Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47048 * 2 1 4 4 C 1.52995 * 109.47339 * 239.99758 * 2 1 3 5 5 C 1.50702 * 109.47286 * 64.99831 * 4 2 1 6 6 H 1.08008 * 119.99663 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00658 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99575 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00382 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47368 * 59.99900 * 9 7 5 11 11 H 1.48501 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47361 * 299.99771 * 9 7 5 13 13 C 1.53005 * 109.47384 * 119.99779 * 2 1 3 14 14 N 1.46896 * 109.46832 * 295.00424 * 13 2 1 15 15 C 1.46905 * 110.99903 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.46978 * 324.99473 * 15 14 13 17 17 C 1.53000 * 109.46754 * 84.99792 * 15 14 13 18 18 C 1.50698 * 109.47056 * 204.99727 * 15 14 13 19 19 C 1.38415 * 120.02708 * 135.00087 * 18 15 14 20 20 F 1.35100 * 120.00946 * 359.95724 * 19 18 15 21 21 C 1.38474 * 119.97981 * 179.97438 * 19 18 15 22 22 C 1.38210 * 120.02023 * 0.28104 * 21 19 18 23 23 C 1.38201 * 120.05118 * 359.44081 * 22 21 19 24 24 C 1.38420 * 120.02535 * 314.97594 * 18 15 14 25 25 F 1.35097 * 120.01373 * 0.02562 * 24 18 15 26 26 H 1.08995 * 109.47342 * 300.00208 * 1 2 3 27 27 H 1.08994 * 109.47353 * 60.00282 * 1 2 3 28 28 H 1.09008 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47694 * 184.99614 * 4 2 1 30 30 H 1.09001 * 109.47432 * 304.99687 * 4 2 1 31 31 H 0.96996 * 120.00101 * 179.97438 * 8 7 5 32 32 H 1.08991 * 109.47144 * 175.00361 * 13 2 1 33 33 H 1.08998 * 109.47045 * 55.00057 * 13 2 1 34 34 H 1.00901 * 111.00394 * 303.95271 * 14 13 2 35 35 H 1.09001 * 109.47650 * 299.99740 * 17 15 14 36 36 H 1.09003 * 109.47405 * 60.00358 * 17 15 14 37 37 H 1.09005 * 109.47004 * 179.97438 * 17 15 14 38 38 H 1.08002 * 119.98641 * 179.97438 * 21 19 18 39 39 H 1.08000 * 119.96986 * 179.70463 * 22 21 19 40 40 H 1.08002 * 119.98829 * 180.25980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9923 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8511 9 14 1.4988 0.5627 -5.2496 10 1 2.0918 1.9227 -5.1872 11 1 1.9937 -0.1374 -6.4621 12 1 0.0189 0.6703 -5.3090 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.0807 -1.7078 3.5333 17 6 3.5684 -0.2064 3.9498 18 6 1.2493 -0.2286 4.8273 19 6 0.8000 -1.1884 5.7177 20 9 1.1455 -2.4832 5.5467 21 6 -0.0040 -0.8211 6.7836 22 6 -0.3627 0.5026 6.9552 23 6 0.0900 1.4627 6.0702 24 6 0.8942 1.0977 5.0035 25 9 1.3319 2.0356 4.1353 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1264 -0.7995 -1.2056 30 1 1.6055 -1.7199 -1.2951 31 1 2.9222 -1.8427 -4.7317 32 1 3.1263 -0.7993 1.2056 33 1 1.6055 -1.7197 1.2952 34 1 1.9880 0.9874 2.3966 35 1 4.2018 -0.4946 3.1107 36 1 3.6124 0.8745 4.0838 37 1 3.9196 -0.6991 4.8565 38 1 -0.3550 -1.5699 7.4782 39 1 -0.9937 0.7875 7.7841 40 1 -0.1875 2.4973 6.2077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876951034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = -101.354952 kcal Electronic energy + Delta-G solvation = -22196.797708 eV Core-core repulsion = 18645.929241 eV Total energy + Delta-G solvation = -3550.868468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.00402 -49.93149 -40.03872 -38.55669 -36.41837 -34.37809 -32.07267 -31.19064 -29.95362 -28.66622 -26.79779 -25.09273 -24.21761 -23.59236 -22.05348 -20.78800 -19.06572 -18.56825 -18.15079 -17.19198 -16.90633 -16.58961 -16.51173 -16.27533 -16.16103 -15.71324 -15.64608 -15.38634 -14.81037 -14.45132 -14.24821 -13.88721 -13.65783 -13.51299 -13.22077 -13.05131 -13.00299 -12.83062 -12.76080 -12.56425 -12.50324 -12.21889 -12.03027 -11.84742 -11.53466 -11.12024 -10.95364 -10.53587 -9.84815 -9.67578 -9.40020 -8.17875 -6.27319 0.03765 0.07050 1.39704 1.42797 1.50468 2.41206 2.43612 2.97230 3.09689 3.15357 3.49133 3.54677 3.79162 3.93534 4.08812 4.12442 4.22094 4.29430 4.34111 4.46839 4.58844 4.69160 4.83477 4.87108 4.91500 4.96717 4.98935 5.05495 5.12975 5.14040 5.25951 5.26598 5.43235 5.47336 5.53880 5.78387 5.84038 5.87183 5.98810 6.29795 6.39736 6.88078 7.40869 8.94139 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.029245 B = 0.003407 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.196913 B = 8216.647779 C = 8535.448540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.073 4.073 3 H 0.053 0.947 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.679 5.679 15 C 0.120 3.880 16 H 0.081 0.919 17 C -0.171 4.171 18 C -0.152 4.152 19 C 0.108 3.892 20 F -0.143 7.143 21 C -0.159 4.159 22 C -0.055 4.055 23 C -0.162 4.162 24 C 0.125 3.875 25 F -0.136 7.136 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.034 0.966 29 H -0.013 1.013 30 H -0.010 1.010 31 H 0.262 0.738 32 H 0.023 0.977 33 H 0.060 0.940 34 H 0.346 0.654 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.182 0.818 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 4.888 25.922 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.050 4.050 14 N -0.311 5.311 15 C 0.009 3.991 16 H 0.099 0.901 17 C -0.230 4.230 18 C -0.155 4.155 19 C 0.089 3.911 20 F -0.121 7.121 21 C -0.178 4.178 22 C -0.073 4.073 23 C -0.181 4.181 24 C 0.106 3.894 25 F -0.114 7.114 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.005 0.995 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.183 0.817 39 H 0.199 0.801 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.464 4.486 25.771 26.723 hybrid contribution 1.295 0.047 -1.609 2.066 sum -4.169 4.533 24.162 24.935 Atomic orbital electron populations 1.21464 0.94756 1.00277 1.00378 1.21004 0.96673 0.98400 0.93113 0.92840 1.18993 0.94108 0.94650 0.92609 1.21607 1.34577 1.08606 0.92070 0.92099 1.25965 0.95213 0.96111 1.02677 1.70100 1.40245 1.22950 1.24366 0.85542 0.78950 0.78760 0.78064 1.19208 1.20963 1.19206 1.21881 0.96901 0.97107 0.89158 1.60580 1.63940 1.06137 1.00470 1.20297 0.91884 0.99224 0.87653 0.90084 1.22394 0.95624 1.02260 1.02705 1.19884 1.03915 0.92858 0.98794 1.17497 0.99068 0.77592 0.96984 1.91483 1.90781 1.34614 1.95238 1.21523 0.99309 0.99271 0.97695 1.21277 0.97026 0.90302 0.98681 1.21567 0.99028 1.03188 0.94305 1.17414 0.97671 0.84591 0.89745 1.91446 1.87795 1.63810 1.68393 0.91891 0.94155 0.94703 0.99496 0.99209 0.92915 0.95868 0.92184 0.83291 0.92282 0.91793 0.90848 0.81738 0.80108 0.81931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.50 8.89 71.98 0.64 -3.86 16 2 C -0.07 -3.13 2.48 -10.79 -0.03 -3.15 16 3 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.03 1.84 4.45 29.85 0.13 1.97 16 5 C -0.53 -30.71 8.41 25.60 0.22 -30.49 16 6 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 9 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 C 0.08 2.87 4.87 86.31 0.42 3.30 16 14 N -0.68 -21.03 5.13 -495.46 -2.54 -23.57 16 15 C 0.12 3.22 2.60 44.17 0.11 3.34 16 16 H 0.08 2.36 6.93 -2.39 -0.02 2.34 16 17 C -0.17 -4.05 9.10 71.98 0.65 -3.40 16 18 C -0.15 -3.63 4.96 -19.78 -0.10 -3.73 16 19 C 0.11 2.31 7.24 22.37 0.16 2.47 16 20 F -0.14 -3.44 16.27 44.97 0.73 -2.71 16 21 C -0.16 -2.25 10.03 22.32 0.22 -2.02 16 22 C -0.06 -0.58 10.04 22.25 0.22 -0.36 16 23 C -0.16 -2.37 10.02 22.32 0.22 -2.15 16 24 C 0.13 2.72 6.98 22.37 0.16 2.88 16 25 F -0.14 -3.35 14.32 44.97 0.64 -2.70 16 26 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 27 H 0.04 1.71 6.95 -2.39 -0.02 1.69 16 28 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 29 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.02 0.86 7.44 -2.39 -0.02 0.84 16 33 H 0.06 2.27 8.05 -2.39 -0.02 2.25 16 34 H 0.35 10.54 6.71 -89.69 -0.60 9.93 16 35 H 0.06 1.48 7.45 -2.39 -0.02 1.46 16 36 H 0.06 1.46 7.63 -2.39 -0.02 1.44 16 37 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 40 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -67.36 334.56 5.09 -62.28 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.44 Total: 12.29 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 3.50 Total: -34.88 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.26 Total: -81.52 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.38 Total: -5.41 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.36 5.09 -62.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876951034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.078 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds