Wall clock time and date at job start Tue Mar 31 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 H 1.08994 * 109.46927 * 15.00449 * 8 6 5 10 10 F 1.39903 * 109.47145 * 255.00011 * 8 6 5 11 11 C 1.52998 * 109.46851 * 135.00241 * 8 6 5 12 12 C 1.53001 * 109.47162 * 65.00028 * 11 8 6 13 13 C 1.52995 * 109.47080 * 184.99801 * 11 8 6 14 14 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 15 15 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 16 16 C 1.46500 * 125.97897 * 359.96594 * 15 2 1 17 17 C 1.50698 * 109.46965 * 89.99833 * 16 15 2 18 18 H 1.08000 * 120.00464 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99358 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99496 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47006 * 0.02562 * 21 19 17 23 23 H 1.48494 * 109.46890 * 120.00230 * 21 19 17 24 24 H 1.48501 * 109.46779 * 239.99778 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 28 28 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 29 29 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 30 30 H 1.09004 * 109.47181 * 305.00002 * 11 8 6 31 31 H 1.08994 * 109.47455 * 60.00312 * 12 11 8 32 32 H 1.09003 * 109.47019 * 179.97438 * 12 11 8 33 33 H 1.08998 * 109.47209 * 299.99708 * 12 11 8 34 34 H 1.09004 * 109.47056 * 60.00453 * 13 11 8 35 35 H 1.09003 * 109.47407 * 180.02562 * 13 11 8 36 36 H 1.08996 * 109.47602 * 300.00120 * 13 11 8 37 37 H 1.08994 * 109.46840 * 210.00162 * 16 15 2 38 38 H 1.09004 * 109.46443 * 329.99889 * 16 15 2 39 39 H 0.96998 * 120.00265 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 1 6.7342 3.1070 -0.2482 10 9 6.0367 4.2400 1.2984 11 6 5.6753 4.8291 -0.9924 12 6 4.5229 5.7313 -0.5466 13 6 6.9629 5.6511 -1.0775 14 7 3.6337 -0.6577 -0.0036 15 7 2.3016 -1.0910 -0.0059 16 6 1.8500 -2.4847 -0.0128 17 6 1.6945 -2.9553 -1.4359 18 1 1.9108 -2.2836 -2.2535 19 6 1.2760 -4.2434 -1.6941 20 7 1.0121 -5.0611 -0.6985 21 14 1.0838 -4.8270 -3.4582 22 1 1.4410 -3.7241 -4.3861 23 1 1.9823 -5.9849 -3.6971 24 1 -0.3242 -5.2362 -3.6935 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9719 2.1210 -0.0006 29 1 5.6584 1.0776 0.0055 30 1 5.4484 4.4068 -1.9713 31 1 4.7497 6.1537 0.4323 32 1 4.3926 6.5377 -1.2684 33 1 3.6055 5.1458 -0.4859 34 1 7.7840 5.0083 -1.3952 35 1 6.8322 6.4575 -1.7992 36 1 7.1899 6.0734 -0.0987 37 1 2.5849 -3.1072 0.4976 38 1 0.8916 -2.5584 0.5012 39 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784147607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:28 Heat of formation + Delta-G solvation = -36.366726 kcal Electronic energy + Delta-G solvation = -22145.015118 eV Core-core repulsion = 18616.884713 eV Total energy + Delta-G solvation = -3528.130405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.99868 -42.35196 -40.70821 -36.70944 -36.06449 -35.35890 -33.14984 -32.67679 -29.55466 -28.19308 -28.02514 -27.86722 -25.04627 -23.25226 -21.52679 -21.36036 -20.69126 -18.83546 -18.51500 -18.11037 -17.44065 -17.08010 -16.83771 -16.34195 -16.12011 -15.91208 -15.30940 -14.78844 -14.70892 -14.35378 -14.21253 -13.88147 -13.82346 -13.65465 -13.55300 -13.20628 -13.11053 -12.91484 -12.79350 -12.70098 -12.29030 -12.16033 -12.09887 -11.86530 -11.68631 -11.56207 -11.38553 -10.75214 -10.57588 -9.63559 -9.20442 -8.34190 -6.51829 0.75066 1.21016 1.27625 1.37027 1.39294 1.51879 2.09895 2.16716 2.35615 2.95923 3.19607 3.39846 3.64108 3.79672 3.84274 4.11424 4.26663 4.41424 4.44484 4.58457 4.69648 4.75118 4.83809 4.84371 4.92243 4.96028 5.02245 5.04998 5.10175 5.17250 5.23138 5.40838 5.52216 5.55975 5.79314 5.87856 6.14107 6.22654 6.60387 6.84083 7.01172 7.19456 8.72290 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029252 B = 0.003440 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.982106 B = 8137.380535 C = 8348.519706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.298 4.298 4 C 0.268 3.732 5 N -0.616 5.616 6 C 0.495 3.505 7 O -0.517 6.517 8 C 0.099 3.901 9 H 0.144 0.856 10 F -0.194 7.194 11 C -0.110 4.110 12 C -0.166 4.166 13 C -0.144 4.144 14 N -0.354 5.354 15 N -0.341 5.341 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.050 0.950 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.267 1.267 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.168 0.832 29 H 0.427 0.573 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.052 0.948 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.800 18.396 -0.693 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.329 4.329 4 C 0.014 3.986 5 N -0.266 5.266 6 C 0.280 3.720 7 O -0.391 6.391 8 C 0.060 3.940 9 H 0.162 0.838 10 F -0.175 7.175 11 C -0.129 4.129 12 C -0.223 4.223 13 C -0.201 4.201 14 N -0.185 5.185 15 N -0.124 5.124 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.068 0.932 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.200 1.200 24 H -0.192 1.192 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.121 0.879 28 H 0.185 0.815 29 H 0.266 0.734 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.657 17.442 -0.596 19.481 hybrid contribution -0.175 -0.357 -0.435 0.589 sum 8.482 17.085 -1.031 19.102 Atomic orbital electron populations 1.20512 0.85316 1.04468 1.04129 1.21766 0.96723 0.86428 0.99319 1.21432 0.89886 0.99970 1.21587 1.19332 0.88778 0.89276 1.01199 1.42704 1.07319 1.04986 1.71594 1.21850 0.92743 0.81483 0.75922 1.90572 1.28208 1.73354 1.46938 1.21768 0.96190 0.94899 0.81184 0.83826 1.92867 1.96021 1.87286 1.41301 1.21632 0.98590 0.94769 0.97883 1.22087 0.99059 0.99866 1.01301 1.21833 0.95043 1.00308 1.02916 1.77179 1.00136 1.09934 1.31239 1.48817 1.01731 1.07586 1.54221 1.19268 0.94936 0.72349 0.97873 1.21459 1.47544 0.98410 0.91698 0.93167 1.25740 0.93920 0.95885 1.02291 1.70003 1.45036 1.07470 1.33106 0.85290 0.78469 0.78101 0.78506 1.19779 1.19975 1.19228 0.88916 0.91352 0.87854 0.81470 0.73397 0.88468 0.93024 0.91358 0.91338 0.90569 0.90768 0.92294 0.95707 0.93008 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.84 9.89 71.24 0.70 -2.14 16 2 C 0.09 3.68 6.92 41.38 0.29 3.96 16 3 C -0.30 -11.96 9.52 22.11 0.21 -11.75 16 4 C 0.27 10.65 8.11 133.33 1.08 11.73 16 5 N -0.62 -17.73 5.45 -307.50 -1.68 -19.40 16 6 C 0.49 13.03 7.14 87.66 0.63 13.66 16 7 O -0.52 -16.81 10.93 -3.05 -0.03 -16.84 16 8 C 0.10 1.73 3.46 29.85 0.10 1.83 16 9 H 0.14 1.35 7.99 -2.39 -0.02 1.33 16 10 F -0.19 -4.16 16.03 44.97 0.72 -3.43 16 11 C -0.11 -1.71 2.75 -10.80 -0.03 -1.74 16 12 C -0.17 -3.26 8.71 71.98 0.63 -2.63 16 13 C -0.14 -1.55 9.11 71.98 0.66 -0.90 16 14 N -0.35 -16.42 12.59 -54.44 -0.69 -17.10 16 15 N -0.34 -16.39 3.59 -338.45 -1.22 -17.61 16 16 C 0.27 14.44 5.81 85.63 0.50 14.93 16 17 C -0.55 -30.75 9.39 25.60 0.24 -30.51 16 18 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 19 C 0.02 1.23 5.46 84.66 0.46 1.69 16 20 N -0.92 -51.49 13.29 21.45 0.28 -51.21 16 21 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.07 2.47 7.71 -2.39 -0.02 2.45 16 27 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 28 H 0.17 6.40 5.92 -2.91 -0.02 6.38 16 29 H 0.43 9.32 8.72 -92.71 -0.81 8.51 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.74 5.25 -2.39 -0.01 1.73 16 34 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.70 7.93 -2.39 -0.02 0.68 16 37 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 2.70 7.65 -2.39 -0.02 2.68 16 39 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -68.89 330.96 5.15 -63.75 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.26 Total: 19.04 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.46 Total: -1.85 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.29 Total: -105.32 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.03 Total: -16.84 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.72 Total: -3.43 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -68.89 5.15 -63.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.380 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds