Wall clock time and date at job start Tue Mar 31 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38664 * 120.41985 * 2 1 4 4 C 1.38630 * 118.42106 * 179.97438 * 3 2 1 5 5 C 1.38223 * 119.15999 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.61652 * 180.02562 * 5 4 3 7 7 H 1.09004 * 109.47645 * 34.99699 * 6 5 4 8 8 C 1.52997 * 109.47225 * 274.99633 * 6 5 4 9 9 N 1.46506 * 109.47434 * 154.99261 * 6 5 4 10 10 C 1.39081 * 120.00514 * 204.99925 * 9 6 5 11 11 C 1.38741 * 119.65793 * 0.02562 * 10 9 6 12 12 C 1.40770 * 118.67189 * 179.97438 * 11 10 9 13 13 C 1.41547 * 120.99813 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99684 * 23.18696 * 13 12 11 15 15 C 1.40027 * 120.00438 * 203.18868 * 13 12 11 16 16 N 1.30740 * 119.99858 * 17.29662 * 15 13 12 17 17 Si 1.86796 * 120.00180 * 197.29362 * 15 13 12 18 18 H 1.48505 * 109.47273 * 60.00195 * 17 15 13 19 19 H 1.48496 * 109.47246 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.47380 * 300.00259 * 17 15 13 21 21 C 1.41189 * 118.01298 * 0.02562 * 12 11 10 22 22 C 1.36563 * 119.14295 * 359.97438 * 21 12 11 23 23 N 1.32092 * 121.27104 * 359.72839 * 22 21 12 24 24 N 1.31853 * 120.76241 * 359.71560 * 5 4 3 25 25 C 1.31880 * 121.72878 * 0.57640 * 24 5 4 26 26 H 1.09005 * 109.46813 * 270.02139 * 1 2 3 27 27 H 1.08994 * 109.46843 * 30.01420 * 1 2 3 28 28 H 1.08996 * 109.47498 * 150.02223 * 1 2 3 29 29 H 1.08008 * 120.79171 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.41987 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.47274 * 60.00079 * 8 6 5 32 32 H 1.09007 * 109.46885 * 180.02562 * 8 6 5 33 33 H 1.09005 * 109.47017 * 300.00012 * 8 6 5 34 34 H 0.97006 * 119.99527 * 25.00214 * 9 6 5 35 35 H 1.08008 * 120.66518 * 359.97325 * 11 10 9 36 36 H 0.97007 * 120.00270 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.42952 * 179.97438 * 21 12 11 38 38 H 1.08001 * 119.36008 * 180.02562 * 22 21 12 39 39 H 1.07994 * 119.62192 * 179.70712 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0005 5 6 4.2256 -0.0824 0.0005 6 6 5.7312 -0.1470 0.0017 7 1 6.1299 0.6783 0.5918 8 6 6.2473 -0.0427 -1.4348 9 7 6.1651 -1.4187 0.5854 10 6 7.4223 -1.5223 1.1710 11 6 8.2598 -0.4164 1.1990 12 6 9.5276 -0.5443 1.7973 13 6 10.4215 0.5518 1.8526 14 1 10.0424 1.5613 1.7917 15 6 11.7972 0.3274 1.9861 16 7 12.2955 -0.8526 1.7241 17 14 12.9205 1.7139 2.5384 18 1 12.5016 2.1845 3.8832 19 1 14.3202 1.2221 2.6004 20 1 12.8324 2.8375 1.5712 21 6 9.8813 -1.7989 2.3398 22 6 8.9900 -2.8309 2.2653 23 7 7.8057 -2.6746 1.7016 24 7 3.5254 -1.1996 0.0056 25 6 2.2067 -1.1917 -0.0004 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5140 28 1 -0.3634 -0.8901 -0.5135 29 1 1.6890 2.1423 0.0004 30 1 4.1736 2.0591 0.0010 31 1 5.9245 0.9036 -1.8691 32 1 7.3363 -0.0899 -1.4339 33 1 5.8487 -0.8680 -2.0249 34 1 5.5754 -2.1887 0.5634 35 1 7.9453 0.5237 0.7702 36 1 13.2485 -1.0082 1.8169 37 1 10.8444 -1.9406 2.8076 38 1 9.2569 -3.7919 2.6795 39 1 1.6672 -2.1272 -0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158020998.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:30 Heat of formation + Delta-G solvation = 59.253021 kcal Electronic energy + Delta-G solvation = -20964.611811 eV Core-core repulsion = 17871.397014 eV Total energy + Delta-G solvation = -3093.214797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45442 -38.40819 -36.04173 -34.05127 -33.23096 -32.14154 -30.63730 -30.04672 -27.43628 -27.03660 -25.79989 -23.88684 -23.00518 -21.70857 -20.98092 -20.11842 -17.69860 -16.78706 -16.49464 -15.57920 -15.20703 -14.83173 -14.78205 -14.58167 -14.00313 -13.74360 -13.47763 -13.30160 -13.19136 -12.77712 -12.71126 -12.50343 -12.26640 -12.06921 -11.86433 -11.59130 -11.35105 -11.16106 -10.93858 -10.71673 -10.27411 -9.85536 -9.74576 -9.46530 -9.36817 -8.99579 -8.70973 -7.89921 -7.81163 -6.78575 -6.35743 -4.50552 1.01729 1.22383 2.85450 3.05505 3.08004 3.13636 3.42171 3.70057 3.90644 4.07681 4.24828 4.63376 4.67821 4.76853 4.86799 4.91961 5.27235 5.31186 5.39436 5.54579 5.59085 5.66456 5.74231 5.87512 5.89646 6.06136 6.10344 6.14635 6.28248 6.51458 6.66781 6.85906 6.98048 7.01321 7.07325 7.34227 7.62938 7.89539 7.96363 8.13833 8.25197 8.52849 8.83603 8.89141 8.99537 9.88116 10.15864 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027866 B = 0.003535 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.576162 B = 7919.389264 C = 8545.932480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.151 4.151 3 C -0.075 4.075 4 C -0.162 4.162 5 C 0.130 3.870 6 C 0.213 3.787 7 H 0.094 0.906 8 C -0.161 4.161 9 N -0.730 5.730 10 C 0.402 3.598 11 C -0.340 4.340 12 C 0.157 3.843 13 C -0.458 4.458 14 H 0.078 0.922 15 C 0.080 3.920 16 N -0.784 5.784 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.248 4.248 22 C 0.117 3.883 23 N -0.623 5.623 24 N -0.471 5.471 25 C 0.103 3.897 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.401 0.599 35 H 0.097 0.903 36 H 0.282 0.718 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.011 4.824 -3.880 17.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.153 4.153 3 C -0.101 4.101 4 C -0.182 4.182 5 C -0.008 4.008 6 C 0.105 3.895 7 H 0.112 0.888 8 C -0.221 4.221 9 N -0.367 5.367 10 C 0.171 3.829 11 C -0.367 4.367 12 C 0.149 3.851 13 C -0.489 4.489 14 H 0.096 0.904 15 C -0.140 4.140 16 N -0.409 5.409 17 Si 0.734 3.266 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.190 1.190 21 C -0.273 4.273 22 C -0.033 4.033 23 N -0.347 5.347 24 N -0.179 5.179 25 C -0.055 4.055 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.237 0.763 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.879 3.328 -3.948 16.697 hybrid contribution 0.535 1.843 0.205 1.930 sum -15.344 5.171 -3.744 16.619 Atomic orbital electron populations 1.20686 0.90378 1.02903 1.02458 1.20908 0.97463 0.94381 1.02528 1.21424 0.93864 0.98094 0.96705 1.21897 0.95131 0.99038 1.02125 1.21523 0.96626 0.88611 0.94087 1.19511 0.85892 0.89227 0.94885 0.88844 1.22272 1.03043 1.01185 0.95565 1.44053 1.15748 1.11737 1.65186 1.17949 0.84821 0.90161 0.90009 1.21127 0.99279 0.97895 1.18397 1.17574 0.90080 0.92485 0.84959 1.19537 0.90719 0.94140 1.44538 0.90375 1.25951 0.99224 0.96589 0.92234 1.69805 1.14721 1.23030 1.33336 0.86357 0.78439 0.81439 0.80410 1.18766 1.20286 1.18952 1.21779 1.01718 0.94874 1.08897 1.21358 0.88817 0.97334 0.95747 1.66752 1.20310 1.24802 1.22797 1.67334 1.08028 1.31102 1.11482 1.22655 0.89713 0.97430 0.95661 0.91056 0.91521 0.91279 0.84936 0.84489 0.92461 0.90606 0.92535 0.76320 0.88465 0.90722 0.85976 0.86540 0.82941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.04 36.01 0.36 -0.35 16 2 C -0.15 -1.51 5.90 -104.48 -0.62 -2.13 16 3 C -0.07 -0.75 9.86 -39.28 -0.39 -1.14 16 4 C -0.16 -1.92 9.77 -39.44 -0.39 -2.31 16 5 C 0.13 1.91 5.89 -82.59 -0.49 1.43 16 6 C 0.21 3.56 2.51 -69.08 -0.17 3.38 16 7 H 0.09 1.59 6.42 -51.93 -0.33 1.25 16 8 C -0.16 -2.49 9.39 37.16 0.35 -2.14 16 9 N -0.73 -14.86 5.22 -55.11 -0.29 -15.15 16 10 C 0.40 9.77 7.63 -154.98 -1.18 8.59 16 11 C -0.34 -8.56 8.63 -38.44 -0.33 -8.89 16 12 C 0.16 4.28 5.61 -106.56 -0.60 3.69 16 13 C -0.46 -12.17 9.12 -37.65 -0.34 -12.51 16 14 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 15 C 0.08 1.99 5.20 -17.35 -0.09 1.90 16 16 N -0.78 -20.21 10.90 55.55 0.61 -19.60 16 17 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 18 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.25 -6.66 8.75 -39.07 -0.34 -7.00 16 22 C 0.12 2.96 11.10 -18.04 -0.20 2.76 16 23 N -0.62 -15.97 10.37 -12.82 -0.13 -16.10 16 24 N -0.47 -7.09 9.03 -9.48 -0.09 -7.17 16 25 C 0.10 1.23 10.86 -17.55 -0.19 1.04 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.33 7.66 -51.92 -0.40 0.93 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 8.17 7.75 -40.82 -0.32 7.85 16 35 H 0.10 2.26 6.08 -52.48 -0.32 1.94 16 36 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 37 H 0.12 3.32 6.16 -52.49 -0.32 3.00 16 38 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 39 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -30.44 329.79 -9.62 -40.06 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -5.04 Total: 13.27 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -4.62 Total: -13.69 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.10 Total: -58.03 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.44 -9.62 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158020998.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.310 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds