Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47090 * 179.97438 * 9 8 7 11 11 F 1.39895 * 109.47387 * 179.97438 * 10 9 8 12 12 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 13 13 N 1.30448 * 108.02337 * 359.61207 * 12 3 2 14 14 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 15 15 C 1.46503 * 125.75762 * 359.97438 * 14 2 1 16 16 C 1.50696 * 109.46974 * 90.00112 * 15 14 2 17 17 H 1.08001 * 120.00163 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99873 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99984 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47063 * 90.00165 * 20 18 16 22 22 H 1.48501 * 109.47045 * 210.00089 * 20 18 16 23 23 H 1.48501 * 109.46990 * 330.00178 * 20 18 16 24 24 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 25 25 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 26 26 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 27 27 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 28 28 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 29 29 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 30 30 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 31 31 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 32 32 H 1.08994 * 109.47627 * 299.99497 * 9 8 7 33 33 H 1.09001 * 109.47155 * 60.00044 * 9 8 7 34 34 H 1.08999 * 109.47241 * 300.00555 * 10 9 8 35 35 H 1.09001 * 109.46760 * 60.00201 * 10 9 8 36 36 H 1.08000 * 125.99145 * 179.77305 * 12 3 2 37 37 H 1.09004 * 109.46911 * 210.00324 * 15 14 2 38 38 H 1.09002 * 109.46643 * 329.99944 * 15 14 2 39 39 H 0.96997 * 120.00146 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1353 7.2859 0.0121 10 6 4.3610 8.2017 0.0203 11 9 3.9452 9.5375 0.0191 12 6 3.6589 0.6498 -0.0059 13 7 3.6340 -0.6545 -0.0007 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 -0.0006 16 6 1.6946 -2.9535 -1.4214 17 1 1.9103 -2.2855 -2.2423 18 6 1.2772 -4.2431 -1.6734 19 7 1.0141 -5.0563 -0.6739 20 14 1.0839 -4.8349 -3.4347 21 1 2.3648 -5.4227 -3.9027 22 1 0.0152 -5.8641 -3.4966 23 1 0.7182 -3.6884 -4.3048 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 3.7462 3.2972 0.0098 28 1 1.7699 5.1049 -0.8874 29 1 1.7618 5.1023 0.8925 30 1 4.1842 5.6296 0.9054 31 1 4.1932 5.6324 -0.8745 32 1 2.5415 7.4813 -0.8808 33 1 2.5321 7.4790 0.8991 34 1 4.9546 8.0063 0.9133 35 1 4.9646 8.0088 -0.8666 36 1 4.5448 1.2675 -0.0108 37 1 2.5848 -3.0960 0.5130 38 1 0.8915 -2.5472 0.5136 39 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891081809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = -44.513883 kcal Electronic energy + Delta-G solvation = -21240.394900 eV Core-core repulsion = 17711.911207 eV Total energy + Delta-G solvation = -3528.483692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.95065 -40.79099 -38.88169 -36.14824 -33.96730 -33.44778 -32.06173 -31.15235 -28.93392 -27.15648 -26.57484 -23.95951 -23.18436 -21.86655 -21.77824 -19.80285 -18.98734 -17.12035 -16.89641 -16.77508 -16.03546 -15.99171 -15.54116 -15.12947 -14.95130 -14.66580 -14.47322 -13.89401 -13.81125 -13.12888 -12.77476 -12.65700 -12.44420 -12.41381 -12.10668 -12.05734 -11.79030 -11.48741 -11.47967 -11.23271 -11.13100 -11.00933 -10.89730 -10.38157 -10.19569 -9.94788 -9.41991 -8.98526 -8.72167 -8.60182 -7.92412 -6.34695 -4.42539 2.18186 2.78207 3.13978 3.17562 3.23971 3.28976 3.52124 3.91261 4.16694 4.23380 4.32058 4.50170 4.68565 4.77426 4.88395 4.99775 5.12185 5.25641 5.26623 5.32653 5.35381 5.53788 5.68019 5.74852 5.79298 5.84983 5.95677 6.12426 6.41177 6.53389 6.61253 6.78781 6.89684 7.14636 7.54931 7.71868 7.76037 7.78232 8.36381 8.59657 8.63378 9.24372 10.73531 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.002633 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.986517 B =10631.445407 C =10660.138639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.334 4.334 4 C 0.603 3.397 5 O -0.556 6.556 6 N -0.737 5.737 7 C 0.124 3.876 8 C -0.130 4.130 9 C -0.151 4.151 10 C 0.061 3.939 11 F -0.221 7.221 12 C 0.057 3.943 13 N -0.296 5.296 14 N -0.314 5.314 15 C 0.251 3.749 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.398 0.602 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.175 0.825 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 19.974 2.415 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.394 3.606 5 O -0.435 6.435 6 N -0.389 5.389 7 C 0.000 4.000 8 C -0.168 4.168 9 C -0.189 4.189 10 C 0.006 3.994 11 F -0.202 7.202 12 C -0.130 4.130 13 N -0.116 5.116 14 N -0.091 5.091 15 C 0.134 3.866 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.196 1.196 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.232 0.768 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.192 0.808 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.026 18.742 2.473 19.561 hybrid contribution 0.053 0.177 -0.959 0.976 sum 5.078 18.918 1.515 19.647 Atomic orbital electron populations 1.20570 0.86805 1.03773 1.03939 1.21485 0.94979 0.86544 0.94181 1.19676 0.93144 0.92517 1.29592 1.17312 0.84997 0.83932 0.74398 1.90693 1.16747 1.84499 1.51607 1.45707 1.09788 1.05481 1.77960 1.21199 0.96104 0.80201 1.02451 1.21692 0.98235 0.93627 1.03279 1.22075 0.98169 0.94232 1.04417 1.22013 0.97219 0.76548 1.03610 1.92769 1.92169 1.37056 1.98194 1.23708 0.96304 0.92630 1.00341 1.77135 0.98657 1.12278 1.23524 1.49372 1.02468 1.08317 1.48924 1.19859 0.96419 0.70899 0.99453 1.21241 1.47459 0.98122 0.90990 0.91676 1.24927 0.94439 0.96001 0.98321 1.69911 1.44500 1.07160 1.31127 0.86318 0.78093 0.78637 0.83447 1.20246 1.20773 1.19597 0.89827 0.90866 0.88834 0.76827 0.91595 0.91610 0.90802 0.90790 0.90312 0.90332 0.90702 0.90703 0.80791 0.92511 0.92538 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.34 16 2 C 0.17 3.36 7.01 -81.61 -0.57 2.79 16 3 C -0.33 -6.03 6.13 -105.07 -0.64 -6.67 16 4 C 0.60 9.84 7.81 -12.52 -0.10 9.74 16 5 O -0.56 -10.56 14.84 5.28 0.08 -10.48 16 6 N -0.74 -8.49 5.55 -61.38 -0.34 -8.83 16 7 C 0.12 1.17 5.67 -4.04 -0.02 1.15 16 8 C -0.13 -0.76 5.33 -26.73 -0.14 -0.90 16 9 C -0.15 -0.87 5.67 -26.73 -0.15 -1.02 16 10 C 0.06 0.34 7.55 37.16 0.28 0.62 16 11 F -0.22 -1.96 17.36 2.25 0.04 -1.92 16 12 C 0.06 0.97 11.50 -16.98 -0.20 0.78 16 13 N -0.30 -6.30 12.50 30.86 0.39 -5.92 16 14 N -0.31 -7.07 3.56 -57.77 -0.21 -7.28 16 15 C 0.25 6.23 5.97 -5.19 -0.03 6.19 16 16 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 17 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 20 Si 0.91 20.76 29.54 -169.99 -5.02 15.73 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 25 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 26 H 0.09 1.62 6.50 -51.93 -0.34 1.28 16 27 H 0.40 3.53 7.43 -40.82 -0.30 3.23 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.18 2.06 7.50 -52.49 -0.39 1.67 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -31.69 338.05 -6.42 -38.12 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.54 Total: 1.06 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.65 Total: -1.79 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.58 Total: -45.81 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.69 -6.42 -38.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891081809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.396 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds