Wall clock time and date at job start Tue Mar 31 2020 06:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47048 * 2 1 4 4 C 1.52995 * 109.47339 * 239.99758 * 2 1 3 5 5 C 1.50702 * 109.47286 * 64.99831 * 4 2 1 6 6 H 1.08008 * 119.99663 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00658 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99575 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00382 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47368 * 59.99900 * 9 7 5 11 11 H 1.48501 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47361 * 299.99771 * 9 7 5 13 13 C 1.53005 * 109.47384 * 119.99779 * 2 1 3 14 14 N 1.46896 * 109.46832 * 295.00424 * 13 2 1 15 15 C 1.46905 * 110.99903 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.46978 * 324.99473 * 15 14 13 17 17 C 1.53000 * 109.46754 * 84.99792 * 15 14 13 18 18 C 1.50698 * 109.47056 * 204.99727 * 15 14 13 19 19 C 1.38415 * 120.02708 * 135.00087 * 18 15 14 20 20 F 1.35100 * 120.00946 * 359.95724 * 19 18 15 21 21 C 1.38474 * 119.97981 * 179.97438 * 19 18 15 22 22 C 1.38210 * 120.02023 * 0.28104 * 21 19 18 23 23 C 1.38201 * 120.05118 * 359.44081 * 22 21 19 24 24 C 1.38420 * 120.02535 * 314.97594 * 18 15 14 25 25 F 1.35097 * 120.01373 * 0.02562 * 24 18 15 26 26 H 1.08995 * 109.47342 * 300.00208 * 1 2 3 27 27 H 1.08994 * 109.47353 * 60.00282 * 1 2 3 28 28 H 1.09008 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47694 * 184.99614 * 4 2 1 30 30 H 1.09001 * 109.47432 * 304.99687 * 4 2 1 31 31 H 0.96996 * 120.00101 * 179.97438 * 8 7 5 32 32 H 1.08991 * 109.47144 * 175.00361 * 13 2 1 33 33 H 1.08998 * 109.47045 * 55.00057 * 13 2 1 34 34 H 1.00901 * 111.00394 * 303.95271 * 14 13 2 35 35 H 1.09001 * 109.47650 * 299.99740 * 17 15 14 36 36 H 1.09003 * 109.47405 * 60.00358 * 17 15 14 37 37 H 1.09005 * 109.47004 * 179.97438 * 17 15 14 38 38 H 1.08002 * 119.98641 * 179.97438 * 21 19 18 39 39 H 1.08000 * 119.96986 * 179.70463 * 22 21 19 40 40 H 1.08002 * 119.98829 * 180.25980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0918 1.9227 -5.1872 11 1 1.9937 -0.1374 -6.4621 12 1 0.0189 0.6703 -5.3090 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.0807 -1.7078 3.5333 17 6 3.5684 -0.2064 3.9498 18 6 1.2493 -0.2286 4.8273 19 6 0.8000 -1.1884 5.7177 20 9 1.1455 -2.4832 5.5467 21 6 -0.0040 -0.8211 6.7836 22 6 -0.3627 0.5026 6.9552 23 6 0.0900 1.4627 6.0702 24 6 0.8942 1.0977 5.0035 25 9 1.3319 2.0356 4.1353 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1264 -0.7995 -1.2056 30 1 1.6055 -1.7199 -1.2951 31 1 2.9222 -1.8427 -4.7317 32 1 3.1263 -0.7993 1.2056 33 1 1.6055 -1.7197 1.2952 34 1 1.9880 0.9874 2.3966 35 1 4.2018 -0.4946 3.1107 36 1 3.6124 0.8745 4.0838 37 1 3.9196 -0.6991 4.8565 38 1 -0.3550 -1.5699 7.4782 39 1 -0.9937 0.7875 7.7841 40 1 -0.1875 2.4973 6.2077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876951034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:41 Heat of formation + Delta-G solvation = -84.653120 kcal Electronic energy + Delta-G solvation = -22196.073463 eV Core-core repulsion = 18645.929241 eV Total energy + Delta-G solvation = -3550.144222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.15043 -49.06240 -39.21659 -37.26444 -34.84837 -32.41563 -30.85067 -30.47305 -28.85301 -26.70525 -25.28204 -23.92018 -23.06931 -22.27169 -21.04847 -19.09740 -18.25355 -17.38654 -16.38910 -16.22366 -16.04323 -15.71310 -15.37135 -14.89307 -14.72237 -14.53791 -14.48459 -14.25019 -13.53989 -12.97165 -12.87881 -12.67381 -12.45491 -12.23194 -12.13182 -12.08028 -11.58345 -11.46897 -11.30961 -10.92176 -10.81874 -10.74649 -10.26765 -10.23089 -9.67075 -9.19615 -9.02542 -8.94165 -8.89087 -8.29776 -8.13714 -5.94776 -3.95807 0.77493 0.80809 3.15063 3.36597 3.40685 3.43446 3.74167 4.15961 4.23688 4.41429 4.50748 4.59102 4.73160 4.91104 5.09752 5.18018 5.40863 5.44222 5.59025 5.61579 5.70982 5.74649 5.82798 5.85273 5.91867 5.94642 6.06347 6.20439 6.44394 6.56275 6.59513 6.72546 7.03878 7.21606 7.22270 7.35435 7.65733 7.72792 7.88690 8.05547 8.49680 9.10321 9.67333 11.16797 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029245 B = 0.003407 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.196913 B = 8216.647779 C = 8535.448540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.681 5.681 15 C 0.120 3.880 16 H 0.094 0.906 17 C -0.178 4.178 18 C -0.132 4.132 19 C 0.130 3.870 20 F -0.130 7.130 21 C -0.167 4.167 22 C -0.069 4.069 23 C -0.168 4.168 24 C 0.149 3.851 25 F -0.123 7.123 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.027 0.973 33 H 0.066 0.934 34 H 0.345 0.655 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.446 3.392 24.102 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.313 5.313 15 C 0.009 3.991 16 H 0.112 0.888 17 C -0.237 4.237 18 C -0.135 4.135 19 C 0.110 3.890 20 F -0.109 7.109 21 C -0.186 4.186 22 C -0.087 4.087 23 C -0.187 4.187 24 C 0.129 3.871 25 F -0.101 7.101 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.956 2.980 23.929 24.436 hybrid contribution 0.848 0.532 -1.151 1.526 sum -3.108 3.513 22.778 23.256 Atomic orbital electron populations 1.21581 0.95727 1.00539 1.00111 1.21196 0.96015 0.98934 0.93932 0.92809 1.19113 0.95887 0.95567 0.90383 1.21207 1.34623 1.08262 0.90999 0.92619 1.25020 0.95351 0.95105 0.99078 1.69959 1.39095 1.21237 1.23453 0.86685 0.78907 0.80092 0.82475 1.20323 1.21392 1.20261 1.22195 0.97376 0.97620 0.89173 1.60651 1.63747 1.06246 1.00705 1.20322 0.90577 1.00159 0.88018 0.88817 1.22474 0.96682 1.02003 1.02526 1.19971 1.02866 0.91960 0.98692 1.17194 0.97767 0.78186 0.95807 1.91517 1.90466 1.33859 1.95030 1.21150 1.00871 0.97941 0.98631 1.20782 0.98047 0.91397 0.98523 1.21210 1.00459 1.01564 0.95433 1.17122 0.96263 0.85040 0.88665 1.91485 1.87409 1.63503 1.67738 0.94016 0.92772 0.94190 0.96932 0.96552 0.93064 0.95481 0.91503 0.83507 0.91375 0.92116 0.92126 0.84224 0.84177 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.89 37.16 0.33 -2.14 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.94 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.59 8.41 -34.44 -0.29 -14.88 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.06 1.15 4.87 -3.82 -0.02 1.13 16 14 N -0.68 -10.49 5.13 -107.95 -0.55 -11.04 16 15 C 0.12 1.60 2.60 -68.86 -0.18 1.42 16 16 H 0.09 1.31 6.93 -51.93 -0.36 0.95 16 17 C -0.18 -2.10 9.10 37.16 0.34 -1.76 16 18 C -0.13 -1.62 4.96 -104.49 -0.52 -2.14 16 19 C 0.13 1.47 7.24 -39.43 -0.29 1.18 16 20 F -0.13 -1.58 16.27 2.25 0.04 -1.55 16 21 C -0.17 -1.43 10.03 -39.50 -0.40 -1.83 16 22 C -0.07 -0.51 10.04 -39.61 -0.40 -0.91 16 23 C -0.17 -1.48 10.02 -39.51 -0.40 -1.88 16 24 C 0.15 1.72 6.98 -39.43 -0.28 1.44 16 25 F -0.12 -1.56 14.32 2.25 0.03 -1.53 16 26 H 0.04 0.77 7.75 -51.93 -0.40 0.36 16 27 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 28 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.03 0.48 7.44 -51.93 -0.39 0.09 16 33 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.34 5.24 6.71 -39.29 -0.26 4.98 16 35 H 0.07 0.83 7.45 -51.93 -0.39 0.45 16 36 H 0.06 0.70 7.63 -51.93 -0.40 0.30 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 334.56 15.07 5.04 5.04 Total: -1.00 -30.60 334.56 -8.12 -38.72 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.86 Total: 0.18 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.53 Total: -20.19 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.18 Total: -37.64 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.60 -8.12 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876951034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.935 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds