Wall clock time and date at job start Tue Mar 31 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 120.00228 * 2 1 4 4 H 1.48504 * 109.47338 * 270.00235 * 3 2 1 5 5 H 1.48501 * 109.47038 * 29.99955 * 3 2 1 6 6 H 1.48498 * 109.47290 * 150.00123 * 3 2 1 7 7 C 1.37880 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47262 * 179.97438 * 10 9 7 12 12 O 1.45198 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.34237 * 116.99991 * 180.02562 * 12 11 10 14 14 O 1.20827 * 119.99749 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99997 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47055 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 13 18 18 N 1.46496 * 109.46995 * 180.02562 * 17 16 15 19 19 C 1.34775 * 119.99642 * 180.02562 * 18 17 16 20 20 O 1.21279 * 120.00300 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99773 * 180.02562 * 19 18 17 22 22 C 1.53001 * 117.49924 * 248.61926 * 21 19 18 23 23 C 1.52997 * 60.00080 * 252.51036 * 22 21 19 24 24 H 0.96991 * 119.99589 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47034 * 59.99935 * 9 7 2 26 26 H 1.08995 * 109.46952 * 299.99791 * 9 7 2 27 27 H 1.09003 * 109.46859 * 59.99606 * 10 9 7 28 28 H 1.09003 * 109.47093 * 300.00254 * 10 9 7 29 29 H 1.09003 * 109.47398 * 60.00067 * 11 10 9 30 30 H 1.09003 * 109.47381 * 300.00209 * 11 10 9 31 31 H 1.09001 * 109.47324 * 59.99401 * 15 13 12 32 32 H 1.09004 * 109.47043 * 299.99769 * 15 13 12 33 33 H 1.09001 * 109.46832 * 59.99966 * 16 15 13 34 34 H 1.08993 * 109.47194 * 299.99487 * 16 15 13 35 35 H 1.09001 * 109.46801 * 300.00272 * 17 16 15 36 36 H 1.09001 * 109.46998 * 59.99868 * 17 16 15 37 37 H 0.96998 * 120.00192 * 359.97438 * 18 17 16 38 38 H 1.09006 * 115.55393 * 34.32883 * 21 19 18 39 39 H 1.08997 * 117.49878 * 0.02562 * 22 21 19 40 40 H 1.09002 * 117.50200 * 145.02129 * 22 21 19 41 41 H 1.09000 * 117.50332 * 252.50780 * 23 22 21 42 42 H 1.09000 * 117.51934 * 107.48216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0216 -2.6367 -0.0010 11 6 5.5515 -2.6367 -0.0022 12 8 6.0355 -4.0057 -0.0027 13 6 7.3663 -4.1816 -0.0033 14 8 8.1023 -3.2234 -0.0038 15 6 7.9422 -5.5742 -0.0044 16 6 9.4701 -5.4941 -0.0055 17 6 10.0549 -6.9080 -0.0060 18 7 11.5178 -6.8313 -0.0064 19 6 12.2518 -7.9617 -0.0074 20 8 11.7012 -9.0423 -0.0075 21 6 13.7568 -7.8828 -0.0073 22 6 14.4882 -8.3388 -1.2714 23 6 14.5333 -9.2012 -0.0084 24 1 -0.4849 0.8400 0.0004 25 1 3.8753 -0.6805 0.8889 26 1 3.8745 -0.6802 -0.8911 27 1 3.6578 -3.1507 -0.8907 28 1 3.6586 -3.1503 0.8892 29 1 5.9156 -2.1226 0.8873 30 1 5.9142 -2.1232 -0.8927 31 1 7.6059 -6.1058 -0.8946 32 1 7.6066 -6.1069 0.8854 33 1 9.8067 -4.9624 0.8845 34 1 9.8054 -4.9616 -0.8954 35 1 9.7195 -7.4402 0.8842 36 1 9.7183 -7.4401 -0.8958 37 1 11.9582 -5.9671 -0.0067 38 1 14.1838 -7.0477 0.5481 39 1 13.8809 -8.6954 -2.1033 40 1 15.3966 -7.8036 -1.5481 41 1 15.4712 -9.2333 0.5459 42 1 13.9556 -10.1255 -0.0088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915424386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:55 Heat of formation + Delta-G solvation = -148.800443 kcal Electronic energy + Delta-G solvation = -20615.482969 eV Core-core repulsion = 17173.644626 eV Total energy + Delta-G solvation = -3441.838343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52613 -40.95048 -38.09255 -37.36389 -36.44902 -35.93145 -34.01268 -33.69990 -29.79364 -28.53238 -25.56891 -24.58177 -23.31594 -22.98321 -22.09690 -21.70510 -20.84069 -19.03115 -18.69189 -18.34316 -17.90301 -17.50585 -16.78939 -16.64303 -16.26831 -16.09928 -15.69544 -15.21626 -14.93912 -14.82338 -14.31730 -14.02532 -13.77947 -13.53908 -13.35085 -13.31799 -12.84111 -12.65385 -12.48698 -12.44259 -12.11825 -12.01872 -11.94742 -11.76672 -11.54945 -11.47763 -11.43213 -11.38158 -11.35214 -10.95753 -10.78369 -10.13806 -8.31066 -6.36349 1.18865 1.36236 1.37865 1.45412 1.49570 1.62816 2.20185 2.34983 2.92519 3.04071 3.53813 3.71860 3.86238 3.93437 3.94576 3.98575 4.00834 4.03326 4.15328 4.25317 4.38794 4.48248 4.56607 4.69900 4.73608 4.74645 4.78453 4.92227 4.95263 5.03395 5.05069 5.15698 5.22321 5.34748 5.41452 5.47990 5.55237 5.62616 6.24809 6.50640 6.69754 6.73933 7.20402 7.28299 8.85507 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.062699 B = 0.001843 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.467570 B =15192.385146 C =15524.489857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.035 0.965 9 C -0.009 4.009 10 C -0.094 4.094 11 C 0.075 3.925 12 O -0.363 6.363 13 C 0.456 3.544 14 O -0.542 6.542 15 C -0.106 4.106 16 C -0.109 4.109 17 C 0.122 3.878 18 N -0.716 5.716 19 C 0.534 3.466 20 O -0.589 6.589 21 C -0.201 4.201 22 C -0.143 4.143 23 C -0.156 4.156 24 H 0.267 0.733 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.152 0.848 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.934 -14.392 -0.534 35.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.574 4.574 8 H 0.053 0.947 9 C -0.047 4.047 10 C -0.132 4.132 11 C 0.001 3.999 12 O -0.279 6.279 13 C 0.302 3.698 14 O -0.433 6.433 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.002 4.002 18 N -0.368 5.368 19 C 0.322 3.678 20 O -0.470 6.470 21 C -0.221 4.221 22 C -0.181 4.181 23 C -0.193 4.193 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.254 0.746 38 H 0.169 0.831 39 H 0.105 0.895 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 31.553 -14.724 -0.530 34.823 hybrid contribution -0.439 1.328 0.031 1.399 sum 31.114 -13.396 -0.499 33.879 Atomic orbital electron populations 1.70065 1.08306 1.28268 1.52332 1.26016 0.95641 1.03552 0.93973 0.85651 0.79525 0.78146 0.79305 1.19063 1.20878 1.16910 1.21426 0.91792 0.93368 1.50851 0.94692 1.19450 0.94249 0.93805 0.97188 1.21327 0.91012 0.98302 1.02530 1.23140 0.94987 0.79299 1.02427 1.86501 1.25018 1.32979 1.83437 1.24475 0.80251 0.93922 0.71200 1.90648 1.60898 1.44701 1.47032 1.21383 0.95452 0.89061 1.08432 1.21470 0.92709 0.95880 1.04598 1.21285 0.79451 0.96753 1.02700 1.45858 1.07097 1.09327 1.74517 1.20243 0.89524 0.83424 0.74563 1.90688 1.74340 1.30020 1.51930 1.22310 0.89495 1.03206 1.07134 1.23031 1.02122 1.02372 0.90545 1.23008 1.01633 0.93247 1.01413 0.92394 0.95627 0.95722 0.91901 0.91912 0.91216 0.91148 0.85230 0.85222 0.90271 0.90283 0.91272 0.91321 0.74648 0.83053 0.89471 0.85150 0.85670 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 2 C 0.01 0.30 5.47 84.65 0.46 0.77 16 3 Si 0.95 43.81 27.47 68.60 1.88 45.70 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 7 C -0.54 -30.87 9.66 25.60 0.25 -30.62 16 8 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.31 16 10 C -0.09 -3.62 5.53 30.59 0.17 -3.45 16 11 C 0.07 2.42 5.47 71.98 0.39 2.81 16 12 O -0.36 -10.42 10.22 -51.49 -0.53 -10.95 16 13 C 0.46 11.01 7.96 71.23 0.57 11.58 16 14 O -0.54 -16.04 15.73 21.96 0.35 -15.69 16 15 C -0.11 -1.43 5.81 29.85 0.17 -1.26 16 16 C -0.11 -1.29 4.62 30.60 0.14 -1.15 16 17 C 0.12 1.51 5.67 86.38 0.49 2.00 16 18 N -0.72 -8.52 5.56 -463.06 -2.57 -11.09 16 19 C 0.53 8.95 7.61 87.66 0.67 9.61 16 20 O -0.59 -15.25 16.26 -3.03 -0.05 -15.29 16 21 C -0.20 -2.01 6.19 -11.54 -0.07 -2.08 16 22 C -0.14 -1.17 10.23 30.59 0.31 -0.86 16 23 C -0.16 -1.60 10.04 30.59 0.31 -1.29 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 26 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.07 2.21 8.13 -2.39 -0.02 2.19 16 30 H 0.07 2.22 8.13 -2.39 -0.02 2.20 16 31 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.42 2.73 8.47 -92.71 -0.79 1.94 16 38 H 0.15 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 Total: -1.00 -76.60 359.36 3.52 -73.07 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.16 Total: 7.65 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 3.98 Total: -14.25 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: -2.27 Total: -70.24 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.23 Total: -41.93 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -76.60 3.52 -73.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915424386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.727 kcal (2) G-P(sol) polarization free energy of solvation -76.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds