Wall clock time and date at job start Tue Mar 31 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47512 * 75.10477 * 3 2 1 5 5 N 1.46502 * 109.47504 * 182.13156 * 4 3 2 6 6 C 1.46497 * 120.00185 * 270.85415 * 5 4 3 7 7 C 1.50700 * 109.47339 * 267.76211 * 6 5 4 8 8 H 1.08000 * 119.99524 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00267 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99546 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00258 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47130 * 60.00179 * 11 9 7 13 13 H 1.48500 * 109.47135 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47332 * 300.00255 * 11 9 7 15 15 C 1.34777 * 119.99594 * 90.85561 * 5 4 3 16 16 O 1.21282 * 120.00298 * 354.82695 * 15 5 4 17 17 C 1.50697 * 119.99661 * 175.10140 * 15 5 4 18 18 H 1.08999 * 109.52375 * 23.60506 * 17 15 5 19 19 C 1.53120 * 109.52511 * 263.47389 * 17 15 5 20 20 C 1.53043 * 109.27644 * 182.50439 * 19 17 15 21 21 N 1.46844 * 109.57624 * 59.08403 * 20 19 17 22 22 C 1.46849 * 111.20179 * 298.29226 * 21 20 19 23 23 C 1.53039 * 109.52210 * 61.73770 * 22 21 20 24 24 H 1.08997 * 109.53475 * 60.78615 * 23 22 21 25 25 F 1.39903 * 109.50234 * 180.88304 * 23 22 21 26 26 H 1.09004 * 109.47245 * 315.10221 * 3 2 1 27 27 H 1.09001 * 109.47380 * 195.10743 * 3 2 1 28 28 H 1.09001 * 109.47083 * 62.13234 * 4 3 2 29 29 H 1.09005 * 109.46879 * 302.13526 * 4 3 2 30 30 H 1.09003 * 109.46927 * 27.76218 * 6 5 4 31 31 H 1.08996 * 109.46978 * 147.75857 * 6 5 4 32 32 H 0.97008 * 119.99622 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.50468 * 302.38717 * 19 17 15 34 34 H 1.09003 * 109.49741 * 62.50269 * 19 17 15 35 35 H 1.09007 * 109.41028 * 299.07047 * 20 19 17 36 36 H 1.08998 * 109.45584 * 179.12673 * 20 19 17 37 37 H 1.00908 * 110.99772 * 62.38364 * 21 20 19 38 38 H 1.09002 * 109.45980 * 301.72426 * 22 21 20 39 39 H 1.09001 * 109.45398 * 181.74713 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.3699 -1.3940 5 7 4.5824 -0.4190 -1.3811 6 6 5.3584 0.7903 -1.6669 7 6 5.6727 0.8490 -3.1396 8 1 5.3292 0.0638 -3.7968 9 6 6.3989 1.9050 -3.6480 10 7 6.8167 2.8614 -2.8477 11 14 6.7892 1.9775 -5.4732 12 1 5.5234 2.0059 -6.2493 13 1 7.5746 3.2039 -5.7632 14 1 7.5791 0.7805 -5.8584 15 6 5.2153 -1.5767 -1.1062 16 8 4.5766 -2.5540 -0.7779 17 6 6.7173 -1.6550 -1.2009 18 1 7.1421 -0.6580 -1.0845 19 6 7.1150 -2.2247 -2.5654 20 6 8.6380 -2.3603 -2.6318 21 7 9.1004 -3.2467 -1.5562 22 6 8.7715 -2.6954 -0.2354 23 6 7.2525 -2.5713 -0.0969 24 1 6.7963 -3.5570 -0.1891 25 9 6.9404 -2.0273 1.1537 26 1 2.9717 -0.7272 0.7254 27 1 2.9709 0.9930 0.2678 28 1 2.7861 0.3787 -2.1133 29 1 2.7244 -1.3460 -1.6774 30 1 4.7791 1.6691 -1.3837 31 1 6.2876 0.7687 -1.0976 32 1 7.3280 3.6042 -3.2053 33 1 6.6572 -3.2050 -2.6980 34 1 6.7738 -1.5534 -3.3534 35 1 9.0947 -1.3776 -2.5140 36 1 8.9234 -2.7802 -3.5963 37 1 8.7213 -4.1755 -1.6649 38 1 9.2276 -1.7111 -0.1289 39 1 9.1539 -3.3588 0.5403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160751227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:36 Heat of formation + Delta-G solvation = -85.407438 kcal Electronic energy + Delta-G solvation = -23277.377904 eV Core-core repulsion = 19747.120934 eV Total energy + Delta-G solvation = -3530.256970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.65022 -41.18389 -38.94026 -37.91431 -36.81620 -34.72818 -33.41635 -31.98851 -31.23234 -29.02302 -26.41597 -25.06400 -24.32548 -23.69199 -21.80097 -20.03581 -18.82486 -18.32869 -18.18667 -17.60258 -16.99557 -16.57169 -16.45316 -16.29335 -16.03586 -15.89057 -15.39379 -15.03315 -14.61086 -14.32904 -14.22927 -13.82559 -13.74280 -13.62160 -13.46573 -13.25439 -13.08496 -12.97004 -12.80018 -12.72661 -12.54381 -12.15485 -12.02897 -11.86094 -11.76061 -11.64285 -11.34182 -10.81481 -10.48138 -9.55715 -9.43118 -8.14472 -6.26599 1.46984 1.50294 1.54238 1.55082 1.72954 1.73571 2.18733 2.46758 3.08218 3.18159 3.24349 3.46254 3.54827 3.66625 3.86759 3.97021 4.09261 4.11264 4.30551 4.42274 4.44121 4.48547 4.61581 4.74890 4.80718 4.87036 4.97522 4.97980 5.04725 5.13083 5.24336 5.33939 5.68345 5.82986 5.93531 6.10835 6.44350 6.48977 6.52203 6.84951 7.25505 7.45410 8.91072 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.008581 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.341538 B = 3262.139717 C = 5473.635758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.245 3.755 3 C -0.031 4.031 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.249 3.751 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.029 3.971 10 N -0.917 5.917 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.264 1.264 15 C 0.523 3.477 16 O -0.587 6.587 17 C -0.128 4.128 18 H 0.099 0.901 19 C -0.132 4.132 20 C 0.062 3.938 21 N -0.671 5.671 22 C 0.044 3.956 23 C 0.073 3.927 24 H 0.089 0.911 25 F -0.222 7.222 26 H 0.115 0.885 27 H 0.130 0.870 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.353 0.647 38 H 0.080 0.920 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -8.332 2.384 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.128 3.872 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.172 4.172 10 N -0.556 5.556 11 Si 0.769 3.231 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.189 1.189 15 C 0.312 3.688 16 O -0.469 6.469 17 C -0.150 4.150 18 H 0.117 0.883 19 C -0.171 4.171 20 C -0.068 4.068 21 N -0.299 5.299 22 C -0.087 4.087 23 C 0.034 3.966 24 H 0.107 0.893 25 F -0.203 7.203 26 H 0.133 0.867 27 H 0.148 0.852 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.172 0.828 38 H 0.099 0.901 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.434 -8.372 2.571 9.407 hybrid contribution -0.644 0.575 -0.852 1.213 sum 2.790 -7.797 1.720 8.457 Atomic orbital electron populations 1.81199 1.14139 1.11042 1.10063 1.29168 0.95017 0.91289 0.91747 1.19690 0.80272 1.06888 1.00402 1.21217 0.80293 1.03185 0.95491 1.48135 1.06228 1.10761 1.66995 1.19232 0.91038 0.81427 0.95460 1.21562 1.34568 1.07428 0.93905 0.92376 1.25483 0.95492 0.95109 1.01068 1.69988 1.37591 1.11452 1.36608 0.85834 0.78235 0.77733 0.81287 1.20404 1.21536 1.18853 1.20631 0.90557 0.82175 0.75416 1.90594 1.68883 1.37119 1.50285 1.21938 0.92382 1.02519 0.98148 0.88282 1.22112 0.99286 1.01291 0.94457 1.22051 0.90792 0.98154 0.95787 1.60707 1.61979 1.06278 1.00955 1.22619 0.89858 1.03006 0.93180 1.22487 0.99426 0.96845 0.77802 0.89301 1.92771 1.94690 1.88228 1.44583 0.86673 0.85232 0.89130 0.90551 0.94897 0.95194 0.92516 0.91256 0.90384 0.91147 0.88249 0.82822 0.90104 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.03 18.54 20.01 0.37 -15.66 16 2 C 0.24 6.90 15.43 89.44 1.38 8.28 16 3 C -0.03 -0.79 6.03 28.79 0.17 -0.62 16 4 C 0.12 3.77 5.32 86.38 0.46 4.23 16 5 N -0.59 -21.26 2.46 -826.16 -2.03 -23.29 16 6 C 0.25 10.25 4.86 85.63 0.42 10.67 16 7 C -0.54 -24.26 8.41 25.60 0.22 -24.04 16 8 H 0.06 2.65 7.36 -2.91 -0.02 2.63 16 9 C 0.03 1.39 5.46 84.65 0.46 1.85 16 10 N -0.92 -46.45 13.29 21.45 0.28 -46.17 16 11 Si 0.94 38.24 29.54 68.60 2.03 40.27 16 12 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 13 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 15 C 0.52 19.04 6.43 87.66 0.56 19.60 16 16 O -0.59 -23.17 15.87 -3.04 -0.05 -23.22 16 17 C -0.13 -4.14 1.90 -11.46 -0.02 -4.16 16 18 H 0.10 3.59 5.66 -2.39 -0.01 3.58 16 19 C -0.13 -3.78 5.35 30.65 0.16 -3.61 16 20 C 0.06 1.47 6.55 86.33 0.57 2.04 16 21 N -0.67 -13.97 6.87 -513.98 -3.53 -17.50 16 22 C 0.04 0.99 6.29 86.33 0.54 1.53 16 23 C 0.07 2.05 3.13 30.65 0.10 2.15 16 24 H 0.09 2.46 7.78 -2.39 -0.02 2.44 16 25 F -0.22 -7.20 16.86 44.97 0.76 -6.45 16 26 H 0.12 2.88 8.14 -2.38 -0.02 2.87 16 27 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 29 H 0.08 2.42 7.47 -2.38 -0.02 2.40 16 30 H 0.03 1.41 8.06 -2.39 -0.02 1.40 16 31 H 0.03 1.32 5.99 -2.39 -0.01 1.31 16 32 H 0.27 13.04 8.31 -92.70 -0.77 12.27 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.61 6.72 -2.39 -0.02 2.59 16 35 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.35 6.11 8.86 -89.69 -0.79 5.32 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -56.52 331.18 3.13 -53.39 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.28 Total: 20.71 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.02 Total: 17.92 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -4.91 Total: -102.62 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.76 Total: -6.45 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -56.52 3.13 -53.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160751227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.018 kcal (2) G-P(sol) polarization free energy of solvation -56.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds