Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47293 * 2 1 4 4 N 1.46500 * 109.47111 * 120.01014 * 2 1 3 5 5 C 1.39676 * 119.99636 * 274.99315 * 4 2 1 6 6 C 1.38906 * 120.07135 * 179.97438 * 5 4 2 7 7 C 1.38111 * 119.92343 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.07382 * 0.28047 * 7 6 5 9 9 C 1.50698 * 119.92407 * 179.69843 * 8 7 6 10 10 C 1.50695 * 109.47077 * 90.00107 * 9 8 7 11 11 H 1.08001 * 119.99903 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00403 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99758 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00253 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47224 * 59.99893 * 14 12 10 16 16 H 1.48504 * 109.47005 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47172 * 299.99711 * 14 12 10 18 18 C 1.38286 * 120.14755 * 359.44532 * 8 7 6 19 19 C 1.38112 * 120.07587 * 0.55318 * 18 8 7 20 20 C 1.50704 * 109.46718 * 240.00447 * 2 1 3 21 21 C 1.38392 * 120.00154 * 85.00449 * 20 2 1 22 22 N 1.32126 * 120.00054 * 179.97438 * 21 20 2 23 23 C 1.32152 * 119.99707 * 359.97438 * 22 21 20 24 24 C 1.38343 * 120.00289 * 359.97438 * 23 22 21 25 25 N 1.32123 * 120.00276 * 264.72487 * 20 2 1 26 26 H 1.09005 * 109.47269 * 59.98804 * 1 2 3 27 27 H 1.08996 * 109.47541 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46892 * 299.99736 * 1 2 3 29 29 H 0.96995 * 120.00066 * 94.99909 * 4 2 1 30 30 H 1.07999 * 120.03932 * 0.04675 * 6 5 4 31 31 H 1.08002 * 119.96028 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.46776 * 210.00059 * 9 8 7 33 33 H 1.09003 * 109.47041 * 330.00009 * 9 8 7 34 34 H 0.96990 * 120.00273 * 179.97438 * 13 12 10 35 35 H 1.08002 * 119.96005 * 180.25011 * 18 8 7 36 36 H 1.07998 * 120.03717 * 179.70130 * 19 18 8 37 37 H 1.08007 * 120.00039 * 359.97438 * 21 20 2 38 38 H 1.08003 * 119.99521 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.99609 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1519 0.0059 2.3993 6 6 2.6142 -0.6477 3.5344 7 6 2.7446 0.0440 4.7227 8 6 2.4098 1.3843 4.7846 9 6 2.5469 2.1341 6.0846 10 6 3.9267 2.7330 6.1760 11 1 4.6336 2.5858 5.3728 12 6 4.2865 3.4698 7.2844 13 7 3.4253 3.6504 8.2618 14 14 5.9967 4.2128 7.3973 15 1 6.2065 5.1469 6.2621 16 1 6.1314 4.9526 8.6779 17 1 7.0114 3.1301 7.3415 18 6 1.9546 2.0394 3.6550 19 6 1.8219 1.3537 2.4635 20 6 2.0323 -0.7103 -1.2306 21 6 2.1645 -0.0199 -2.4226 22 7 2.6053 -0.6426 -3.5014 23 6 2.9204 -1.9246 -3.4418 24 6 2.7893 -2.6146 -2.2499 25 7 2.3516 -1.9910 -1.1701 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2490 -1.6319 1.1523 30 1 2.8718 -1.6955 3.4877 31 1 3.1036 -0.4637 5.6057 32 1 1.8023 2.9291 6.1257 33 1 2.3926 1.4483 6.9176 34 1 3.6784 4.1684 9.0418 35 1 1.6979 3.0872 3.7058 36 1 1.4618 1.8647 1.5829 37 1 1.9073 1.0280 -2.4712 38 1 3.2811 -2.4334 -4.3235 39 1 3.0464 -3.6623 -2.2015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903297625.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = 49.371415 kcal Electronic energy + Delta-G solvation = -20591.651629 eV Core-core repulsion = 17498.008333 eV Total energy + Delta-G solvation = -3093.643296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.15082 -40.31577 -37.69751 -35.44453 -34.92308 -33.64822 -31.74858 -31.55326 -30.34242 -27.89293 -26.01862 -25.54424 -24.61652 -23.82714 -22.30651 -21.27169 -18.86724 -18.45702 -18.31807 -17.75811 -17.11309 -16.66243 -16.24190 -15.97872 -15.69365 -15.13307 -14.96814 -14.62211 -14.37102 -14.26091 -14.07058 -13.80097 -13.45472 -13.21400 -13.08442 -12.88302 -12.61564 -12.51395 -12.38186 -12.33013 -12.19486 -11.63949 -11.57632 -11.33572 -10.69766 -10.56512 -10.21061 -10.05414 -9.65914 -8.29300 -7.94742 -6.28812 -0.22385 0.13032 0.69562 0.90780 1.40323 1.43322 1.51596 2.42410 2.45427 2.71837 2.95114 3.13933 3.18231 3.36795 3.59113 3.72848 4.07780 4.20327 4.23727 4.27806 4.34609 4.41080 4.53454 4.57095 4.66074 4.79519 4.83733 4.86332 5.08386 5.20912 5.26444 5.39434 5.41112 5.42176 5.57583 5.72075 5.83081 6.04196 6.24462 6.25886 6.29629 6.59121 6.78151 6.84572 6.97496 7.39387 8.93166 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.003000 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.243670 B = 9330.296713 C = 9603.718327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.205 3.795 3 H 0.105 0.895 4 N -0.735 5.735 5 C 0.201 3.799 6 C -0.193 4.193 7 C -0.089 4.089 8 C -0.123 4.123 9 C 0.064 3.936 10 C -0.526 4.526 11 H 0.052 0.948 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.964 3.036 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.269 1.269 18 C -0.087 4.087 19 C -0.192 4.192 20 C 0.067 3.933 21 C 0.053 3.947 22 N -0.458 5.458 23 C 0.044 3.956 24 C 0.053 3.947 25 N -0.457 5.457 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.407 0.593 30 H 0.132 0.868 31 H 0.108 0.892 32 H -0.001 1.001 33 H -0.004 1.004 34 H 0.265 0.735 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.191 0.809 38 H 0.202 0.798 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 -11.854 -24.964 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.098 3.902 3 H 0.122 0.878 4 N -0.367 5.367 5 C 0.099 3.901 6 C -0.215 4.215 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.027 3.973 10 C -0.564 4.564 11 H 0.071 0.929 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.789 3.211 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.106 4.106 19 C -0.214 4.214 20 C -0.073 4.073 21 C -0.106 4.106 22 N -0.172 5.172 23 C -0.115 4.115 24 C -0.107 4.107 25 N -0.173 5.173 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.243 0.757 30 H 0.150 0.850 31 H 0.126 0.874 32 H 0.017 0.983 33 H 0.014 0.986 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.160 0.840 37 H 0.208 0.792 38 H 0.218 0.782 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.947 -11.650 -24.956 27.823 hybrid contribution 0.830 0.105 0.771 1.138 sum -3.117 -11.545 -24.185 26.980 Atomic orbital electron populations 1.22232 0.93331 1.02575 1.03539 1.19733 0.94601 0.95766 0.80114 0.87753 1.44430 1.74012 1.12594 1.05673 1.17659 0.94799 0.91408 0.86250 1.20620 1.08566 1.00378 0.91947 1.20803 0.98562 0.93781 0.97619 1.20135 1.01014 0.94627 0.96687 1.17973 0.95679 0.93499 0.90177 1.21434 0.99025 1.32239 1.03743 0.92940 1.25947 1.01612 0.96773 0.95250 1.70081 1.37003 1.41443 1.08748 0.85515 0.79392 0.78651 0.77585 1.19223 1.20542 1.19402 1.20855 0.98253 0.99228 0.92260 1.20722 1.09181 0.93164 0.98346 1.22371 0.96766 0.91608 0.96596 1.23827 0.95943 1.02620 0.88249 1.68541 1.08024 1.10718 1.29917 1.24357 0.95982 0.90727 1.00443 1.24325 0.94765 1.02974 0.88627 1.68049 1.08422 1.09148 1.31643 0.89628 0.92924 0.91518 0.75665 0.85018 0.87360 0.98305 0.98559 0.92665 0.86953 0.83988 0.79247 0.78156 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.41 71.98 0.68 -1.87 16 2 C 0.20 3.75 2.53 44.25 0.11 3.86 16 3 H 0.10 1.77 6.46 -2.39 -0.02 1.76 16 4 N -0.74 -17.32 5.22 -322.50 -1.68 -19.00 16 5 C 0.20 6.08 6.64 38.21 0.25 6.33 16 6 C -0.19 -6.47 9.90 22.40 0.22 -6.25 16 7 C -0.09 -3.65 9.69 22.25 0.22 -3.44 16 8 C -0.12 -5.67 5.07 -19.84 -0.10 -5.77 16 9 C 0.06 3.56 5.10 29.10 0.15 3.71 16 10 C -0.53 -31.15 9.09 25.60 0.23 -30.92 16 11 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 14 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 18 C -0.09 -3.48 9.69 22.25 0.22 -3.26 16 19 C -0.19 -6.07 8.85 22.40 0.20 -5.88 16 20 C 0.07 1.17 5.89 42.55 0.25 1.42 16 21 C 0.05 0.82 10.90 84.69 0.92 1.74 16 22 N -0.46 -7.52 10.50 -195.21 -2.05 -9.57 16 23 C 0.04 0.52 11.22 84.67 0.95 1.47 16 24 C 0.05 0.65 11.22 84.67 0.95 1.60 16 25 N -0.46 -8.21 9.21 -183.29 -1.69 -9.89 16 26 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.22 7.71 -2.39 -0.02 1.20 16 29 H 0.41 9.38 7.66 -92.71 -0.71 8.67 16 30 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.00 -0.08 8.09 -2.39 -0.02 -0.10 16 33 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 34 H 0.26 15.34 8.31 -92.72 -0.77 14.57 16 35 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 36 H 0.14 3.50 6.12 -2.91 -0.02 3.48 16 37 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 39 H 0.20 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -72.53 334.54 2.95 -69.58 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.35 Total: 15.57 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 5.71 Total: -36.67 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -5.14 Total: -95.89 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.53 2.95 -69.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903297625.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.948 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds