Wall clock time and date at job start Tue Mar 31 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32236 * 120.40576 * 2 1 4 4 C 1.32531 * 120.74648 * 179.97438 * 3 2 1 5 5 N 1.38440 * 119.21387 * 180.02562 * 4 3 2 6 6 C 1.36985 * 119.99676 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00490 * 359.71694 * 6 5 4 8 8 C 1.38840 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.31536 * 119.99973 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99834 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47347 * 59.99630 * 10 8 6 12 12 H 1.48503 * 109.46845 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47035 * 299.99587 * 10 8 6 14 14 N 1.32535 * 121.56704 * 0.26977 * 4 3 2 15 15 C 1.32230 * 120.74285 * 359.44611 * 14 4 3 16 16 C 1.50703 * 120.40492 * 180.27291 * 15 14 4 17 17 C 1.38661 * 120.40350 * 179.97438 * 2 1 3 18 18 C 1.50701 * 120.72076 * 0.04415 * 17 2 1 19 19 C 1.50696 * 109.46948 * 90.00074 * 18 17 2 20 20 C 1.38232 * 119.99974 * 269.72537 * 19 18 17 21 21 C 1.38237 * 119.99814 * 179.76634 * 20 19 18 22 22 C 1.38237 * 120.00345 * 0.48759 * 21 20 19 23 23 C 1.38242 * 119.99413 * 359.78885 * 22 21 20 24 24 C 1.38229 * 120.00080 * 359.95801 * 23 22 21 25 25 H 1.09000 * 109.47115 * 90.00083 * 1 2 3 26 26 H 1.09001 * 109.47275 * 210.00285 * 1 2 3 27 27 H 1.09000 * 109.47066 * 330.00219 * 1 2 3 28 28 H 0.96999 * 120.00271 * 359.97438 * 5 4 3 29 29 H 0.97000 * 120.00585 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.46883 * 270.27307 * 16 15 14 31 31 H 1.09000 * 109.47094 * 30.26771 * 16 15 14 32 32 H 1.08990 * 109.47196 * 150.27388 * 16 15 14 33 33 H 1.08999 * 109.46887 * 209.99936 * 18 17 2 34 34 H 1.08997 * 109.46777 * 329.99977 * 18 17 2 35 35 H 1.07998 * 119.99995 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.99910 * 180.25169 * 21 20 19 37 37 H 1.07995 * 120.00642 * 179.76425 * 22 21 20 38 38 H 1.08001 * 119.99236 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.99733 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1762 1.1405 0.0000 4 6 3.5015 1.1484 0.0005 5 7 4.1700 2.3607 0.0010 6 6 5.5396 2.3875 0.0010 7 1 6.0979 1.4631 0.0052 8 6 6.2101 3.6033 0.0010 9 7 5.5302 4.7293 0.0005 10 14 8.0777 3.6399 0.0017 11 1 8.5868 2.9494 -1.2103 12 1 8.5451 5.0495 0.0022 13 1 8.5858 2.9501 1.2147 14 7 4.2020 0.0233 -0.0043 15 6 3.5946 -1.1512 0.0012 16 6 4.3987 -2.4258 0.0019 17 6 2.2087 -1.1959 0.0005 18 6 1.4810 -2.5156 0.0001 19 6 1.2394 -2.9555 -1.4208 20 6 0.0777 -2.5839 -2.0713 21 6 -0.1417 -2.9834 -3.3764 22 6 0.7959 -3.7629 -4.0276 23 6 1.9551 -4.1393 -3.3750 24 6 2.1768 -3.7354 -2.0718 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 3.6686 3.1910 0.0006 29 1 5.9985 5.5788 0.0001 30 1 4.5930 -2.7333 -1.0256 31 1 5.3451 -2.2580 0.5160 32 1 3.8397 -3.2078 0.5157 33 1 2.0845 -3.2634 0.5144 34 1 0.5259 -2.4039 0.5133 35 1 -0.6566 -1.9779 -1.5614 36 1 -1.0475 -2.6897 -3.8860 37 1 0.6228 -4.0783 -5.0459 38 1 2.6874 -4.7487 -3.8837 39 1 3.0826 -4.0291 -1.5622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:09 Heat of formation + Delta-G solvation = 50.762860 kcal Electronic energy + Delta-G solvation = -21482.924808 eV Core-core repulsion = 18389.341850 eV Total energy + Delta-G solvation = -3093.582958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.74503 -39.93494 -37.54626 -35.41332 -35.21392 -33.41480 -31.71225 -31.37519 -30.04106 -28.87977 -27.26102 -25.82225 -23.31267 -23.11010 -22.43797 -21.59709 -19.84073 -18.27183 -18.01163 -17.62985 -16.33512 -16.20839 -15.87585 -15.82330 -15.50911 -15.33799 -14.56399 -14.45344 -14.21622 -14.19464 -13.67059 -13.50476 -13.47261 -13.31318 -13.24456 -12.94730 -12.93211 -12.47298 -12.39685 -12.13539 -12.08753 -11.70129 -11.58005 -11.39853 -10.94463 -10.55343 -9.68936 -9.59177 -9.46960 -8.93032 -8.52247 -5.83230 0.45522 0.63259 0.66595 0.69798 1.39176 1.48243 1.51984 2.21675 2.80004 2.85470 3.02701 3.41901 3.58779 3.84699 4.04111 4.14280 4.22328 4.30182 4.37176 4.39891 4.54339 4.64218 4.70141 4.74554 4.76016 4.79414 4.87918 4.93679 5.01434 5.16069 5.23703 5.26908 5.30926 5.38756 5.41878 5.69741 5.71481 5.73982 5.89745 6.08944 6.27770 6.62928 6.70653 7.18229 7.38685 8.03247 8.66158 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.004213 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.049187 B = 6644.749775 C = 7075.427794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.208 3.792 3 N -0.627 5.627 4 C 0.496 3.504 5 N -0.536 5.536 6 C -0.304 4.304 7 H 0.103 0.897 8 C -0.028 4.028 9 N -0.928 5.928 10 Si 1.007 2.993 11 H -0.267 1.267 12 H -0.275 1.275 13 H -0.266 1.266 14 N -0.607 5.607 15 C 0.206 3.794 16 C -0.099 4.099 17 C -0.298 4.298 18 C -0.008 4.008 19 C -0.077 4.077 20 C -0.133 4.133 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.133 4.133 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.400 0.600 29 H 0.278 0.722 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -18.395 -3.263 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.058 3.942 3 N -0.355 5.355 4 C 0.140 3.860 5 N -0.150 5.150 6 C -0.435 4.435 7 H 0.121 0.879 8 C -0.227 4.227 9 N -0.567 5.567 10 Si 0.830 3.170 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.191 1.191 14 N -0.335 5.335 15 C 0.055 3.945 16 C -0.156 4.156 17 C -0.309 4.309 18 C -0.046 4.046 19 C -0.077 4.077 20 C -0.151 4.151 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.149 4.149 24 C -0.151 4.151 25 H 0.107 0.893 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.235 0.765 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.760 -17.115 -3.260 19.502 hybrid contribution 0.336 0.517 -0.126 0.629 sum -8.425 -16.599 -3.386 18.920 Atomic orbital electron populations 1.20905 0.86490 1.04356 1.03793 1.21720 0.97910 0.87016 0.87550 1.67638 1.07436 1.32427 1.27973 1.19409 0.85341 0.87025 0.94199 1.40484 1.06259 1.02822 1.65464 1.19968 0.80822 0.94921 1.47771 0.87876 1.26301 1.05819 0.93823 0.96751 1.69784 1.38628 0.98302 1.50017 0.84772 0.75424 0.77548 0.79301 1.19195 1.19971 1.19059 1.67716 1.41227 0.98032 1.26488 1.21816 0.92034 0.93188 0.87419 1.20898 0.99435 0.91551 1.03693 1.20528 0.94208 0.96713 1.19471 1.19243 1.00739 0.91845 0.92736 1.20051 0.94473 0.96502 0.96713 1.21389 0.97867 1.00285 0.95511 1.21427 1.00139 0.98300 0.95046 1.21413 0.94674 0.99123 1.00684 1.21422 0.98002 1.00468 0.95055 1.21388 0.99420 0.98751 0.95561 0.89276 0.87374 0.91140 0.76486 0.91294 0.89379 0.91351 0.87364 0.88882 0.88756 0.84788 0.84625 0.84715 0.84717 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.54 8.85 71.23 0.63 -1.91 16 2 C 0.21 7.75 6.82 42.60 0.29 8.04 16 3 N -0.63 -29.86 10.40 -185.94 -1.93 -31.80 16 4 C 0.50 26.20 8.38 261.43 2.19 28.39 16 5 N -0.54 -30.65 5.43 -194.34 -1.05 -31.70 16 6 C -0.30 -17.52 9.69 84.03 0.81 -16.71 16 7 H 0.10 5.96 7.05 -2.91 -0.02 5.94 16 8 C -0.03 -1.51 5.50 84.88 0.47 -1.04 16 9 N -0.93 -53.15 13.05 21.65 0.28 -52.87 16 10 Si 1.01 43.35 29.55 68.60 2.03 45.37 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 14 N -0.61 -29.82 9.04 -185.94 -1.68 -31.51 16 15 C 0.21 7.86 6.82 42.60 0.29 8.15 16 16 C -0.10 -2.68 8.83 71.24 0.63 -2.05 16 17 C -0.30 -9.92 5.15 -19.66 -0.10 -10.03 16 18 C -0.01 -0.17 4.75 29.10 0.14 -0.04 16 19 C -0.08 -1.78 5.11 -19.87 -0.10 -1.88 16 20 C -0.13 -2.87 9.48 22.27 0.21 -2.66 16 21 C -0.13 -2.65 10.05 22.27 0.22 -2.43 16 22 C -0.14 -2.79 10.05 22.27 0.22 -2.57 16 23 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 24 C -0.13 -2.94 9.48 22.27 0.21 -2.72 16 25 H 0.09 2.07 7.21 -2.39 -0.02 2.06 16 26 H 0.11 2.01 6.05 -2.39 -0.01 1.99 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.40 23.51 8.01 -92.71 -0.74 22.76 16 29 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.09 2.18 7.19 -2.39 -0.02 2.16 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 2.12 6.04 -2.39 -0.01 2.11 16 33 H 0.09 1.76 6.02 -2.39 -0.01 1.74 16 34 H 0.09 1.75 6.02 -2.39 -0.01 1.73 16 35 H 0.13 2.42 6.23 -2.91 -0.02 2.40 16 36 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.13 2.49 6.19 -2.91 -0.02 2.48 16 Total: -1.00 -70.68 322.58 4.33 -66.35 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.35 Total: 38.06 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 6.34 Total: -1.91 kcal Atomic # 7 Polarization: -143.49 SS G_CDS: -4.39 Total: -147.87 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.68 4.33 -66.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.112 kcal (2) G-P(sol) polarization free energy of solvation -70.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds