Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 N 1.46501 * 109.47188 * 120.00217 * 2 1 3 5 5 C 1.39084 * 120.00214 * 64.26813 * 4 2 1 6 6 C 1.38752 * 119.65446 * 5.36776 * 5 4 2 7 7 C 1.40768 * 118.66498 * 179.70389 * 6 5 4 8 8 C 1.41554 * 120.99007 * 180.25788 * 7 6 5 9 9 H 1.07999 * 120.00146 * 334.35576 * 8 7 6 10 10 C 1.40028 * 120.00122 * 154.35942 * 8 7 6 11 11 N 1.30743 * 120.00079 * 164.38222 * 10 8 7 12 12 Si 1.86800 * 119.99725 * 344.37448 * 10 8 7 13 13 H 1.48505 * 109.46884 * 95.42394 * 12 10 8 14 14 H 1.48496 * 109.47356 * 215.42274 * 12 10 8 15 15 H 1.48503 * 109.47433 * 335.42673 * 12 10 8 16 16 C 1.41192 * 118.01894 * 0.27635 * 7 6 5 17 17 C 1.36556 * 119.14142 * 0.02562 * 16 7 6 18 18 N 1.32091 * 121.27082 * 359.97438 * 17 16 7 19 19 C 1.50702 * 109.47047 * 239.99942 * 2 1 3 20 20 C 1.38656 * 120.79041 * 225.44714 * 19 2 1 21 21 C 1.38199 * 119.15984 * 179.80065 * 20 19 2 22 22 N 1.31865 * 120.76828 * 0.48504 * 21 20 19 23 23 C 1.31870 * 121.72379 * 359.74628 * 22 21 20 24 24 C 1.38205 * 120.76564 * 0.02562 * 23 22 21 25 25 H 1.09005 * 109.47257 * 293.87610 * 1 2 3 26 26 H 1.09004 * 109.47270 * 53.87615 * 1 2 3 27 27 H 1.09004 * 109.47556 * 173.87406 * 1 2 3 28 28 H 1.09004 * 109.47817 * 184.62936 * 3 2 1 29 29 H 1.08997 * 109.47145 * 304.63235 * 3 2 1 30 30 H 1.09003 * 109.47311 * 64.63019 * 3 2 1 31 31 H 0.97002 * 119.99894 * 244.27007 * 4 2 1 32 32 H 1.07995 * 120.66438 * 359.97438 * 6 5 4 33 33 H 0.96998 * 119.99689 * 180.02562 * 11 10 8 34 34 H 1.07994 * 120.42723 * 179.97438 * 16 7 6 35 35 H 1.08001 * 119.36232 * 179.97438 * 17 16 7 36 36 H 1.08001 * 120.41305 * 0.02562 * 20 19 2 37 37 H 1.07997 * 119.61409 * 180.20753 * 21 20 19 38 38 H 1.08001 * 119.61932 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.41824 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7571 -2.0453 1.3724 6 6 1.1317 -2.7611 0.3615 7 6 0.8831 -4.1324 0.5595 8 6 0.2530 -4.9108 -0.4410 9 1 -0.4006 -4.4395 -1.1600 10 6 0.4772 -6.2918 -0.4984 11 7 -0.3168 -7.0542 -1.2038 12 14 1.9109 -7.0447 0.4328 13 1 1.4387 -7.5432 1.7496 14 1 2.4724 -8.1737 -0.3515 15 1 2.9612 -6.0157 0.6408 16 6 1.2805 -4.7083 1.7859 17 6 1.8844 -3.9221 2.7249 18 7 2.1027 -2.6378 2.5064 19 6 2.0322 -0.7104 -1.2305 20 6 3.0567 -1.6408 -1.1444 21 6 3.4883 -2.2754 -2.2937 22 7 2.9443 -1.9979 -3.4624 23 6 1.9716 -1.1156 -3.5825 24 6 1.4851 -0.4448 -2.4764 25 1 -0.3634 0.4160 0.9398 26 1 -0.3634 0.6059 -0.8301 27 1 -0.3634 -1.0218 -0.1097 28 1 3.1269 1.4436 -0.0829 29 1 1.6105 1.9797 -0.8456 30 1 1.7460 1.9318 0.9286 31 1 2.5238 -0.2031 1.8653 32 1 0.8454 -2.2768 -0.5603 33 1 -0.1616 -8.0109 -1.2433 34 1 1.1083 -5.7568 1.9790 35 1 2.1895 -4.3588 3.6644 36 1 3.5090 -1.8693 -0.1906 37 1 4.2835 -3.0039 -2.2346 38 1 1.5509 -0.9142 -4.5566 39 1 0.6886 0.2770 -2.5813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160311898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = 59.863356 kcal Electronic energy + Delta-G solvation = -22656.119518 eV Core-core repulsion = 19562.931187 eV Total energy + Delta-G solvation = -3093.188331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86018 -40.25675 -38.31255 -35.94212 -33.90870 -32.96990 -32.26282 -31.69100 -29.62939 -28.32538 -27.61367 -25.03911 -24.22105 -23.49354 -22.85406 -21.08292 -19.58966 -18.06650 -17.97292 -17.30942 -17.16454 -16.55576 -16.33128 -16.04592 -15.32133 -15.13933 -15.03514 -14.92547 -14.77812 -14.34286 -14.20968 -13.68942 -13.38783 -13.22087 -13.05698 -12.81570 -12.70209 -12.56639 -12.37075 -12.34060 -12.18659 -11.61144 -11.26896 -10.90674 -10.35835 -10.26752 -10.14131 -9.94614 -9.79908 -8.98032 -8.38583 -6.68951 0.29239 0.38331 0.80272 0.94627 1.24270 1.40851 1.46709 2.08093 2.36654 2.68056 2.93718 3.48185 3.62824 3.67972 3.87072 4.02757 4.11365 4.21974 4.29851 4.34564 4.53364 4.57908 4.74237 4.76668 4.79243 4.80868 4.88425 4.89278 4.93407 4.99060 5.14981 5.22920 5.26628 5.35101 5.41553 5.46282 5.73928 5.85985 5.92074 6.22390 6.35523 6.64620 6.76045 6.95413 7.11093 7.72546 8.09600 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.007541 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.170400 B = 3711.946886 C = 4601.594457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.225 3.775 3 C -0.138 4.138 4 N -0.719 5.719 5 C 0.412 3.588 6 C -0.323 4.323 7 C 0.118 3.882 8 C -0.467 4.467 9 H 0.051 0.949 10 C 0.051 3.949 11 N -0.839 5.839 12 Si 0.974 3.026 13 H -0.254 1.254 14 H -0.282 1.282 15 H -0.254 1.254 16 C -0.336 4.336 17 C 0.149 3.851 18 N -0.621 5.621 19 C -0.047 4.047 20 C -0.144 4.144 21 C 0.075 3.925 22 N -0.512 5.512 23 C 0.082 3.918 24 C -0.166 4.166 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.405 0.595 32 H 0.114 0.886 33 H 0.296 0.704 34 H 0.102 0.898 35 H 0.158 0.842 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.179 0.821 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 14.270 0.706 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.137 3.863 3 C -0.196 4.196 4 N -0.355 5.355 5 C 0.180 3.820 6 C -0.349 4.349 7 C 0.110 3.890 8 C -0.498 4.498 9 H 0.069 0.931 10 C -0.166 4.166 11 N -0.465 5.465 12 Si 0.798 3.202 13 H -0.180 1.180 14 H -0.209 1.209 15 H -0.178 1.178 16 C -0.360 4.360 17 C -0.003 4.003 18 N -0.343 5.343 19 C -0.057 4.057 20 C -0.164 4.164 21 C -0.080 4.080 22 N -0.222 5.222 23 C -0.075 4.075 24 C -0.186 4.186 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.241 0.759 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.176 0.824 36 H 0.135 0.865 37 H 0.167 0.833 38 H 0.196 0.804 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.102 14.173 0.315 15.067 hybrid contribution -0.401 -1.167 0.410 1.300 sum 4.702 13.006 0.726 13.848 Atomic orbital electron populations 1.22388 0.93723 1.02355 1.03657 1.19192 0.93912 0.92482 0.80679 1.21994 1.01901 0.90783 1.04902 1.44418 1.61870 1.05194 1.23988 1.18076 0.89618 0.85572 0.88684 1.21496 1.17090 0.95203 1.01142 1.17890 0.86962 0.92942 0.91214 1.19412 1.25081 0.92456 1.12817 0.93069 1.26868 0.98397 0.97023 0.94300 1.69657 1.34633 1.07710 1.34506 0.85398 0.79299 0.77480 0.78032 1.17980 1.20946 1.17773 1.21542 1.16277 1.00582 0.97637 1.21780 0.92324 0.88464 0.97769 1.67009 1.32068 1.12599 1.22674 1.20742 0.93749 0.95087 0.96094 1.21917 0.98171 0.97141 0.99165 1.22731 0.99045 0.98023 0.88201 1.67595 1.11058 1.15850 1.27691 1.23189 0.92475 0.91583 1.00283 1.22200 1.01852 1.02569 0.91944 0.91241 0.88775 0.94266 0.91824 0.88550 0.89750 0.75866 0.86841 0.89333 0.88039 0.82442 0.86513 0.83286 0.80378 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 7.89 71.98 0.57 -3.57 16 2 C 0.22 5.67 0.91 2.85 0.00 5.67 16 3 C -0.14 -2.26 8.52 71.98 0.61 -1.65 16 4 N -0.72 -22.04 4.60 -308.50 -1.42 -23.46 16 5 C 0.41 16.71 5.86 132.90 0.78 17.49 16 6 C -0.32 -14.88 5.92 23.01 0.14 -14.74 16 7 C 0.12 6.13 5.25 -21.12 -0.11 6.02 16 8 C -0.47 -26.65 9.67 23.52 0.23 -26.43 16 9 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 10 C 0.05 2.75 5.47 85.29 0.47 3.22 16 11 N -0.84 -46.37 13.92 21.84 0.30 -46.06 16 12 Si 0.97 43.84 24.38 68.60 1.67 45.51 16 13 H -0.25 -10.68 6.73 99.48 0.67 -10.01 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.25 -11.76 6.53 99.48 0.65 -11.11 16 16 C -0.34 -16.13 7.06 22.60 0.16 -15.97 16 17 C 0.15 6.39 11.10 84.26 0.94 7.32 16 18 N -0.62 -26.25 10.37 -194.47 -2.02 -28.27 16 19 C -0.05 -1.40 2.61 -19.67 -0.05 -1.45 16 20 C -0.14 -5.02 7.05 22.36 0.16 -4.86 16 21 C 0.08 2.71 11.18 84.68 0.95 3.65 16 22 N -0.51 -18.10 10.36 -195.85 -2.03 -20.13 16 23 C 0.08 2.37 11.18 84.68 0.95 3.31 16 24 C -0.17 -4.31 9.22 22.36 0.21 -4.10 16 25 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.09 1.74 7.11 -2.38 -0.02 1.73 16 27 H 0.04 1.32 5.61 -2.39 -0.01 1.31 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.40 10.89 8.60 -92.71 -0.80 10.09 16 32 H 0.11 5.18 3.90 -2.91 -0.01 5.17 16 33 H 0.30 14.66 8.29 -92.71 -0.77 13.89 16 34 H 0.10 4.80 4.08 -2.91 -0.01 4.79 16 35 H 0.16 5.55 8.06 -2.91 -0.02 5.53 16 36 H 0.12 4.39 6.15 -2.91 -0.02 4.37 16 37 H 0.15 5.03 8.06 -2.91 -0.02 5.00 16 38 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.17 2.99 7.02 -2.91 -0.02 2.97 16 Total: -1.00 -66.77 308.46 2.69 -64.08 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.20 Total: 34.42 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 5.98 Total: -26.08 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -5.16 Total: -117.92 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.67 Total: 45.51 kcal Total: -66.77 2.69 -64.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160311898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.940 kcal (2) G-P(sol) polarization free energy of solvation -66.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds