Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 111.00247 * 2 1 4 4 C 1.50704 * 109.47127 * 66.04306 * 3 2 1 5 5 H 1.08000 * 119.99436 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00008 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00007 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99905 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46844 * 90.00370 * 8 6 4 10 10 H 1.48498 * 109.47364 * 209.99715 * 8 6 4 11 11 H 1.48495 * 109.47236 * 330.00069 * 8 6 4 12 12 C 1.46904 * 111.00381 * 236.04739 * 2 1 3 13 13 C 1.50702 * 109.46821 * 293.95195 * 12 2 1 14 14 C 1.38348 * 119.93814 * 90.00010 * 13 12 2 15 15 C 1.38292 * 120.24305 * 179.97438 * 14 13 12 16 16 C 1.38037 * 120.12488 * 0.02562 * 15 14 13 17 17 C 1.39315 * 119.87499 * 359.97438 * 16 15 14 18 18 C 1.48402 * 120.12115 * 179.72171 * 17 16 15 19 19 C 1.39699 * 120.91568 * 179.72316 * 18 17 16 20 20 N 1.32201 * 118.95203 * 179.72401 * 19 18 17 21 21 C 1.31831 * 120.94116 * 0.56360 * 20 19 18 22 22 N 1.31835 * 122.04197 * 359.71281 * 21 20 19 23 23 C 1.32200 * 120.94174 * 359.97438 * 22 21 20 24 24 C 1.37994 * 119.94382 * 270.02447 * 13 12 2 25 25 H 1.09004 * 109.47314 * 183.94975 * 1 2 3 26 26 H 1.08994 * 109.47245 * 303.95896 * 1 2 3 27 27 H 1.09004 * 109.47155 * 63.95389 * 1 2 3 28 28 H 1.08999 * 109.47551 * 186.04420 * 3 2 1 29 29 H 1.09008 * 109.46916 * 306.04427 * 3 2 1 30 30 H 0.97000 * 120.00103 * 180.02562 * 7 6 4 31 31 H 1.08995 * 109.47403 * 173.95468 * 12 2 1 32 32 H 1.08997 * 109.47306 * 53.94802 * 12 2 1 33 33 H 1.08001 * 119.87807 * 359.97438 * 14 13 12 34 34 H 1.08003 * 119.93906 * 180.02562 * 15 14 13 35 35 H 1.08000 * 120.06785 * 179.97438 * 16 15 14 36 36 H 1.08001 * 120.52847 * 0.02562 * 19 18 17 37 37 H 1.07997 * 118.97973 * 179.68164 * 21 20 19 38 38 H 1.07991 * 120.52148 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.06087 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5112 2.0487 6 6 2.0267 3.3495 1.5285 7 7 2.7111 4.0022 0.6146 8 14 1.5817 4.1873 3.1376 9 1 2.6583 3.9513 4.1329 10 1 1.4292 5.6468 2.9102 11 1 0.3039 3.6299 3.6491 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 0.4499 -2.7024 -1.4949 15 6 0.1149 -4.0360 -1.3478 16 6 0.9641 -4.8938 -0.6781 17 6 2.1608 -4.4139 -0.1504 18 6 3.0748 -5.3300 0.5760 19 6 4.2815 -4.8677 1.1069 20 7 5.0638 -5.7163 1.7516 21 6 4.7241 -6.9829 1.8865 22 7 3.5977 -7.4610 1.3962 23 6 2.7549 -6.6796 0.7429 24 6 2.4931 -3.0690 -0.3011 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5740 0.8523 27 1 -0.3634 0.4513 -0.9233 28 1 3.0797 1.3444 -0.1082 29 1 1.5611 1.9274 -0.8310 30 1 2.9857 4.9183 0.7765 31 1 3.0797 -0.6611 -1.1756 32 1 1.5611 -0.3873 -2.0628 33 1 -0.2176 -2.0346 -2.0193 34 1 -0.8128 -4.4071 -1.7577 35 1 0.7014 -5.9351 -0.5634 36 1 4.5685 -3.8324 0.9967 37 1 5.3895 -7.6497 2.4148 38 1 1.8342 -7.0785 0.3436 39 1 3.4192 -2.6916 0.1069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137763364.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = 76.769839 kcal Electronic energy + Delta-G solvation = -20783.096418 eV Core-core repulsion = 17690.641207 eV Total energy + Delta-G solvation = -3092.455211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21162 -39.33055 -36.51299 -33.96571 -33.67791 -32.63723 -31.31691 -29.54778 -27.27363 -26.76811 -25.00199 -24.74820 -23.69068 -21.88584 -21.08342 -20.08498 -18.11750 -17.47342 -16.66909 -16.26493 -15.65676 -15.11818 -15.02024 -14.90688 -14.28940 -14.01621 -13.96212 -13.77073 -13.61967 -13.33990 -12.68908 -12.41113 -11.97113 -11.77507 -11.56362 -11.18209 -11.05932 -11.03721 -10.96297 -10.79232 -10.65177 -10.49721 -10.28918 -9.89969 -9.41575 -9.27462 -8.76204 -8.46765 -8.31403 -7.31245 -6.05974 -4.07414 0.25433 0.87208 1.41255 1.68452 3.30617 3.36654 3.40049 3.51261 3.90421 3.92104 4.00455 4.28246 4.40726 4.41991 4.55473 4.86022 5.01339 5.07719 5.18818 5.21522 5.30688 5.38739 5.43771 5.60462 5.73268 5.90019 6.03674 6.09330 6.15330 6.18552 6.28493 6.41266 6.43126 6.68000 6.71324 6.78395 6.96446 7.22220 7.28084 7.75416 7.85909 8.02245 8.13560 8.48780 9.00121 9.57038 11.04888 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.003645 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.597038 B = 7680.699290 C = 8669.225073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.086 3.914 13 C -0.055 4.055 14 C -0.104 4.104 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.053 4.053 18 C -0.134 4.134 19 C 0.155 3.845 20 N -0.513 5.513 21 C 0.280 3.720 22 N -0.518 5.518 23 C 0.149 3.851 24 C -0.083 4.083 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.010 0.990 28 H 0.030 0.970 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.174 0.826 37 H 0.195 0.805 38 H 0.168 0.832 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -19.613 -3.932 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.042 4.042 13 C -0.056 4.056 14 C -0.122 4.122 15 C -0.137 4.137 16 C -0.132 4.132 17 C -0.054 4.054 18 C -0.138 4.138 19 C -0.011 4.011 20 N -0.226 5.226 21 C -0.007 4.007 22 N -0.231 5.231 23 C -0.017 4.017 24 C -0.101 4.101 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.049 0.951 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.190 0.810 37 H 0.212 0.788 38 H 0.185 0.815 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.774 -20.272 -3.024 20.511 hybrid contribution -1.059 1.580 -0.326 1.930 sum -1.833 -18.692 -3.350 19.078 Atomic orbital electron populations 1.22286 0.88851 0.99757 1.00514 1.62161 1.07138 1.17725 1.38824 1.19766 0.95415 0.81277 0.96779 1.21145 1.34929 0.96895 1.01642 0.91848 1.24982 0.95282 0.97320 0.96991 1.69953 1.38384 1.11505 1.33995 0.86497 0.78901 0.78427 0.83589 1.20580 1.21307 1.19860 1.21093 1.00658 0.88939 0.93508 1.19932 0.93852 0.95955 0.95811 1.21230 0.96277 0.95390 0.99327 1.20992 0.99496 0.93549 0.99645 1.21041 0.93763 0.99562 0.98839 1.18371 0.94440 0.92828 0.99809 1.20603 0.96912 0.95701 1.00577 1.23508 0.88613 1.00090 0.88894 1.68427 1.34015 1.04618 1.15546 1.24989 0.91663 0.90319 0.93685 1.68386 1.04653 1.39649 1.10400 1.23335 0.97725 0.89155 0.91512 1.21074 1.00046 0.91538 0.97477 0.93348 0.90702 0.97104 0.95143 0.99035 0.92888 0.90324 0.94764 0.86029 0.85891 0.86131 0.80951 0.78825 0.81452 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.95 60.06 0.54 1.19 16 2 N -0.53 -11.14 4.74 -245.82 -1.17 -12.30 16 3 C 0.19 4.89 4.72 -4.97 -0.02 4.86 16 4 C -0.51 -14.05 8.46 -34.44 -0.29 -14.35 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.09 1.46 5.12 -4.97 -0.03 1.43 16 13 C -0.05 -0.79 4.88 -104.67 -0.51 -1.30 16 14 C -0.10 -1.30 7.96 -39.52 -0.31 -1.61 16 15 C -0.12 -1.25 10.03 -39.64 -0.40 -1.65 16 16 C -0.11 -1.18 9.45 -39.25 -0.37 -1.55 16 17 C -0.05 -0.62 5.88 -104.90 -0.62 -1.24 16 18 C -0.13 -1.50 5.91 -104.62 -0.62 -2.12 16 19 C 0.16 1.82 10.70 -16.85 -0.18 1.63 16 20 N -0.51 -6.22 10.42 -14.31 -0.15 -6.37 16 21 C 0.28 2.98 12.27 -92.09 -1.13 1.85 16 22 N -0.52 -5.77 10.42 -14.31 -0.15 -5.92 16 23 C 0.15 1.53 10.70 -16.85 -0.18 1.35 16 24 C -0.08 -1.10 9.10 -39.26 -0.36 -1.46 16 25 H 0.05 0.80 6.16 -51.93 -0.32 0.48 16 26 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 29 H -0.01 -0.22 8.12 -51.92 -0.42 -0.64 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.08 1.31 7.87 -51.93 -0.41 0.91 16 32 H 0.03 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.12 1.42 8.03 -52.49 -0.42 1.00 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.12 0.91 6.30 -52.49 -0.33 0.58 16 36 H 0.17 1.80 6.35 -52.49 -0.33 1.47 16 37 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.17 1.26 6.35 -52.49 -0.33 0.92 16 39 H 0.13 1.61 6.30 -52.48 -0.33 1.28 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -31.37 327.24 -10.25 -41.63 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.86 Total: -1.28 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -4.58 Total: -11.49 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -0.73 Total: -50.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.37 -10.25 -41.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137763364.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.395 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds