 37 H 1.08994 * 109.46840 * 210.00162 * 16 15 2 38 38 H 1.09004 * 109.46443 * 329.99889 * 16 15 2 39 39 H 0.96998 * 120.00265 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 1 6.7342 3.1070 -0.2482 10 9 6.0367 4.2400 1.2984 11 6 5.6753 4.8291 -0.9924 12 6 4.5229 5.7313 -0.5466 13 6 6.9629 5.6511 -1.0775 14 7 3.6337 -0.6577 -0.0036 15 7 2.3016 -1.0910 -0.0059 16 6 1.8500 -2.4847 -0.0128 17 6 1.6945 -2.9553 -1.4359 18 1 1.9108 -2.2836 -2.2535 19 6 1.2760 -4.2434 -1.6941 20 7 1.0121 -5.0611 -0.6985 21 14 1.0838 -4.8270 -3.4582 22 1 1.4410 -3.7241 -4.3861 23 1 1.9823 -5.9849 -3.6971 24 1 -0.3242 -5.2362 -3.6935 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9719 2.1210 -0.0006 29 1 5.6584 1.0776 0.0055 30 1 5.4484 4.4068 -1.9713 31 1 4.7497 6.1537 0.4323 32 1 4.3926 6.5377 -1.2684 33 1 3.6055 5.1458 -0.4859 34 1 7.7840 5.0083 -1.3952 35 1 6.8322 6.4575 -1.7992 36 1 7.1899 6.0734 -0.0987 37 1 2.5849 -3.1072 0.4976 38 1 0.8916 -2.5584 0.5012 39 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784147607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -17.426584 kcal Electronic energy + Delta-G solvation = -22144.193812 eV Core-core repulsion = 18616.884713 eV Total energy + Delta-G solvation = -3527.309099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.11761 -40.81635 -39.42734 -35.68947 -34.89391 -33.44808 -31.57281 -30.94298 -28.39733 -27.31673 -26.54007 -26.34266 -23.23943 -21.97043 -20.51682 -19.95791 -19.33767 -17.38266 -17.04174 -16.72869 -16.14275 -15.99220 -15.32067 -14.93296 -14.75806 -14.33821 -13.95963 -13.89432 -13.44470 -13.09586 -13.07647 -12.52386 -12.43537 -12.29597 -12.21713 -12.17505 -11.72426 -11.46479 -11.35670 -11.17346 -11.10730 -10.95704 -10.88179 -10.50514 -10.28481 -9.94617 -9.57784 -9.42531 -8.68499 -8.01944 -7.54632 -6.29307 -4.37180 2.04784 2.53791 2.80627 3.17742 3.25844 3.31445 3.60708 3.68040 4.09574 4.25862 4.29988 4.39710 4.54121 4.95138 5.04487 5.09032 5.26789 5.36313 5.46709 5.62454 5.64584 5.76361 5.81403 5.87412 6.03587 6.05883 6.11454 6.33732 6.41410 6.53728 6.63364 6.88232 7.00588 7.33266 7.51222 7.63390 7.84508 7.98523 8.04509 8.57191 8.70842 9.29517 10.78072 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.003440 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.982106 B = 8137.380535 C = 8348.519706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.258 3.742 5 N -0.622 5.622 6 C 0.497 3.503 7 O -0.491 6.491 8 C 0.093 3.907 9 H 0.102 0.898 10 F -0.186 7.186 11 C -0.110 4.110 12 C -0.166 4.166 13 C -0.149 4.149 14 N -0.317 5.317 15 N -0.314 5.314 16 C 0.257 3.743 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.066 3.934 20 N -0.891 5.891 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.412 0.588 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 17.177 0.431 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.320 4.320 4 C 0.006 3.994 5 N -0.270 5.270 6 C 0.280 3.720 7 O -0.363 6.363 8 C 0.053 3.947 9 H 0.119 0.881 10 F -0.167 7.167 11 C -0.129 4.129 12 C -0.223 4.223 13 C -0.206 4.206 14 N -0.148 5.148 15 N -0.097 5.097 16 C 0.140 3.860 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.529 5.529 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.766 16.198 0.517 17.971 hybrid contribution 0.079 -0.108 -0.833 0.844 sum 7.845 16.090 -0.317 17.903 Atomic orbital electron populations 1.20389 0.87803 1.03934 1.02618 1.21079 0.94990 0.87079 1.00710 1.21232 0.89644 0.99843 1.21278 1.18977 0.87104 0.89648 1.03662 1.42530 1.07903 1.04910 1.71641 1.20943 0.91635 0.81907 0.77488 1.90577 1.26518 1.72997 1.46211 1.21555 0.96857 0.94923 0.81387 0.88058 1.92878 1.96148 1.87184 1.40446 1.21568 0.98003 0.95167 0.98146 1.22134 0.99610 0.99527 1.01055 1.21857 0.95894 1.00092 1.02752 1.77260 1.00079 1.08407 1.29013 1.49030 1.00900 1.07876 1.51883 1.19723 0.96042 0.71227 0.99022 1.21355 1.46841 0.98028 0.91319 0.91668 1.24934 0.94639 0.96032 0.98183 1.69923 1.44828 1.07001 1.31120 0.86297 0.77909 0.78799 0.83670 1.19574 1.20632 1.20600 0.91005 0.89839 0.90563 0.82323 0.75238 0.89104 0.92430 0.92711 0.88657 0.92350 0.91677 0.91892 0.92942 0.92706 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.50 9.89 36.01 0.36 -1.14 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.82 9.52 -39.83 -0.38 -6.20 16 4 C 0.26 5.15 8.11 -154.38 -1.25 3.90 16 5 N -0.62 -9.32 5.45 -11.13 -0.06 -9.38 16 6 C 0.50 6.90 7.14 -10.98 -0.08 6.82 16 7 O -0.49 -8.13 10.93 5.55 0.06 -8.07 16 8 C 0.09 0.93 3.46 -27.88 -0.10 0.83 16 9 H 0.10 0.68 7.99 -51.93 -0.42 0.27 16 10 F -0.19 -2.18 16.03 2.25 0.04 -2.15 16 11 C -0.11 -0.99 2.75 -90.62 -0.25 -1.24 16 12 C -0.17 -1.73 8.71 37.16 0.32 -1.41 16 13 C -0.15 -1.04 9.11 37.15 0.34 -0.70 16 14 N -0.32 -7.21 12.59 31.44 0.40 -6.81 16 15 N -0.31 -7.37 3.59 -58.33 -0.21 -7.57 16 16 C 0.26 6.53 5.81 -5.19 -0.03 6.50 16 17 C -0.54 -14.60 9.39 -34.44 -0.32 -14.93 16 18 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 21 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.08 1.50 7.71 -51.93 -0.40 1.10 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.16 3.07 5.92 -52.49 -0.31 2.76 16 29 H 0.41 4.83 8.72 -40.82 -0.36 4.47 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 1.23 5.25 -51.93 -0.27 0.96 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 37 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.06 1.37 7.65 -51.93 -0.40 0.98 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -31.39 330.96 -6.60 -37.98 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.47 Total: 3.78 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.06 Total: -4.55 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.86 Total: -47.81 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.06 Total: -8.07 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.39 -6.60 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.558 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds