Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 N 1.46501 * 109.47188 * 120.00217 * 2 1 3 5 5 C 1.39084 * 120.00214 * 64.26813 * 4 2 1 6 6 C 1.38752 * 119.65446 * 5.36776 * 5 4 2 7 7 C 1.40768 * 118.66498 * 179.70389 * 6 5 4 8 8 C 1.41554 * 120.99007 * 180.25788 * 7 6 5 9 9 H 1.07999 * 120.00146 * 334.35576 * 8 7 6 10 10 C 1.40028 * 120.00122 * 154.35942 * 8 7 6 11 11 N 1.30743 * 120.00079 * 164.38222 * 10 8 7 12 12 Si 1.86800 * 119.99725 * 344.37448 * 10 8 7 13 13 H 1.48505 * 109.46884 * 95.42394 * 12 10 8 14 14 H 1.48496 * 109.47356 * 215.42274 * 12 10 8 15 15 H 1.48503 * 109.47433 * 335.42673 * 12 10 8 16 16 C 1.41192 * 118.01894 * 0.27635 * 7 6 5 17 17 C 1.36556 * 119.14142 * 0.02562 * 16 7 6 18 18 N 1.32091 * 121.27082 * 359.97438 * 17 16 7 19 19 C 1.50702 * 109.47047 * 239.99942 * 2 1 3 20 20 C 1.38656 * 120.79041 * 225.44714 * 19 2 1 21 21 C 1.38199 * 119.15984 * 179.80065 * 20 19 2 22 22 N 1.31865 * 120.76828 * 0.48504 * 21 20 19 23 23 C 1.31870 * 121.72379 * 359.74628 * 22 21 20 24 24 C 1.38205 * 120.76564 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47257 * 293.87610 * 1 2 3 26 26 H 1.09004 * 109.47270 * 53.87615 * 1 2 3 27 27 H 1.09004 * 109.47556 * 173.87406 * 1 2 3 28 28 H 1.09004 * 109.47817 * 184.62936 * 3 2 1 29 29 H 1.08997 * 109.47145 * 304.63235 * 3 2 1 30 30 H 1.09003 * 109.47311 * 64.63019 * 3 2 1 31 31 H 0.97002 * 119.99894 * 244.27007 * 4 2 1 32 32 H 1.07995 * 120.66438 * 359.97438 * 6 5 4 33 33 H 0.96998 * 119.99689 * 180.02562 * 11 10 8 34 34 H 1.07994 * 120.42723 * 179.97438 * 16 7 6 35 35 H 1.08001 * 119.36232 * 179.97438 * 17 16 7 36 36 H 1.08001 * 120.41305 * 0.02562 * 20 19 2 37 37 H 1.07997 * 119.61409 * 180.20753 * 21 20 19 38 38 H 1.08001 * 119.61932 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.41824 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7571 -2.0453 1.3724 6 6 1.1317 -2.7611 0.3615 7 6 0.8831 -4.1324 0.5595 8 6 0.2530 -4.9108 -0.4410 9 1 -0.4006 -4.4395 -1.1600 10 6 0.4772 -6.2918 -0.4984 11 7 -0.3168 -7.0542 -1.2038 12 14 1.9109 -7.0447 0.4328 13 1 1.4387 -7.5432 1.7496 14 1 2.4724 -8.1737 -0.3515 15 1 2.9612 -6.0157 0.6408 16 6 1.2805 -4.7083 1.7859 17 6 1.8844 -3.9221 2.7249 18 7 2.1027 -2.6378 2.5064 19 6 2.0322 -0.7104 -1.2305 20 6 3.0567 -1.6408 -1.1444 21 6 3.4883 -2.2754 -2.2937 22 7 2.9443 -1.9979 -3.4624 23 6 1.9716 -1.1156 -3.5825 24 6 1.4851 -0.4448 -2.4764 25 1 -0.3634 0.4160 0.9398 26 1 -0.3634 0.6059 -0.8301 27 1 -0.3634 -1.0218 -0.1097 28 1 3.1269 1.4436 -0.0829 29 1 1.6105 1.9797 -0.8456 30 1 1.7460 1.9318 0.9286 31 1 2.5238 -0.2031 1.8653 32 1 0.8454 -2.2768 -0.5603 33 1 -0.1616 -8.0109 -1.2433 34 1 1.1083 -5.7568 1.9790 35 1 2.1895 -4.3588 3.6644 36 1 3.5090 -1.8693 -0.1906 37 1 4.2835 -3.0039 -2.2346 38 1 1.5509 -0.9142 -4.5566 39 1 0.6886 0.2770 -2.5813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160311898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = 78.966218 kcal Electronic energy + Delta-G solvation = -22655.291155 eV Core-core repulsion = 19562.931187 eV Total energy + Delta-G solvation = -3092.359969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52757 -38.65091 -36.93729 -34.05850 -32.35537 -31.27361 -30.93170 -30.39637 -28.11859 -27.12579 -25.81878 -23.77370 -22.93975 -21.83381 -21.05459 -19.79446 -17.81799 -16.65543 -16.32747 -15.84583 -15.55755 -15.24000 -14.81399 -14.39144 -13.91552 -13.78405 -13.60691 -13.45274 -13.16045 -12.93358 -12.65166 -12.31229 -12.16777 -12.08459 -11.56475 -11.42278 -11.21880 -11.10875 -10.92524 -10.72140 -10.61785 -9.72847 -9.45140 -9.37535 -9.07139 -8.90873 -8.69276 -8.19877 -8.04563 -7.02502 -6.76872 -4.67263 1.54416 1.63848 2.61682 2.77797 3.10007 3.21586 3.30518 3.73001 3.93814 4.19586 4.56429 4.70336 4.84314 4.94772 5.13605 5.26556 5.43142 5.49806 5.54126 5.59649 5.71205 5.80224 5.86621 5.91871 6.00857 6.03695 6.15542 6.35878 6.40390 6.44451 6.53479 6.65990 6.70011 6.78088 7.08771 7.09113 7.25035 7.57278 7.74175 7.94305 8.23526 8.37291 8.46723 8.56953 8.73655 9.48020 9.99079 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.007541 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.170400 B = 3711.946886 C = 4601.594457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.229 3.771 3 C -0.146 4.146 4 N -0.734 5.734 5 C 0.403 3.597 6 C -0.322 4.322 7 C 0.134 3.866 8 C -0.432 4.432 9 H 0.089 0.911 10 C 0.085 3.915 11 N -0.800 5.800 12 Si 0.921 3.079 13 H -0.271 1.271 14 H -0.294 1.294 15 H -0.243 1.243 16 C -0.316 4.316 17 C 0.147 3.853 18 N -0.621 5.621 19 C -0.042 4.042 20 C -0.127 4.127 21 C 0.095 3.905 22 N -0.487 5.487 23 C 0.090 3.910 24 C -0.172 4.172 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.394 0.606 32 H 0.114 0.886 33 H 0.287 0.713 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 11.858 -0.343 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.141 3.859 3 C -0.203 4.203 4 N -0.369 5.369 5 C 0.174 3.826 6 C -0.348 4.348 7 C 0.125 3.875 8 C -0.462 4.462 9 H 0.107 0.893 10 C -0.135 4.135 11 N -0.424 5.424 12 Si 0.748 3.252 13 H -0.197 1.197 14 H -0.222 1.222 15 H -0.166 1.166 16 C -0.341 4.341 17 C -0.005 4.005 18 N -0.344 5.344 19 C -0.051 4.051 20 C -0.147 4.147 21 C -0.060 4.060 22 N -0.196 5.196 23 C -0.067 4.067 24 C -0.193 4.193 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.229 0.771 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.140 0.860 36 H 0.152 0.848 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.520 11.721 -0.726 12.583 hybrid contribution -0.215 -0.664 0.733 1.012 sum 4.305 11.057 0.007 11.865 Atomic orbital electron populations 1.22411 0.94032 1.04197 1.01776 1.18847 0.93797 0.90726 0.82556 1.21994 1.01748 0.93723 1.02878 1.44294 1.62755 1.06927 1.22960 1.17923 0.91115 0.83858 0.89662 1.21452 1.17032 0.95852 1.00499 1.17693 0.86874 0.91832 0.91065 1.19492 1.23342 0.91394 1.11924 0.89338 1.26225 0.96616 0.97099 0.93589 1.69634 1.33103 1.06981 1.32671 0.86202 0.82407 0.78292 0.78259 1.19722 1.22186 1.16603 1.21441 1.15051 1.00079 0.97547 1.21248 0.93674 0.88559 0.96990 1.66828 1.32508 1.12570 1.22535 1.20472 0.94403 0.95599 0.94674 1.22018 0.96848 0.95753 1.00048 1.22607 0.98326 0.97380 0.87725 1.67586 1.09747 1.14575 1.27668 1.22566 0.93312 0.92467 0.98393 1.21829 1.01804 1.02606 0.93026 0.91997 0.92074 0.90305 0.91951 0.90925 0.91475 0.77147 0.86825 0.90236 0.88115 0.85955 0.84849 0.83419 0.83386 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 7.89 37.15 0.29 -2.04 16 2 C 0.23 3.21 0.91 -132.98 -0.12 3.09 16 3 C -0.15 -1.51 8.52 37.16 0.32 -1.19 16 4 N -0.73 -12.04 4.60 -48.86 -0.22 -12.27 16 5 C 0.40 8.41 5.86 -154.97 -0.91 7.50 16 6 C -0.32 -7.34 5.92 -38.44 -0.23 -7.57 16 7 C 0.13 3.39 5.25 -106.56 -0.56 2.83 16 8 C -0.43 -11.70 9.67 -37.65 -0.36 -12.06 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 10 C 0.09 2.24 5.47 -17.34 -0.09 2.15 16 11 N -0.80 -21.27 13.92 55.55 0.77 -20.49 16 12 Si 0.92 21.01 24.38 -169.99 -4.14 16.87 16 13 H -0.27 -5.97 6.73 56.52 0.38 -5.59 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.24 -5.68 6.53 56.52 0.37 -5.31 16 16 C -0.32 -7.65 7.06 -39.07 -0.28 -7.93 16 17 C 0.15 3.28 11.10 -18.05 -0.20 3.08 16 18 N -0.62 -13.72 10.37 -12.82 -0.13 -13.86 16 19 C -0.04 -0.65 2.61 -104.32 -0.27 -0.93 16 20 C -0.13 -2.21 7.05 -39.44 -0.28 -2.49 16 21 C 0.10 1.68 11.18 -17.55 -0.20 1.48 16 22 N -0.49 -8.57 10.36 -13.26 -0.14 -8.71 16 23 C 0.09 1.37 11.18 -17.55 -0.20 1.17 16 24 C -0.17 -2.44 9.22 -39.44 -0.36 -2.81 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.69 7.11 -51.93 -0.37 0.33 16 27 H 0.08 1.38 5.61 -51.93 -0.29 1.09 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.39 5.88 8.60 -40.82 -0.35 5.53 16 32 H 0.11 2.55 3.90 -52.49 -0.20 2.34 16 33 H 0.29 6.90 8.29 -40.82 -0.34 6.56 16 34 H 0.10 2.41 4.08 -52.49 -0.21 2.20 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.13 2.49 6.15 -52.49 -0.32 2.16 16 37 H 0.15 2.36 8.06 -52.49 -0.42 1.93 16 38 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.13 1.45 7.02 -52.48 -0.37 1.08 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -29.47 308.46 -7.36 -36.83 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.69 Total: 12.70 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -3.45 Total: -15.72 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.28 Total: -55.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.47 -7.36 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160311898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.792 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds