Wall clock time and date at job start Tue Mar 31 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47374 * 2 1 4 4 C 1.38353 * 121.01421 * 258.30268 * 3 2 1 5 5 C 1.39548 * 118.01032 * 180.25708 * 4 3 2 6 6 N 1.38985 * 120.05402 * 179.78198 * 5 4 3 7 7 C 1.46503 * 119.99633 * 359.97438 * 6 5 4 8 8 C 1.50698 * 109.47289 * 179.72482 * 7 6 5 9 9 H 1.08000 * 119.99777 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00384 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00028 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99735 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46801 * 89.99966 * 12 10 8 14 14 H 1.48495 * 109.46889 * 210.00088 * 12 10 8 15 15 H 1.48503 * 109.47028 * 330.00417 * 12 10 8 16 16 N 1.32552 * 119.89965 * 359.50568 * 5 4 3 17 17 N 1.28355 * 122.18797 * 0.25187 * 16 5 4 18 18 C 1.32613 * 122.12660 * 0.02562 * 17 16 5 19 19 C 1.48328 * 120.09963 * 180.02562 * 18 17 16 20 20 C 1.39368 * 120.11960 * 49.52296 * 19 18 17 21 21 C 1.38020 * 119.86961 * 179.79151 * 20 19 18 22 22 C 1.38317 * 120.12285 * 0.48641 * 21 20 19 23 23 C 1.38330 * 120.25417 * 359.74667 * 22 21 20 24 24 C 1.38005 * 120.12339 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47833 * 174.54138 * 1 2 3 26 26 H 1.09004 * 109.47308 * 294.54500 * 1 2 3 27 27 H 1.09003 * 109.46943 * 54.54110 * 1 2 3 28 28 H 1.08997 * 109.47075 * 239.99430 * 2 1 3 29 29 H 1.09006 * 109.46469 * 119.99993 * 2 1 3 30 30 H 1.08002 * 120.99304 * 0.02562 * 4 3 2 31 31 H 0.97001 * 120.00779 * 179.72275 * 6 5 4 32 32 H 1.09002 * 109.46999 * 299.72280 * 7 6 5 33 33 H 1.09003 * 109.47064 * 59.72340 * 7 6 5 34 34 H 0.96994 * 119.99692 * 179.97438 * 11 10 8 35 35 H 1.07999 * 120.06653 * 0.02562 * 20 19 18 36 36 H 1.07998 * 119.93343 * 180.22657 * 21 20 19 37 37 H 1.08008 * 119.87422 * 179.76464 * 22 21 20 38 38 H 1.08000 * 119.93791 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.06887 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4967 2.0127 -1.1611 5 6 2.9524 3.3297 -1.0884 6 7 3.4322 3.9641 -2.2281 7 6 3.4603 3.2500 -3.5070 8 6 4.0143 4.1560 -4.5762 9 1 4.3149 5.1632 -4.3280 10 6 4.1364 3.6996 -5.8715 11 7 4.6194 4.4905 -6.8047 12 14 3.6158 1.9577 -6.3009 13 1 2.1846 1.9524 -6.6973 14 1 4.4434 1.4573 -7.4277 15 1 3.8052 1.0789 -5.1189 16 7 2.9218 3.9765 0.0682 17 7 2.4869 3.4308 1.1455 18 6 2.0394 2.1828 1.1729 19 6 1.5463 1.5971 2.4433 20 6 0.6225 2.2921 3.2217 21 6 0.1639 1.7404 4.4008 22 6 0.6270 0.5047 4.8153 23 6 1.5475 -0.1874 4.0491 24 6 2.0095 0.3524 2.8660 25 1 -0.3634 -1.0229 -0.0978 26 1 -0.3634 0.4269 0.9348 27 1 -0.3633 0.5962 -0.8371 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 2.5096 1.4704 -2.0951 31 1 3.7450 4.8809 -2.1776 32 1 4.0924 2.3666 -3.4160 33 1 2.4485 2.9467 -3.7761 34 1 4.7056 4.1692 -7.7158 35 1 0.2634 3.2589 2.9011 36 1 -0.5547 2.2764 5.0030 37 1 0.2682 0.0784 5.7405 38 1 1.9054 -1.1521 4.3773 39 1 2.7279 -0.1889 2.2683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853547939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:36 Heat of formation + Delta-G solvation = 75.604173 kcal Electronic energy + Delta-G solvation = -21097.119585 eV Core-core repulsion = 18004.613827 eV Total energy + Delta-G solvation = -3092.505758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.83815 -38.98138 -36.12062 -35.26240 -32.98888 -31.96242 -31.03240 -30.48938 -29.56614 -27.30862 -24.88305 -24.30981 -22.49660 -22.16509 -21.63863 -20.89768 -18.13968 -17.38645 -16.97531 -16.15801 -15.74083 -15.20696 -14.82219 -14.56316 -14.51648 -14.14624 -13.91504 -13.56020 -13.38401 -13.22336 -13.04361 -12.72927 -12.54415 -12.43194 -11.84893 -11.53217 -11.39811 -11.20740 -11.10564 -11.03330 -10.48915 -10.33678 -10.11176 -9.67594 -9.65968 -9.28191 -9.01474 -8.87736 -8.70226 -7.35002 -6.34313 -4.38305 0.93635 1.18220 1.31157 1.76207 3.10925 3.17629 3.18973 3.61278 3.69425 4.01052 4.16392 4.34695 4.59304 4.76502 4.84243 4.87917 4.98748 5.02214 5.03984 5.16916 5.23291 5.30931 5.39644 5.47177 5.56231 5.66922 5.79456 5.87611 5.92098 6.07568 6.11150 6.18675 6.28878 6.36650 6.39888 6.51948 6.56802 6.73410 6.86953 7.15197 7.52462 8.12942 8.29684 8.66716 9.20753 9.26024 10.77881 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.030879 B = 0.003703 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.543561 B = 7560.351571 C = 8177.035347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.027 4.027 4 C -0.186 4.186 5 C 0.355 3.645 6 N -0.680 5.680 7 C 0.223 3.777 8 C -0.546 4.546 9 H 0.083 0.917 10 C 0.079 3.921 11 N -0.886 5.886 12 Si 0.878 3.122 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.264 1.264 16 N -0.324 5.324 17 N -0.184 5.184 18 C 0.020 3.980 19 C -0.007 4.007 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.108 4.108 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.145 0.855 31 H 0.409 0.591 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.892 -12.210 18.305 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.038 4.038 4 C -0.220 4.220 5 C 0.111 3.889 6 N -0.307 5.307 7 C 0.100 3.900 8 C -0.583 4.583 9 H 0.101 0.899 10 C -0.125 4.125 11 N -0.523 5.523 12 Si 0.704 3.296 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.189 1.189 16 N -0.178 5.178 17 N -0.026 5.026 18 C -0.130 4.130 19 C -0.009 4.009 20 C -0.112 4.112 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.163 0.837 31 H 0.245 0.755 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.476 -10.850 18.590 23.134 hybrid contribution -0.306 -1.704 -1.347 2.194 sum -8.782 -12.554 17.243 23.066 Atomic orbital electron populations 1.21694 0.94024 1.01940 1.02515 1.20801 0.96944 0.91550 1.03900 1.20752 0.93998 0.96899 0.92110 1.21691 1.05149 0.95309 0.99859 1.20317 0.89332 0.89917 0.89376 1.45068 1.63597 1.16770 1.05259 1.19684 0.96432 0.93789 0.80107 1.20982 1.44429 1.00921 0.92011 0.89921 1.24801 0.94150 0.97754 0.95845 1.69867 1.43984 1.36217 1.02229 0.86827 0.79290 0.84617 0.78894 1.19700 1.20600 1.18860 1.72995 1.21037 1.29141 0.94663 1.72899 1.03443 1.08163 1.18069 1.20714 1.05777 0.93295 0.93210 1.18177 0.96513 0.93916 0.92290 1.21241 0.96285 0.99467 0.94196 1.21084 1.00316 0.95919 0.96522 1.21168 0.97830 0.95321 0.99729 1.21019 0.98000 1.00044 0.94797 1.21226 0.99973 0.95020 0.96531 0.92047 0.92216 0.92476 0.90428 0.89281 0.83689 0.75510 0.95801 0.96281 0.92027 0.85742 0.85982 0.86240 0.85974 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.82 37.16 0.36 -1.11 16 2 C -0.09 -1.05 5.51 -27.89 -0.15 -1.20 16 3 C -0.03 -0.41 5.16 -103.97 -0.54 -0.94 16 4 C -0.19 -3.17 9.08 -39.05 -0.35 -3.53 16 5 C 0.35 6.87 7.74 -154.75 -1.20 5.67 16 6 N -0.68 -13.99 5.72 -61.45 -0.35 -14.34 16 7 C 0.22 4.97 3.74 -5.19 -0.02 4.95 16 8 C -0.55 -14.44 9.83 -34.44 -0.34 -14.78 16 9 H 0.08 2.36 7.84 -52.49 -0.41 1.94 16 10 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 11 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 12 Si 0.88 19.73 27.47 -169.99 -4.67 15.06 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 16 N -0.32 -6.44 11.53 31.24 0.36 -6.08 16 17 N -0.18 -3.40 11.39 33.37 0.38 -3.02 16 18 C 0.02 0.32 6.37 -82.77 -0.53 -0.21 16 19 C -0.01 -0.09 4.42 -104.90 -0.46 -0.55 16 20 C -0.09 -1.11 9.72 -39.24 -0.38 -1.49 16 21 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 22 C -0.12 -1.07 10.04 -39.52 -0.40 -1.46 16 23 C -0.12 -1.09 10.03 -39.63 -0.40 -1.49 16 24 C -0.11 -1.17 7.96 -39.25 -0.31 -1.49 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 29 H 0.09 0.86 4.51 -51.93 -0.23 0.62 16 30 H 0.15 2.34 6.82 -52.49 -0.36 1.99 16 31 H 0.41 8.32 8.45 -40.82 -0.34 7.97 16 32 H 0.02 0.54 7.03 -51.93 -0.37 0.17 16 33 H 0.02 0.42 7.37 -51.93 -0.38 0.04 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.23 6.40 -52.49 -0.34 0.89 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -29.64 326.37 -8.73 -38.37 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.93 Total: 7.08 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -5.21 Total: -17.15 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 1.16 Total: -48.28 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.67 Total: 15.06 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.64 -8.73 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853547939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.979 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds