Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.53004 * 109.47166 * 173.94293 * 3 2 1 5 5 C 1.52998 * 109.47359 * 295.42666 * 4 3 2 6 6 C 1.52995 * 109.47427 * 293.94617 * 3 2 1 7 7 N 1.46900 * 109.47712 * 175.25884 * 6 3 2 8 8 C 1.46889 * 111.00421 * 162.82425 * 7 6 3 9 9 C 1.50701 * 109.47395 * 195.28262 * 8 7 6 10 10 H 1.08001 * 119.99859 * 5.07148 * 9 8 7 11 11 C 1.37875 * 120.00394 * 185.07803 * 9 8 7 12 12 N 1.31515 * 119.99785 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00226 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46884 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47407 * 119.99658 * 13 11 9 16 16 H 1.48501 * 109.46997 * 239.99825 * 13 11 9 17 17 C 1.46900 * 110.99611 * 286.77950 * 7 6 3 18 18 C 1.50703 * 109.47195 * 298.66676 * 17 7 6 19 19 N 1.29413 * 125.69492 * 89.95974 * 18 17 7 20 20 N 1.26397 * 116.47566 * 179.75159 * 19 18 17 21 21 C 1.29422 * 116.47264 * 0.53249 * 20 19 18 22 22 S 1.71215 * 125.69606 * 270.00041 * 18 17 7 23 23 H 1.08992 * 109.47087 * 66.03112 * 1 2 3 24 24 H 1.08997 * 109.46856 * 186.03212 * 1 2 3 25 25 H 1.09002 * 109.47032 * 306.02939 * 1 2 3 26 26 H 1.08998 * 109.46954 * 239.99643 * 2 1 3 27 27 H 1.08999 * 109.47087 * 120.00362 * 2 1 3 28 28 H 1.09002 * 109.47112 * 53.94842 * 3 2 1 29 29 H 1.09001 * 109.46760 * 55.42455 * 4 3 2 30 30 H 1.09001 * 109.47194 * 175.42316 * 4 3 2 31 31 H 1.09003 * 109.47102 * 66.09636 * 5 4 3 32 32 H 1.08997 * 109.47376 * 186.09480 * 5 4 3 33 33 H 1.09007 * 109.46674 * 306.09686 * 5 4 3 34 34 H 1.08997 * 109.47095 * 55.25062 * 6 3 2 35 35 H 1.09001 * 109.47108 * 295.25619 * 6 3 2 36 36 H 1.09001 * 109.47587 * 315.28245 * 8 7 6 37 37 H 1.09003 * 109.47360 * 75.28453 * 8 7 6 38 38 H 0.97005 * 119.99756 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.47385 * 178.66767 * 17 7 6 40 40 H 1.09004 * 109.47144 * 58.66539 * 17 7 6 41 41 H 1.07993 * 125.69639 * 179.76673 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5624 1.4452 0.1522 5 6 3.9393 0.8730 1.5202 6 6 1.6580 2.1185 -1.3183 7 7 2.0469 3.5344 -1.2733 8 6 2.0792 4.1146 -2.6224 9 6 2.8273 5.4224 -2.5890 10 1 3.3078 5.7465 -1.6777 11 6 2.8982 6.2052 -3.7218 12 7 2.3134 5.8103 -4.8316 13 14 3.8261 7.8259 -3.6806 14 1 4.3898 8.0391 -2.3233 15 1 4.9284 7.7907 -4.6750 16 1 2.8972 8.9366 -4.0104 17 6 1.1527 4.2981 -0.3930 18 6 -0.2557 4.2284 -0.9248 19 7 -1.1347 3.3292 -0.6188 20 7 -2.2688 3.4408 -1.1657 21 6 -2.4217 4.4357 -1.9792 22 16 -0.9596 5.3249 -2.0355 23 1 -0.3633 0.4174 -0.9390 24 1 -0.3633 -1.0220 0.1080 25 1 -0.3633 0.6045 0.8311 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 1.5909 1.9866 0.8309 29 1 4.0071 0.8332 -0.6326 30 1 3.9339 2.4667 0.0708 31 1 3.6642 -0.1810 1.5615 32 1 5.0137 0.9743 1.6730 33 1 3.4083 1.4180 2.3007 34 1 0.5810 2.0420 -1.4671 35 1 2.1745 1.6259 -2.1422 36 1 2.5813 3.4261 -3.3021 37 1 1.0600 4.2878 -2.9680 38 1 2.3636 6.3609 -5.6287 39 1 1.4772 5.3382 -0.3593 40 1 1.1832 3.8753 0.6112 41 1 -3.3225 4.6688 -2.5273 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929777779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = 49.615346 kcal Electronic energy + Delta-G solvation = -21218.418891 eV Core-core repulsion = 18260.230125 eV Total energy + Delta-G solvation = -2958.188767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81794 -38.10524 -35.50545 -32.68579 -31.41595 -31.13011 -28.37633 -27.88662 -25.87768 -24.71270 -23.11479 -22.20988 -21.20221 -19.87373 -19.15882 -18.45837 -16.48891 -15.80708 -15.48404 -15.12969 -14.59345 -14.29526 -14.13457 -13.72544 -13.48089 -13.36963 -12.79187 -12.74469 -12.31069 -12.22376 -11.69540 -11.52890 -11.38932 -11.14866 -10.96056 -10.90548 -10.76811 -10.65541 -10.20069 -10.15483 -10.02301 -9.92760 -9.83738 -9.77271 -9.40149 -9.28354 -8.98996 -8.51808 -7.48440 -6.11791 -4.14375 0.90675 1.49706 1.96390 3.00191 3.24221 3.33340 3.36918 4.33661 4.53824 4.82728 5.12479 5.14505 5.22568 5.24472 5.41025 5.49429 5.58162 5.67146 5.76216 5.81158 5.87535 6.00714 6.09359 6.11965 6.16955 6.24515 6.30622 6.34776 6.38112 6.49738 6.54510 6.71921 6.83261 6.89463 7.09843 7.16925 7.70553 7.90863 8.01712 8.37930 8.93765 8.98411 9.50824 10.97983 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.007288 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.423808 B = 3840.944676 C = 5447.646127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.076 4.076 4 C -0.114 4.114 5 C -0.150 4.150 6 C 0.048 3.952 7 N -0.509 5.509 8 C 0.179 3.821 9 C -0.510 4.510 10 H 0.065 0.935 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.891 3.109 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.138 3.862 18 C -0.038 4.038 19 N -0.268 5.268 20 N -0.270 5.270 21 C -0.093 4.093 22 S 0.236 5.764 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -4.473 7.691 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.095 4.095 4 C -0.152 4.152 5 C -0.207 4.207 6 C -0.081 4.081 7 N -0.231 5.231 8 C 0.053 3.947 9 C -0.549 4.549 10 H 0.084 0.916 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.719 3.281 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.005 3.995 18 C -0.318 4.318 19 N -0.109 5.109 20 N -0.108 5.108 21 C -0.391 4.391 22 S 0.478 5.522 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.740 -4.680 7.845 9.871 hybrid contribution -0.512 0.765 -0.777 1.205 sum -4.253 -3.914 7.068 9.130 Atomic orbital electron populations 1.21740 0.95699 1.00269 1.02610 1.21587 0.95920 0.96863 1.01227 1.21140 0.95611 0.94757 0.97950 1.21490 0.95361 1.02398 0.95921 1.21826 1.00445 1.00392 0.98081 1.22320 0.99057 0.89507 0.97184 1.62545 1.44738 1.00842 1.15017 1.20040 0.96529 0.95281 0.82804 1.21139 1.33115 1.03353 0.97246 0.91643 1.24943 0.95642 0.98138 0.95415 1.69963 1.43837 1.38140 1.01230 0.86540 0.79747 0.83534 0.78263 1.19561 1.21026 1.21030 1.21101 0.79456 1.01718 0.97199 1.30684 1.04610 0.95405 1.01070 1.71489 0.95913 1.22070 1.21383 1.71398 1.13823 1.18151 1.07472 1.30396 1.05429 0.99164 1.04133 1.84569 1.01787 1.27965 1.37921 0.92636 0.93962 0.92500 0.92676 0.92236 0.91364 0.92886 0.90129 0.93366 0.93441 0.93150 0.93883 0.91772 0.95282 0.97732 0.92909 0.87827 0.89173 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.55 37.16 0.35 -1.70 16 2 C -0.12 -1.59 5.27 -26.73 -0.14 -1.73 16 3 C -0.08 -1.13 1.87 -90.62 -0.17 -1.30 16 4 C -0.11 -1.65 5.35 -26.73 -0.14 -1.79 16 5 C -0.15 -1.82 9.51 37.16 0.35 -1.46 16 6 C 0.05 0.85 4.11 -3.83 -0.02 0.84 16 7 N -0.51 -10.03 3.98 -237.52 -0.94 -10.97 16 8 C 0.18 4.23 4.58 -4.98 -0.02 4.21 16 9 C -0.51 -12.94 8.47 -34.44 -0.29 -13.23 16 10 H 0.07 1.66 7.64 -52.49 -0.40 1.25 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 12 N -0.89 -24.51 13.29 55.43 0.74 -23.77 16 13 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.14 2.47 5.70 -4.97 -0.03 2.44 16 18 C -0.04 -0.69 5.14 -13.30 -0.07 -0.76 16 19 N -0.27 -4.96 10.50 32.58 0.34 -4.62 16 20 N -0.27 -4.87 11.66 29.45 0.34 -4.53 16 21 C -0.09 -1.44 12.39 51.75 0.64 -0.80 16 22 S 0.24 4.04 21.27 -107.50 -2.29 1.75 16 23 H 0.05 0.89 6.79 -51.93 -0.35 0.53 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.73 6.42 -51.93 -0.33 0.39 16 28 H 0.07 1.06 6.63 -51.93 -0.34 0.71 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.32 7.62 -51.93 -0.40 0.92 16 31 H 0.05 0.54 6.73 -51.93 -0.35 0.19 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.04 0.82 4.28 -51.93 -0.22 0.60 16 35 H 0.06 1.21 7.71 -51.93 -0.40 0.81 16 36 H 0.03 0.77 7.73 -51.93 -0.40 0.36 16 37 H 0.01 0.12 5.28 -51.93 -0.27 -0.15 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.10 1.89 7.28 -51.93 -0.38 1.51 16 40 H 0.09 1.46 6.63 -51.93 -0.34 1.12 16 41 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -27.64 334.90 -7.70 -35.35 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.29 Total: 0.33 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 0.37 Total: -13.80 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.48 Total: -43.89 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -2.29 Total: 1.75 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.64 -7.70 -35.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929777779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.961 kcal (2) G-P(sol) polarization free energy of solvation -27.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds