Wall clock time and date at job start Tue Mar 31 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00444 * 2 1 4 4 H 1.48510 * 109.46881 * 270.00283 * 3 2 1 5 5 H 1.48501 * 109.46922 * 29.99539 * 3 2 1 6 6 H 1.48499 * 109.47500 * 150.00083 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47215 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46871 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46628 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00309 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99765 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00096 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47303 * 179.97438 * 15 14 12 17 17 C 1.39875 * 126.03694 * 90.02338 * 16 15 14 18 18 N 1.30839 * 108.20184 * 179.97438 * 17 16 15 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 C 1.53002 * 109.46877 * 304.99761 * 20 19 18 22 22 F 1.39895 * 109.47016 * 179.97438 * 21 20 19 23 23 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 24 24 H 0.96996 * 120.00163 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47079 * 60.00280 * 9 7 2 26 26 H 1.09002 * 109.47262 * 300.00634 * 9 7 2 27 27 H 1.08998 * 109.46615 * 60.00204 * 10 9 7 28 28 H 1.08997 * 109.46902 * 300.00201 * 10 9 7 29 29 H 1.08998 * 109.47399 * 60.00605 * 11 10 9 30 30 H 1.08997 * 109.47457 * 299.99782 * 11 10 9 31 31 H 0.96998 * 120.00005 * 359.97438 * 14 12 11 32 32 H 1.09003 * 109.47147 * 59.99549 * 15 14 12 33 33 H 1.09002 * 109.47157 * 299.99926 * 15 14 12 34 34 H 1.08003 * 125.89835 * 359.71921 * 17 16 15 35 35 H 1.08998 * 109.47019 * 64.99789 * 20 19 18 36 36 H 1.09005 * 109.47133 * 184.99915 * 20 19 18 37 37 H 1.09001 * 109.47081 * 300.00306 * 21 20 19 38 38 H 1.08995 * 109.46979 * 59.99999 * 21 20 19 39 39 H 1.07997 * 126.13040 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0022 14 7 2.0100 -7.4033 -0.0030 15 6 2.9620 -8.5168 -0.0030 16 6 2.2084 -9.8219 -0.0038 17 6 1.7978 -10.5343 -1.1353 18 7 1.1752 -11.6133 -0.7352 19 7 1.1695 -11.6212 0.6656 20 6 0.5746 -12.6526 1.5193 21 6 -0.8967 -12.8397 1.1432 22 9 -1.4646 -13.8249 1.9579 23 6 1.8097 -10.5117 1.0900 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8537 -5.0447 -0.8914 30 1 0.8531 -5.0452 0.8885 31 1 1.0564 -7.5805 -0.0030 32 1 3.5881 -8.4596 0.8874 33 1 3.5893 -8.4585 -0.8925 34 1 1.9623 -10.2420 -2.1619 35 1 1.1079 -13.5927 1.3787 36 1 0.6467 -12.3465 2.5630 37 1 -1.4300 -11.8995 1.2838 38 1 -0.9688 -13.1457 0.0996 39 1 1.9745 -10.2255 2.1182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888331986.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:10 Heat of formation + Delta-G solvation = -54.663577 kcal Electronic energy + Delta-G solvation = -20616.196619 eV Core-core repulsion = 17087.272803 eV Total energy + Delta-G solvation = -3528.923816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.78348 -42.30383 -40.55410 -36.39791 -35.93766 -34.81444 -33.98482 -31.77119 -30.57149 -29.52122 -26.81776 -25.28855 -24.60357 -22.25382 -21.84528 -21.39567 -21.02152 -18.69499 -18.27317 -17.63871 -17.40450 -16.97181 -16.73737 -16.47327 -16.40186 -16.18428 -15.50249 -15.32811 -14.89249 -14.72023 -14.27934 -14.18824 -13.86220 -13.77538 -13.61188 -13.24491 -12.96942 -12.57038 -12.49360 -12.48052 -12.36924 -12.02048 -11.57355 -11.50993 -11.43006 -11.23756 -10.80087 -10.52441 -10.48221 -9.97839 -9.54390 -8.18464 -6.28125 0.80663 1.40408 1.40979 1.42042 1.53582 1.58403 1.75683 2.42407 2.60563 3.14460 3.19845 3.60863 3.79799 3.90628 3.99305 4.00982 4.16706 4.21075 4.30817 4.33124 4.36365 4.47656 4.73233 4.77662 4.83568 4.94373 5.02312 5.13474 5.16290 5.23563 5.52730 5.57398 5.60051 5.79234 5.90044 5.96427 6.30157 6.62142 6.67488 6.87743 7.37267 7.40613 8.93043 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031900 B = 0.002208 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.539653 B =12675.555976 C =13242.239797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.516 3.484 13 O -0.586 6.586 14 N -0.714 5.714 15 C 0.204 3.796 16 C -0.266 4.266 17 C 0.065 3.935 18 N -0.326 5.326 19 N -0.376 5.376 20 C 0.104 3.896 21 C 0.056 3.944 22 F -0.218 7.218 23 C 0.092 3.908 24 H 0.264 0.736 25 H 0.000 1.000 26 H 0.001 0.999 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.413 0.587 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.197 0.803 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.895 -28.734 3.344 28.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.012 4.012 10 C -0.121 4.121 11 C -0.171 4.171 12 C 0.304 3.696 13 O -0.466 6.466 14 N -0.367 5.367 15 C 0.080 3.920 16 C -0.277 4.277 17 C -0.122 4.122 18 N -0.146 5.146 19 N -0.157 5.157 20 C -0.018 4.018 21 C 0.000 4.000 22 F -0.200 7.200 23 C -0.055 4.055 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.249 0.751 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.214 0.786 35 H 0.120 0.880 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.890 -29.720 3.102 29.895 hybrid contribution 0.259 1.571 0.120 1.596 sum -0.631 -28.150 3.221 28.340 Atomic orbital electron populations 1.70063 1.07497 1.27747 1.51705 1.25919 0.95841 1.03098 0.94782 0.85497 0.78643 0.78701 0.78518 1.19763 1.20364 1.19223 1.21710 0.93368 0.92822 1.50519 0.93013 1.19032 0.94251 0.92463 0.95473 1.21158 0.97591 0.93039 1.00307 1.21671 0.98004 0.91842 1.05566 1.20978 0.89251 0.84817 0.74545 1.90667 1.18979 1.85546 1.51421 1.46100 1.11198 1.04416 1.74975 1.19323 0.89879 0.80585 1.02221 1.19968 1.14013 1.01027 0.92740 1.24186 0.95525 0.91541 1.00900 1.77370 1.24894 1.22770 0.89580 1.48559 1.43908 1.18667 1.04560 1.22412 0.93194 0.91426 0.94719 1.22150 0.92616 0.90655 0.94587 1.92782 1.86176 1.65249 1.75769 1.22926 0.94447 0.86767 1.01377 0.92702 0.98163 0.98081 0.94032 0.94133 0.87664 0.87497 0.75107 0.91283 0.91654 0.78612 0.88028 0.84570 0.89402 0.89914 0.77606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.08 -3.61 4.44 30.59 0.14 -3.48 16 11 C -0.13 -4.13 5.70 29.85 0.17 -3.96 16 12 C 0.52 15.54 7.83 87.66 0.69 16.23 16 13 O -0.59 -22.97 15.98 -3.03 -0.05 -23.02 16 14 N -0.71 -14.56 5.55 -466.78 -2.59 -17.15 16 15 C 0.20 3.70 6.15 85.63 0.53 4.23 16 16 C -0.27 -3.78 5.47 -20.14 -0.11 -3.89 16 17 C 0.07 1.00 11.96 85.24 1.02 2.02 16 18 N -0.33 -5.47 12.42 -57.02 -0.71 -6.18 16 19 N -0.38 -4.45 3.68 -348.04 -1.28 -5.73 16 20 C 0.10 0.67 6.96 86.38 0.60 1.27 16 21 C 0.06 0.48 7.74 71.98 0.56 1.04 16 22 F -0.22 -2.78 17.36 44.97 0.78 -2.00 16 23 C 0.09 0.99 11.36 83.54 0.95 1.94 16 24 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 26 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 27 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.41 6.33 8.46 -92.71 -0.78 5.54 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.20 2.34 8.06 -2.91 -0.02 2.31 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.14 0.15 8.07 -2.38 -0.02 0.13 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.21 0.89 8.06 -2.91 -0.02 0.87 16 Total: -1.00 -76.47 344.47 4.11 -72.36 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: 0.26 Total: 5.24 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 5.38 Total: -14.53 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -4.29 Total: -85.30 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.47 4.11 -72.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888331986.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.698 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds