Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38695 * 119.28691 * 2 1 4 4 C 1.37975 * 119.58385 * 179.97438 * 3 2 1 5 5 C 1.41052 * 118.26203 * 359.74122 * 4 3 2 6 6 C 1.41090 * 120.70486 * 180.25024 * 5 4 3 7 7 H 1.07999 * 120.00664 * 207.80903 * 6 5 4 8 8 C 1.39976 * 119.99588 * 27.80265 * 6 5 4 9 9 N 1.30833 * 120.00334 * 12.23953 * 8 6 5 10 10 Si 1.86805 * 119.99809 * 192.23190 * 8 6 5 11 11 H 1.48499 * 109.46956 * 90.00672 * 10 8 6 12 12 H 1.48506 * 109.47035 * 210.00283 * 10 8 6 13 13 H 1.48496 * 109.47065 * 330.00379 * 10 8 6 14 14 C 1.41502 * 118.60047 * 0.49698 * 5 4 3 15 15 N 1.39072 * 119.88051 * 179.77842 * 14 5 4 16 16 C 1.37025 * 125.75865 * 48.64548 * 15 14 5 17 17 C 1.35074 * 108.27341 * 179.89454 * 16 15 14 18 18 C 1.40224 * 107.34505 * 359.97171 * 17 16 15 19 19 C 1.35412 * 107.64434 * 0.13023 * 18 17 16 20 20 C 1.50940 * 123.07921 * 179.68022 * 19 18 17 21 21 C 1.53507 * 107.85258 * 344.17566 * 20 19 18 22 22 N 1.47036 * 109.67324 * 49.22360 * 21 20 19 23 23 C 1.47302 * 111.37371 * 288.62268 * 22 21 20 24 24 N 1.31949 * 119.28692 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47494 * 270.02520 * 1 2 3 26 26 H 1.09008 * 109.47115 * 30.02786 * 1 2 3 27 27 H 1.09001 * 109.46963 * 150.02243 * 1 2 3 28 28 H 1.08001 * 120.21151 * 359.94742 * 3 2 1 29 29 H 1.07999 * 120.87137 * 179.97438 * 4 3 2 30 30 H 0.96995 * 120.00594 * 180.02562 * 9 8 6 31 31 H 1.08006 * 125.86307 * 359.87892 * 16 15 14 32 32 H 1.08004 * 126.33176 * 179.97438 * 17 16 15 33 33 H 1.08994 * 109.78363 * 103.76324 * 20 19 18 34 34 H 1.08997 * 109.78277 * 224.53287 * 20 19 18 35 35 H 1.08998 * 109.43798 * 169.27535 * 21 20 19 36 36 H 1.08999 * 109.43537 * 289.15893 * 21 20 19 37 37 H 1.00895 * 111.05354 * 164.35255 * 22 21 20 38 38 H 1.08998 * 109.70916 * 291.41516 * 23 22 21 39 39 H 1.09004 * 109.70221 * 170.84427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2097 0.0000 4 6 3.5652 1.2168 0.0005 5 6 4.2396 -0.0221 0.0067 6 6 5.6494 -0.0749 0.0128 7 1 6.1601 -0.9229 -0.4191 8 6 6.3865 0.9720 0.5786 9 7 5.7848 1.8758 1.3086 10 14 8.2293 1.0786 0.2916 11 1 8.4945 1.8824 -0.9286 12 1 8.8758 1.7262 1.4612 13 1 8.7824 -0.2881 0.1140 14 6 3.4722 -1.2109 0.0012 15 7 4.1097 -2.4470 0.0024 16 6 5.1256 -2.8232 0.8414 17 6 5.4777 -4.0915 0.5381 18 6 4.6563 -4.5122 -0.5177 19 6 3.8294 -3.4859 -0.8285 20 6 2.7992 -3.5623 -1.9291 21 6 3.1459 -4.7666 -2.8155 22 7 3.3739 -5.9510 -1.9744 23 6 4.6379 -5.8426 -1.2259 24 7 2.1525 -1.1508 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6373 2.1402 -0.0009 29 1 4.1146 2.1467 0.0001 30 1 6.2955 2.6015 1.7004 31 1 5.5690 -2.2107 1.6126 32 1 6.2492 -4.6740 1.0196 33 1 1.8073 -3.6953 -1.4974 34 1 2.8240 -2.6477 -2.5216 35 1 2.3212 -4.9620 -3.5008 36 1 4.0481 -4.5485 -3.3871 37 1 3.3508 -6.7963 -2.5248 38 1 5.4798 -5.9035 -1.9154 39 1 4.7025 -6.6488 -0.4951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157449213.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = 75.803231 kcal Electronic energy + Delta-G solvation = -22237.721712 eV Core-core repulsion = 19145.224586 eV Total energy + Delta-G solvation = -3092.497126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87894 -38.49831 -36.42416 -34.48022 -32.61845 -31.22687 -30.64820 -29.34827 -27.90558 -27.79409 -24.56924 -23.51300 -22.15334 -21.50902 -21.07680 -19.30845 -17.67012 -17.59142 -16.79218 -15.85543 -15.24797 -14.88398 -14.42488 -14.17350 -14.02535 -13.70071 -13.23799 -12.99987 -12.71678 -12.63491 -12.22633 -12.09102 -11.89651 -11.65569 -11.62489 -11.42034 -11.29961 -11.14028 -11.10225 -10.78455 -10.69737 -10.40784 -10.08749 -9.56669 -8.69079 -8.37578 -8.30785 -8.04400 -7.32519 -7.01509 -6.98043 -4.69457 2.20243 2.59597 2.92787 2.97299 3.00825 3.30439 3.70410 3.72257 3.86815 4.34808 4.47213 5.21341 5.26043 5.44287 5.62878 5.70635 5.78246 5.87199 5.91820 6.01686 6.03932 6.13796 6.22222 6.28092 6.28962 6.32635 6.39501 6.54651 6.61486 6.72820 6.84155 6.89865 6.96508 7.02864 7.30731 7.42376 7.46947 7.64492 7.70122 7.85654 8.07931 8.17654 8.34833 8.42157 8.72313 9.32610 9.85138 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.007449 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.796752 B = 3757.934374 C = 5381.240531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.009 3.991 3 C -0.144 4.144 4 C -0.118 4.118 5 C 0.077 3.923 6 C -0.437 4.437 7 H 0.090 0.910 8 C 0.074 3.926 9 N -0.787 5.787 10 Si 0.915 3.085 11 H -0.265 1.265 12 H -0.274 1.274 13 H -0.256 1.256 14 C 0.179 3.821 15 N -0.339 5.339 16 C 0.019 3.981 17 C -0.207 4.207 18 C -0.196 4.196 19 C 0.039 3.961 20 C -0.032 4.032 21 C 0.068 3.932 22 N -0.690 5.690 23 C 0.142 3.858 24 N -0.459 5.459 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.287 0.713 31 H 0.159 0.841 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.337 0.663 38 H 0.028 0.972 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -5.176 -4.312 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.132 4.132 3 C -0.165 4.165 4 C -0.145 4.145 5 C 0.071 3.929 6 C -0.466 4.466 7 H 0.108 0.892 8 C -0.145 4.145 9 N -0.411 5.411 10 Si 0.739 3.261 11 H -0.190 1.190 12 H -0.199 1.199 13 H -0.180 1.180 14 C -0.048 4.048 15 N -0.008 5.008 16 C -0.111 4.111 17 C -0.231 4.231 18 C -0.203 4.203 19 C -0.075 4.075 20 C -0.070 4.070 21 C -0.062 4.062 22 N -0.321 5.321 23 C 0.013 3.987 24 N -0.169 5.169 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.098 0.902 31 H 0.176 0.824 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.154 0.846 38 H 0.046 0.954 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.050 -5.159 -3.635 6.636 hybrid contribution 2.028 0.951 -0.533 2.303 sum -0.022 -4.207 -4.168 5.923 Atomic orbital electron populations 1.20300 0.90947 1.01127 1.00820 1.20093 0.94827 0.87519 1.10810 1.21529 0.95310 0.97282 1.02371 1.21629 0.92388 0.98380 1.02058 1.18130 0.94256 0.89953 0.90566 1.19627 0.90694 1.04626 1.31645 0.89239 1.25998 1.02030 0.94002 0.92516 1.69748 1.39067 1.10582 1.21669 0.86157 0.80783 0.80190 0.79008 1.19025 1.19901 1.17978 1.18012 0.87730 0.83487 1.15562 1.40401 1.26386 1.08782 1.25193 1.21850 0.94581 0.95898 0.98795 1.20255 1.04726 0.95721 1.02445 1.18966 1.02771 0.95323 1.03223 1.20024 1.01403 0.88194 0.97838 1.20043 0.97008 0.96675 0.93312 1.21894 0.99620 0.90767 0.93910 1.60286 1.36433 1.04220 1.31121 1.20182 0.88624 0.94793 0.95113 1.66164 1.08884 1.30476 1.11331 0.92881 0.92558 0.92389 0.87612 0.84800 0.90201 0.82357 0.85447 0.90262 0.91616 0.90906 0.95069 0.84598 0.95371 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.01 0.37 -0.92 16 2 C 0.01 0.20 6.79 -82.37 -0.56 -0.36 16 3 C -0.14 -3.17 9.70 -39.51 -0.38 -3.55 16 4 C -0.12 -2.87 8.77 -38.61 -0.34 -3.20 16 5 C 0.08 1.97 5.56 -106.51 -0.59 1.38 16 6 C -0.44 -10.88 7.41 -37.85 -0.28 -11.16 16 7 H 0.09 2.26 6.77 -52.49 -0.36 1.90 16 8 C 0.07 1.72 5.25 -17.33 -0.09 1.63 16 9 N -0.79 -18.67 10.90 55.55 0.61 -18.06 16 10 Si 0.92 17.66 29.58 -169.99 -5.03 12.63 16 11 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 12 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 14 C 0.18 4.51 6.77 -154.29 -1.04 3.47 16 15 N -0.34 -8.06 2.66 -57.74 -0.15 -8.22 16 16 C 0.02 0.43 9.23 -16.36 -0.15 0.28 16 17 C -0.21 -4.14 10.85 -39.96 -0.43 -4.58 16 18 C -0.20 -3.91 6.03 -104.87 -0.63 -4.55 16 19 C 0.04 0.85 6.68 -81.66 -0.55 0.31 16 20 C -0.03 -0.61 5.97 -27.50 -0.16 -0.77 16 21 C 0.07 1.02 6.52 -3.49 -0.02 1.00 16 22 N -0.69 -10.15 6.82 -114.34 -0.78 -10.93 16 23 C 0.14 2.25 6.94 -4.74 -0.03 2.22 16 24 N -0.46 -11.14 9.88 -7.96 -0.08 -11.22 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.83 8.07 -51.92 -0.42 0.41 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 29 H 0.13 3.26 6.31 -52.49 -0.33 2.93 16 30 H 0.29 6.17 8.30 -40.82 -0.34 5.84 16 31 H 0.16 3.49 7.64 -52.48 -0.40 3.09 16 32 H 0.13 2.18 8.06 -52.48 -0.42 1.75 16 33 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 37 H 0.34 3.83 8.90 -39.29 -0.35 3.48 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 320.93 15.07 4.84 4.84 Total: -1.00 -27.90 320.93 -10.72 -38.62 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.22 Total: 11.16 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -4.90 Total: -18.81 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.41 Total: -48.43 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.90 -10.72 -38.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157449213.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.422 kcal (2) G-P(sol) polarization free energy of solvation -27.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds