Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47171 * 2 1 4 4 N 1.46897 * 109.47289 * 183.14061 * 3 2 1 5 5 C 1.46899 * 111.00259 * 196.15583 * 4 3 2 6 6 C 1.50705 * 109.47043 * 66.04610 * 5 4 3 7 7 H 1.07995 * 119.99864 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99507 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00403 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99600 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47146 * 59.99875 * 10 8 6 12 12 H 1.48499 * 109.46911 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47223 * 299.99736 * 10 8 6 14 14 C 1.46900 * 111.00145 * 72.19627 * 4 3 2 15 15 C 1.50697 * 109.47169 * 189.04335 * 14 4 3 16 16 C 1.38260 * 120.00201 * 257.11443 * 15 14 4 17 17 C 1.38219 * 119.99664 * 179.74691 * 16 15 14 18 18 C 1.38252 * 120.00077 * 0.55163 * 17 16 15 19 19 C 1.38210 * 120.00309 * 359.70182 * 18 17 16 20 20 C 1.38215 * 120.00189 * 77.39142 * 15 14 4 21 21 C 1.50701 * 119.99661 * 359.97438 * 20 15 14 22 22 F 1.39900 * 109.47465 * 298.07867 * 21 20 15 23 23 F 1.39908 * 109.46915 * 58.07734 * 21 20 15 24 24 H 1.08994 * 109.47401 * 175.14853 * 1 2 3 25 25 H 1.08999 * 109.46766 * 295.14751 * 1 2 3 26 26 H 1.09002 * 109.47428 * 55.14377 * 1 2 3 27 27 H 1.08997 * 109.46645 * 240.00300 * 2 1 3 28 28 H 1.08997 * 109.47029 * 120.00324 * 2 1 3 29 29 H 1.08998 * 109.47302 * 63.14136 * 3 2 1 30 30 H 1.09003 * 109.47402 * 303.14196 * 3 2 1 31 31 H 1.09003 * 109.47012 * 186.04076 * 5 4 3 32 32 H 1.09000 * 109.46758 * 306.04251 * 5 4 3 33 33 H 0.97002 * 119.99902 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47102 * 309.04467 * 14 4 3 35 35 H 1.09000 * 109.46731 * 69.04953 * 14 4 3 36 36 H 1.07998 * 120.00106 * 359.97438 * 16 15 14 37 37 H 1.07997 * 119.99331 * 180.27436 * 17 16 15 38 38 H 1.07998 * 119.99653 * 179.73051 * 18 17 16 39 39 H 1.08002 * 120.00516 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.47255 * 178.07641 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5070 1.4432 -0.0759 5 6 4.0531 2.7535 0.3020 6 6 3.7694 3.0148 1.7589 7 1 3.2363 2.2811 2.3452 8 6 4.1894 4.1910 2.3427 9 7 4.8382 5.0847 1.6286 10 14 3.8371 4.5153 4.1484 11 1 4.4728 3.4576 4.9745 12 1 4.3893 5.8398 4.5303 13 1 2.3696 4.5059 4.3758 14 6 3.9652 1.0480 -1.4145 15 6 5.4582 0.8447 -1.3947 16 6 6.2946 1.8108 -1.9228 17 6 7.6642 1.6265 -1.8999 18 6 8.1974 0.4712 -1.3593 19 6 7.3611 -0.4969 -0.8361 20 6 5.9914 -0.3101 -0.8539 21 6 5.0795 -1.3656 -0.2834 22 9 4.3607 -0.8300 0.7907 23 9 4.1885 -1.7962 -1.2724 24 1 -0.3634 -1.0239 -0.0869 25 1 -0.3633 0.4367 0.9303 26 1 -0.3634 0.5873 -0.8433 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.7234 1.9398 0.9168 30 1 1.6314 1.9724 -0.8605 31 1 5.1302 2.7601 0.1348 32 1 3.5865 3.5300 -0.3041 33 1 5.1340 5.9121 2.0395 34 1 3.4758 0.1189 -1.7064 35 1 3.7146 1.8312 -2.1301 36 1 5.8778 2.7109 -2.3499 37 1 8.3176 2.3831 -2.3084 38 1 9.2674 0.3253 -1.3454 39 1 7.7776 -1.3993 -0.4134 40 1 5.6741 -2.2109 0.0629 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139799639.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = -75.858283 kcal Electronic energy + Delta-G solvation = -23569.693413 eV Core-core repulsion = 20019.930564 eV Total energy + Delta-G solvation = -3549.762849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.44676 -46.31225 -39.21127 -36.80269 -33.09434 -32.55757 -31.67624 -30.75377 -27.38271 -26.29778 -25.19855 -23.87731 -21.97854 -21.39705 -20.78632 -19.50952 -17.06586 -16.89516 -16.60977 -16.31700 -15.65511 -14.79465 -14.66035 -14.43743 -14.34239 -13.99694 -13.45973 -13.27175 -13.10237 -12.78505 -12.65140 -12.47330 -12.17850 -12.02982 -11.78676 -11.52317 -11.46261 -11.30866 -10.96080 -10.74017 -10.69359 -10.65707 -10.24100 -10.18753 -9.89297 -9.65993 -9.12059 -8.70956 -8.44323 -8.33206 -7.10115 -5.95982 -3.95396 1.46457 1.63843 3.37222 3.40626 3.44455 3.92009 4.16642 4.48721 4.51708 4.90935 5.03094 5.14549 5.25229 5.32129 5.39911 5.54328 5.57553 5.60416 5.69310 5.79249 5.89119 5.95745 6.02851 6.14955 6.22579 6.28005 6.37672 6.41311 6.54384 6.58006 6.70899 6.84810 6.89507 6.97132 7.18502 7.40699 7.42669 7.88593 8.18183 8.31623 8.64196 9.12143 9.67632 11.14966 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.007741 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.499124 B = 3616.233046 C = 4941.308030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.065 3.935 4 N -0.518 5.518 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.072 3.928 15 C -0.018 4.018 16 C -0.109 4.109 17 C -0.100 4.100 18 C -0.133 4.133 19 C -0.094 4.094 20 C -0.153 4.153 21 C 0.316 3.684 22 F -0.166 7.166 23 F -0.208 7.208 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.014 0.986 31 H 0.035 0.965 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 -11.891 -7.331 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.063 4.063 4 N -0.242 5.242 5 C 0.067 3.933 6 C -0.538 4.538 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.204 1.204 14 C -0.056 4.056 15 C -0.018 4.018 16 C -0.128 4.128 17 C -0.118 4.118 18 C -0.151 4.151 19 C -0.112 4.112 20 C -0.154 4.154 21 C 0.262 3.738 22 F -0.147 7.147 23 F -0.189 7.189 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.393 -12.042 -6.965 14.116 hybrid contribution -0.397 1.096 0.448 1.249 sum 1.997 -10.946 -6.517 12.895 Atomic orbital electron populations 1.21739 0.96862 1.00605 1.01425 1.21571 0.94044 0.97946 1.02128 1.22002 0.88149 0.95149 1.00991 1.62190 1.07705 1.33313 1.20947 1.19758 0.95489 0.82270 0.95782 1.21124 1.35700 1.02113 0.94908 0.91925 1.24957 0.95494 0.96174 0.97967 1.69950 1.39199 1.08787 1.36071 0.86614 0.78496 0.77169 0.85440 1.20235 1.21487 1.20355 1.21300 0.90522 1.00900 0.92867 1.19681 0.96226 0.92226 0.93706 1.21121 0.93386 0.98408 0.99890 1.21180 0.95138 0.97073 0.98425 1.20975 0.99379 0.94457 1.00282 1.20809 0.92015 0.99369 0.99019 1.20170 0.94316 0.97119 1.03816 1.20168 0.83752 0.92986 0.76910 1.93188 1.79366 1.87613 1.54529 1.92916 1.71688 1.90550 1.63753 0.93430 0.92887 0.93388 0.92863 0.91285 0.89636 0.96735 0.94727 0.99680 0.93079 0.89755 0.95178 0.85785 0.85997 0.86019 0.85955 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.01 5.62 -26.73 -0.15 -2.16 16 3 C 0.07 1.32 4.81 -3.83 -0.02 1.30 16 4 N -0.52 -11.32 2.61 -237.52 -0.62 -11.94 16 5 C 0.19 5.05 4.57 -4.97 -0.02 5.02 16 6 C -0.50 -14.24 8.28 -34.44 -0.29 -14.53 16 7 H 0.06 1.79 7.26 -52.49 -0.38 1.41 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.07 1.37 4.21 -4.98 -0.02 1.35 16 15 C -0.02 -0.32 4.43 -104.62 -0.46 -0.79 16 16 C -0.11 -1.88 8.67 -39.58 -0.34 -2.23 16 17 C -0.10 -1.48 10.05 -39.58 -0.40 -1.88 16 18 C -0.13 -1.79 10.05 -39.59 -0.40 -2.19 16 19 C -0.09 -1.30 9.67 -39.59 -0.38 -1.68 16 20 C -0.15 -2.50 5.37 -104.62 -0.56 -3.06 16 21 C 0.32 4.79 5.01 36.01 0.18 4.97 16 22 F -0.17 -3.13 14.03 2.25 0.03 -3.10 16 23 F -0.21 -3.21 15.20 2.25 0.03 -3.17 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.89 6.47 -51.93 -0.34 0.55 16 28 H 0.07 1.24 7.48 -51.93 -0.39 0.85 16 29 H 0.09 1.90 6.59 -51.93 -0.34 1.56 16 30 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 31 H 0.03 0.97 6.22 -51.93 -0.32 0.65 16 32 H -0.01 -0.41 8.12 -51.93 -0.42 -0.83 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 1.51 4.21 -51.93 -0.22 1.29 16 35 H 0.03 0.57 7.96 -51.93 -0.41 0.16 16 36 H 0.12 2.10 8.02 -52.49 -0.42 1.68 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.28 7.95 -52.49 -0.42 0.87 16 40 H 0.10 1.12 7.88 -51.93 -0.41 0.71 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -31.25 327.14 -8.24 -39.49 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -5.74 Total: -0.91 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.59 Total: -16.13 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.12 Total: -38.20 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.07 Total: -6.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.25 -8.24 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139799639.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.372 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds