Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47293 * 2 1 4 4 N 1.46500 * 109.47111 * 120.01014 * 2 1 3 5 5 C 1.39676 * 119.99636 * 274.99315 * 4 2 1 6 6 C 1.38906 * 120.07135 * 179.97438 * 5 4 2 7 7 C 1.38111 * 119.92343 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.07382 * 0.28047 * 7 6 5 9 9 C 1.50698 * 119.92407 * 179.69843 * 8 7 6 10 10 C 1.50695 * 109.47077 * 90.00107 * 9 8 7 11 11 H 1.08001 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00403 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99758 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00253 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47224 * 59.99893 * 14 12 10 16 16 H 1.48504 * 109.47005 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47172 * 299.99711 * 14 12 10 18 18 C 1.38286 * 120.14755 * 359.44532 * 8 7 6 19 19 C 1.38112 * 120.07587 * 0.55318 * 18 8 7 20 20 C 1.50704 * 109.46718 * 240.00447 * 2 1 3 21 21 C 1.38392 * 120.00154 * 85.00449 * 20 2 1 22 22 N 1.32126 * 120.00054 * 179.97438 * 21 20 2 23 23 C 1.32152 * 119.99707 * 359.97438 * 22 21 20 24 24 C 1.38343 * 120.00289 * 359.97438 * 23 22 21 25 25 N 1.32123 * 120.00276 * 264.72487 * 20 2 1 26 26 H 1.09005 * 109.47269 * 59.98804 * 1 2 3 27 27 H 1.08996 * 109.47541 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46892 * 299.99736 * 1 2 3 29 29 H 0.96995 * 120.00066 * 94.99909 * 4 2 1 30 30 H 1.07999 * 120.03932 * 0.04675 * 6 5 4 31 31 H 1.08002 * 119.96028 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46776 * 210.00059 * 9 8 7 33 33 H 1.09003 * 109.47041 * 330.00009 * 9 8 7 34 34 H 0.96990 * 120.00273 * 179.97438 * 13 12 10 35 35 H 1.08002 * 119.96005 * 180.25011 * 18 8 7 36 36 H 1.07998 * 120.03717 * 179.70130 * 19 18 8 37 37 H 1.08007 * 120.00039 * 359.97438 * 21 20 2 38 38 H 1.08003 * 119.99521 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.99609 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1519 0.0059 2.3993 6 6 2.6142 -0.6477 3.5344 7 6 2.7446 0.0440 4.7227 8 6 2.4098 1.3843 4.7846 9 6 2.5469 2.1341 6.0846 10 6 3.9267 2.7330 6.1760 11 1 4.6336 2.5858 5.3728 12 6 4.2865 3.4698 7.2844 13 7 3.4253 3.6504 8.2618 14 14 5.9967 4.2128 7.3973 15 1 6.2065 5.1469 6.2621 16 1 6.1314 4.9526 8.6779 17 1 7.0114 3.1301 7.3415 18 6 1.9546 2.0394 3.6550 19 6 1.8219 1.3537 2.4635 20 6 2.0323 -0.7103 -1.2306 21 6 2.1645 -0.0199 -2.4226 22 7 2.6053 -0.6426 -3.5014 23 6 2.9204 -1.9246 -3.4418 24 6 2.7893 -2.6146 -2.2499 25 7 2.3516 -1.9910 -1.1701 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2490 -1.6319 1.1523 30 1 2.8718 -1.6955 3.4877 31 1 3.1036 -0.4637 5.6057 32 1 1.8023 2.9291 6.1257 33 1 2.3926 1.4483 6.9176 34 1 3.6784 4.1684 9.0418 35 1 1.6979 3.0872 3.7058 36 1 1.4618 1.8647 1.5829 37 1 1.9073 1.0280 -2.4712 38 1 3.2811 -2.4334 -4.3235 39 1 3.0464 -3.6623 -2.2015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000903297625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = 69.508534 kcal Electronic energy + Delta-G solvation = -20590.778418 eV Core-core repulsion = 17498.008333 eV Total energy + Delta-G solvation = -3092.770085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51599 -38.96812 -36.58916 -34.43374 -33.40664 -32.30216 -30.57285 -30.07627 -29.15178 -26.23470 -25.29817 -24.73757 -22.94224 -22.50685 -21.12092 -19.87329 -18.04693 -17.53685 -17.02606 -16.24833 -16.06136 -15.35665 -15.26938 -14.76734 -14.32355 -14.00596 -13.88913 -13.46129 -13.26305 -12.86646 -12.62367 -12.47759 -12.21935 -11.97360 -11.92318 -11.58102 -11.46396 -11.20838 -11.16063 -10.61168 -10.51569 -10.06118 -9.89084 -9.60160 -9.47505 -9.36416 -8.99196 -8.34874 -8.20130 -6.73797 -5.95133 -3.99658 0.37086 0.75625 2.15641 2.39630 3.28447 3.36164 3.39925 3.43554 3.49120 3.60467 3.90793 4.20782 4.35183 4.46237 4.69472 4.78129 4.88522 5.03037 5.05978 5.08315 5.37337 5.42882 5.54548 5.60412 5.66061 5.91271 6.03679 6.08735 6.17975 6.36054 6.46944 6.75269 6.85486 6.91218 7.33443 7.34370 7.36708 7.48432 7.64657 7.90383 8.00288 8.01367 8.13039 8.43842 9.06075 9.63647 11.13185 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.003000 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.243670 B = 9330.296713 C = 9603.718327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.208 3.792 3 H 0.098 0.902 4 N -0.745 5.745 5 C 0.183 3.817 6 C -0.191 4.191 7 C -0.079 4.079 8 C -0.084 4.084 9 C 0.053 3.947 10 C -0.509 4.509 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.080 4.080 19 C -0.199 4.199 20 C 0.082 3.918 21 C 0.058 3.942 22 N -0.434 5.434 23 C 0.040 3.960 24 C 0.056 3.944 25 N -0.432 5.432 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.403 0.597 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.261 0.739 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -11.002 -21.907 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.100 3.900 3 H 0.115 0.885 4 N -0.379 5.379 5 C 0.084 3.916 6 C -0.214 4.214 7 C -0.097 4.097 8 C -0.086 4.086 9 C 0.017 3.983 10 C -0.547 4.547 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.099 4.099 19 C -0.221 4.221 20 C -0.059 4.059 21 C -0.103 4.103 22 N -0.148 5.148 23 C -0.119 4.119 24 C -0.104 4.104 25 N -0.148 5.148 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.240 0.760 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.127 0.873 37 H 0.189 0.811 38 H 0.187 0.813 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.770 -10.790 -21.859 24.839 hybrid contribution 1.138 -0.015 -0.001 1.138 sum -3.632 -10.805 -21.861 24.654 Atomic orbital electron populations 1.22299 0.94305 1.02852 1.02862 1.19559 0.93927 0.95587 0.80927 0.88476 1.44329 1.75130 1.12448 1.05946 1.17595 0.96969 0.91521 0.85512 1.20457 1.08893 0.99343 0.92663 1.20836 0.98002 0.94408 0.96499 1.20458 0.96806 0.93609 0.97718 1.18238 0.97162 0.94557 0.88393 1.21103 0.98058 1.31898 1.03638 0.92630 1.25017 0.97228 0.96423 0.95763 1.69949 1.34800 1.40700 1.08131 0.86635 0.84732 0.79341 0.77181 1.20241 1.21316 1.20245 1.20840 0.98084 0.99133 0.91794 1.20525 1.10103 0.92943 0.98544 1.22506 0.95438 0.91311 0.96639 1.23553 0.96312 1.01726 0.88694 1.68480 1.07170 1.09563 1.29612 1.23785 0.97495 0.91293 0.99363 1.23799 0.95676 1.01698 0.89212 1.68094 1.07640 1.08839 1.30201 0.91960 0.92173 0.90556 0.76033 0.87418 0.86602 0.95697 0.95715 0.92915 0.86632 0.87280 0.81131 0.81309 0.81199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.41 37.16 0.35 -1.18 16 2 C 0.21 2.18 2.53 -69.08 -0.17 2.01 16 3 H 0.10 0.98 6.46 -51.93 -0.34 0.65 16 4 N -0.74 -9.69 5.22 -53.29 -0.28 -9.97 16 5 C 0.18 2.95 6.64 -83.79 -0.56 2.39 16 6 C -0.19 -3.31 9.90 -39.38 -0.39 -3.70 16 7 C -0.08 -1.58 9.69 -39.61 -0.38 -1.96 16 8 C -0.08 -1.87 5.07 -104.59 -0.53 -2.40 16 9 C 0.05 1.40 5.10 -29.04 -0.15 1.25 16 10 C -0.51 -14.51 9.09 -34.44 -0.31 -14.83 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C -0.08 -1.57 9.69 -39.61 -0.38 -1.96 16 19 C -0.20 -3.30 8.85 -39.38 -0.35 -3.65 16 20 C 0.08 0.82 5.89 -82.41 -0.49 0.34 16 21 C 0.06 0.52 10.90 -17.37 -0.19 0.33 16 22 N -0.43 -4.13 10.50 -13.05 -0.14 -4.27 16 23 C 0.04 0.30 11.22 -17.38 -0.20 0.10 16 24 C 0.06 0.43 11.22 -17.37 -0.20 0.23 16 25 N -0.43 -4.42 9.21 -9.29 -0.09 -4.51 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 29 H 0.40 5.16 7.66 -40.82 -0.31 4.84 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 32 H 0.02 0.68 8.09 -51.93 -0.42 0.26 16 33 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.11 1.50 6.12 -52.49 -0.32 1.18 16 37 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.17 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -32.54 334.54 -8.92 -41.46 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.13 Total: 3.03 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -4.04 Total: -21.50 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.24 Total: -44.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.54 -8.92 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.969 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds