Wall clock time and date at job start Tue Mar 31 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32156 * 119.99756 * 2 1 4 4 C 1.32123 * 119.99625 * 179.97438 * 3 2 1 5 5 C 1.38391 * 120.00174 * 359.97438 * 4 3 2 6 6 N 1.32130 * 119.99439 * 0.02562 * 5 4 3 7 7 C 1.32151 * 119.99756 * 359.72914 * 6 5 4 8 8 C 1.50701 * 119.99699 * 180.27615 * 7 6 5 9 9 N 1.46498 * 109.47302 * 264.50023 * 8 7 6 10 10 C 1.36939 * 119.99936 * 263.76222 * 9 8 7 11 11 H 1.08005 * 120.00099 * 128.42284 * 10 9 8 12 12 C 1.38810 * 120.00067 * 308.41442 * 10 9 8 13 13 N 1.31621 * 120.00038 * 335.01086 * 12 10 9 14 14 Si 1.86796 * 119.99893 * 155.00682 * 12 10 9 15 15 H 1.48498 * 109.47590 * 60.00500 * 14 12 10 16 16 H 1.48508 * 109.47100 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47247 * 299.99988 * 14 12 10 18 18 C 1.46505 * 119.99966 * 83.76332 * 9 8 7 19 19 C 1.50692 * 109.47194 * 90.00281 * 18 9 8 20 20 C 1.38238 * 119.99690 * 269.72289 * 19 18 9 21 21 C 1.38243 * 120.00092 * 179.76867 * 20 19 18 22 22 C 1.38232 * 119.99762 * 0.50477 * 21 20 19 23 23 C 1.38240 * 119.99888 * 359.75295 * 22 21 20 24 24 C 1.38228 * 120.00417 * 359.97438 * 23 22 21 25 25 H 1.08995 * 109.46925 * 96.96116 * 1 2 3 26 26 H 1.09000 * 109.47121 * 216.96159 * 1 2 3 27 27 H 1.09000 * 109.46988 * 336.95992 * 1 2 3 28 28 H 1.08003 * 119.99943 * 179.97438 * 4 3 2 29 29 H 1.07992 * 120.00342 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47498 * 24.50203 * 8 7 6 31 31 H 1.08999 * 109.47478 * 144.50125 * 8 7 6 32 32 H 0.96998 * 119.99917 * 185.08462 * 13 12 10 33 33 H 1.09001 * 109.46497 * 209.99868 * 18 9 8 34 34 H 1.08993 * 109.46881 * 329.99705 * 18 9 8 35 35 H 1.08000 * 120.00040 * 0.02562 * 20 19 18 36 36 H 1.07994 * 120.00384 * 180.23447 * 21 20 19 37 37 H 1.07997 * 120.00466 * 179.72716 * 22 21 20 38 38 H 1.07999 * 120.00078 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.00342 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 0.0005 5 6 4.1810 -0.0540 0.0016 6 7 3.5202 -1.1982 0.0016 7 6 2.1987 -1.1980 0.0060 8 6 1.4452 -2.5031 0.0123 9 7 1.0817 -2.8638 -1.3603 10 6 -0.1610 -2.5524 -1.8439 11 1 -0.2592 -2.0258 -2.7818 12 6 -1.2946 -2.9136 -1.1288 13 7 -1.2505 -3.9317 -0.2958 14 14 -2.8825 -1.9547 -1.3487 15 1 -3.3142 -2.0306 -2.7675 16 1 -3.9366 -2.5367 -0.4794 17 1 -2.6594 -0.5352 -0.9744 18 6 2.0479 -3.5577 -2.2156 19 6 1.8869 -5.0468 -2.0497 20 6 2.6160 -5.7177 -1.0858 21 6 2.4648 -7.0830 -0.9304 22 6 1.5922 -7.7790 -1.7459 23 6 0.8671 -7.1089 -2.7134 24 6 1.0140 -5.7429 -2.8651 25 1 -0.3633 -0.1245 -1.0201 26 1 -0.3633 -0.8211 0.6179 27 1 -0.3633 0.9457 0.4022 28 1 4.0291 2.0798 0.0001 29 1 5.2609 -0.0541 0.0024 30 1 2.0746 -3.2842 0.4386 31 1 0.5409 -2.3977 0.6117 32 1 -2.0596 -4.2305 0.1481 33 1 1.8716 -3.2869 -3.2566 34 1 3.0592 -3.2676 -1.9309 35 1 3.3007 -5.1746 -0.4513 36 1 3.0316 -7.6066 -0.1748 37 1 1.4773 -8.8463 -1.6275 38 1 0.1857 -7.6527 -3.3509 39 1 0.4478 -5.2194 -3.6213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140938006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:36 Heat of formation + Delta-G solvation = 90.743843 kcal Electronic energy + Delta-G solvation = -22219.988522 eV Core-core repulsion = 19128.139269 eV Total energy + Delta-G solvation = -3091.849253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.53984 -38.40392 -35.82275 -33.91631 -32.51995 -31.96358 -30.07936 -29.95861 -27.72647 -26.50818 -25.45662 -23.03733 -22.35029 -21.74294 -21.28725 -19.97067 -17.23313 -16.85300 -16.11430 -15.73625 -15.14151 -14.71463 -14.54684 -14.34514 -14.22094 -13.75471 -13.24246 -13.03283 -12.62573 -12.37237 -12.19103 -12.01724 -11.85987 -11.72369 -11.36972 -11.07579 -10.87399 -10.81708 -10.76442 -10.42451 -10.35877 -10.13117 -10.07059 -10.00888 -8.62396 -8.47538 -8.45174 -8.08624 -7.86096 -6.58124 -5.98264 -3.63890 1.35661 1.70841 2.22240 2.25265 3.24372 3.32334 3.35365 4.18874 4.35182 4.60027 4.63549 4.79158 5.08387 5.13439 5.33979 5.60044 5.62771 5.68515 5.70704 5.76667 5.84403 5.93796 6.05843 6.23853 6.33120 6.34557 6.35901 6.45685 6.67028 6.70904 6.77554 6.86274 6.89145 6.97707 7.17639 7.24614 7.29591 7.61191 7.72406 7.86273 7.88726 8.39976 8.47831 8.99564 9.54647 10.28368 10.99294 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.007517 C = 0.005228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.807990 B = 3723.822197 C = 5354.876633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.452 5.452 4 C 0.024 3.976 5 C 0.029 3.971 6 N -0.440 5.440 7 C 0.083 3.917 8 C 0.207 3.793 9 N -0.555 5.555 10 C -0.289 4.289 11 H 0.055 0.945 12 C 0.047 3.953 13 N -0.853 5.853 14 Si 0.875 3.125 15 H -0.279 1.279 16 H -0.289 1.289 17 H -0.269 1.269 18 C 0.177 3.823 19 C -0.062 4.062 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.088 4.088 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.260 0.740 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.576 1.269 -0.069 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 N -0.168 5.168 4 C -0.135 4.135 5 C -0.131 4.131 6 N -0.156 5.156 7 C -0.061 4.061 8 C 0.080 3.920 9 N -0.273 5.273 10 C -0.419 4.419 11 H 0.073 0.927 12 C -0.159 4.159 13 N -0.489 5.489 14 Si 0.702 3.298 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.194 1.194 18 C 0.051 3.949 19 C -0.065 4.065 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.144 4.144 24 C -0.107 4.107 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.455 1.209 0.095 6.568 hybrid contribution -0.892 0.423 0.012 0.987 sum 5.564 1.631 0.107 5.799 Atomic orbital electron populations 1.20852 0.87469 1.01908 1.04970 1.22163 0.98567 0.88751 0.94659 1.68228 1.08714 1.29999 1.09858 1.23463 0.91148 0.99202 0.99710 1.23578 1.01196 0.89512 0.98780 1.68394 1.09035 1.29136 1.09046 1.23877 0.89965 0.99615 0.92632 1.19767 0.96257 0.87042 0.88981 1.43519 1.11922 1.61802 1.10032 1.18702 0.81552 1.33963 1.07641 0.92734 1.25516 0.97795 0.94642 0.97996 1.70094 1.28234 1.21364 1.29190 0.86890 0.83427 0.81187 0.78250 1.20422 1.21512 1.19407 1.20089 0.93083 0.86277 0.95411 1.20790 0.94174 0.97597 0.93957 1.20916 1.00228 0.93884 0.98313 1.20905 0.99578 0.94719 0.99429 1.20833 0.98780 0.98781 0.97567 1.20966 0.99571 0.95001 0.98839 1.20881 0.97084 0.93249 0.99451 0.88436 0.89927 0.92365 0.82697 0.82667 0.93267 0.89446 0.93004 0.93114 0.93511 0.87280 0.87568 0.87669 0.87549 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 8.42 36.01 0.30 -1.51 16 2 C 0.10 1.97 6.79 -82.41 -0.56 1.41 16 3 N -0.45 -8.33 10.42 -9.28 -0.10 -8.43 16 4 C 0.02 0.37 11.23 -17.37 -0.19 0.18 16 5 C 0.03 0.44 11.23 -17.37 -0.19 0.25 16 6 N -0.44 -8.27 10.42 -9.29 -0.10 -8.37 16 7 C 0.08 1.67 6.36 -82.42 -0.52 1.15 16 8 C 0.21 4.50 5.14 -5.19 -0.03 4.48 16 9 N -0.55 -12.53 2.27 -175.99 -0.40 -12.93 16 10 C -0.29 -6.98 7.27 -15.06 -0.11 -7.08 16 11 H 0.06 1.37 7.94 -52.48 -0.42 0.95 16 12 C 0.05 1.15 4.55 -17.43 -0.08 1.07 16 13 N -0.85 -22.20 12.92 55.49 0.72 -21.48 16 14 Si 0.87 19.23 28.61 -169.99 -4.86 14.37 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -5.64 6.84 56.52 0.39 -5.25 16 18 C 0.18 3.69 5.81 -5.19 -0.03 3.66 16 19 C -0.06 -1.28 5.46 -104.62 -0.57 -1.85 16 20 C -0.11 -2.21 9.70 -39.58 -0.38 -2.60 16 21 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 22 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 23 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 24 C -0.09 -1.77 9.70 -39.58 -0.38 -2.16 16 25 H 0.10 2.00 6.02 -51.93 -0.31 1.69 16 26 H 0.08 1.64 6.23 -51.93 -0.32 1.32 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 31 H 0.09 2.03 5.03 -51.93 -0.26 1.77 16 32 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 33 H 0.05 1.05 7.98 -51.93 -0.41 0.64 16 34 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 35 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -27.30 329.69 -8.82 -36.12 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.10 Total: 6.97 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -3.95 Total: -11.22 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.12 Total: -51.21 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.86 Total: 14.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.30 -8.82 -36.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140938006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.867 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds