Wall clock time and date at job start Tue Mar 31 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39681 * 119.99628 * 2 1 4 4 C 1.38913 * 120.07193 * 180.02562 * 3 2 1 5 5 C 1.38104 * 119.92195 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.07393 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.92053 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47247 * 89.99701 * 7 6 5 9 9 C 1.38091 * 120.00132 * 179.97438 * 8 7 6 10 10 N 1.32274 * 119.90449 * 0.02562 * 9 8 7 11 11 C 1.31965 * 121.86572 * 180.02562 * 10 9 8 12 12 C 1.38680 * 121.44881 * 359.97438 * 11 10 9 13 13 C 1.38007 * 119.62692 * 0.25328 * 12 11 10 14 14 C 1.40997 * 118.28073 * 359.53446 * 13 12 11 15 15 C 1.41018 * 120.70797 * 180.19076 * 14 13 12 16 16 H 1.07999 * 120.00597 * 205.19511 * 15 14 13 17 17 C 1.39958 * 119.99742 * 25.19786 * 15 14 13 18 18 N 1.30867 * 120.00017 * 14.21468 * 17 15 14 19 19 Si 1.86797 * 119.99855 * 194.21335 * 17 15 14 20 20 H 1.48496 * 109.47447 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47163 * 120.00267 * 19 17 15 22 22 H 1.48500 * 109.46825 * 239.99862 * 19 17 15 23 23 C 1.38282 * 120.15152 * 0.26722 * 6 5 4 24 24 C 1.38102 * 120.07633 * 359.45776 * 23 6 5 25 25 H 1.08999 * 109.46901 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47462 * 299.99419 * 1 2 3 27 27 H 1.08996 * 109.47540 * 59.99713 * 1 2 3 28 28 H 0.96996 * 119.99914 * 180.02562 * 2 1 3 29 29 H 1.07998 * 120.03749 * 0.02562 * 4 3 2 30 30 H 1.07995 * 119.95708 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47171 * 329.99308 * 7 6 5 32 32 H 1.08997 * 109.46810 * 209.99608 * 7 6 5 33 33 H 0.97003 * 120.00564 * 359.97438 * 8 7 6 34 34 H 1.08002 * 119.27368 * 180.02562 * 11 10 9 35 35 H 1.08004 * 120.18863 * 179.97438 * 12 11 10 36 36 H 1.08004 * 120.85752 * 179.74742 * 13 12 11 37 37 H 0.96994 * 120.00235 * 180.02562 * 18 17 15 38 38 H 1.08005 * 119.96111 * 179.70731 * 23 6 5 39 39 H 1.07998 * 120.04128 * 180.27877 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2097 0.0000 4 6 3.5525 1.2115 -0.0005 5 6 4.2398 2.4094 0.0000 6 6 3.5467 3.6060 0.0016 7 6 4.3002 4.9111 0.0028 8 7 4.5439 5.3356 -1.3780 9 6 5.2222 6.5119 -1.6293 10 7 5.6515 7.2537 -0.6218 11 6 6.3030 8.3845 -0.8174 12 6 6.5716 8.8532 -2.0946 13 6 6.1471 8.1294 -3.1903 14 6 5.4564 6.9209 -2.9657 15 6 5.0031 6.1386 -4.0480 16 1 4.1634 5.4720 -3.9182 17 6 5.6416 6.2261 -5.2903 18 7 6.8108 6.8061 -5.3858 19 14 4.8248 5.5149 -6.8123 20 1 3.5172 4.9181 -6.4393 21 1 4.6094 6.5946 -7.8088 22 1 5.6984 4.4670 -7.3989 23 6 2.1639 3.6077 0.0083 24 6 1.4703 2.4136 0.0020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.9500 -0.8400 -0.0004 29 1 4.0943 0.2773 -0.0014 30 1 5.3197 2.4115 0.0000 31 1 5.2527 4.7803 0.5162 32 1 3.7113 5.6702 0.5176 33 1 4.2288 4.7903 -2.1159 34 1 6.6350 8.9572 0.0360 35 1 7.1062 9.7817 -2.2312 36 1 6.3420 8.4779 -4.1938 37 1 7.2532 6.8671 -6.2468 38 1 1.6257 4.5441 0.0143 39 1 0.3903 2.4156 0.0027 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164149151.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:35 Heat of formation + Delta-G solvation = 58.516963 kcal Electronic energy + Delta-G solvation = -20884.629818 eV Core-core repulsion = 17791.383103 eV Total energy + Delta-G solvation = -3093.246715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.46041 -38.33894 -36.07666 -34.07885 -33.89275 -30.88798 -30.49116 -30.29816 -28.33157 -26.38380 -25.27051 -24.11375 -22.40042 -21.46397 -20.71273 -20.26674 -17.50910 -17.18690 -16.64116 -16.01380 -15.34875 -15.06847 -14.52217 -14.39251 -14.21862 -13.88608 -13.64734 -13.29757 -12.95995 -12.95827 -12.80716 -12.33534 -12.23288 -11.88409 -11.74311 -11.40278 -11.23404 -10.96824 -10.82297 -10.75050 -10.47181 -10.01325 -9.68376 -9.27604 -8.87459 -8.75614 -8.02776 -7.83802 -7.34522 -6.72422 -6.42004 -4.17620 1.60862 1.68907 2.78625 3.09740 3.14624 3.16575 3.29967 3.37736 3.95578 3.96955 4.73772 4.81245 4.89491 5.02808 5.12225 5.24660 5.27524 5.46891 5.58511 5.64917 5.80857 5.85077 6.10538 6.15505 6.26928 6.39747 6.44297 6.51534 6.57423 6.84651 6.93607 6.95858 7.02821 7.19310 7.24746 7.34490 7.61609 7.74510 7.88413 8.07509 8.36786 8.62625 8.74182 8.85574 9.09131 9.86455 10.27010 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.015008 B = 0.004508 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.224527 B = 6209.476057 C = 7643.162512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.758 5.758 3 C 0.207 3.793 4 C -0.198 4.198 5 C -0.054 4.054 6 C -0.148 4.148 7 C 0.191 3.809 8 N -0.726 5.726 9 C 0.307 3.693 10 N -0.535 5.535 11 C 0.004 3.996 12 C -0.194 4.194 13 C -0.125 4.125 14 C 0.030 3.970 15 C -0.454 4.454 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.802 5.802 19 Si 0.906 3.094 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.276 1.276 23 C -0.055 4.055 24 C -0.199 4.199 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.398 0.602 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.403 0.597 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.278 0.722 38 H 0.121 0.879 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.049 -11.209 6.785 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.388 5.388 3 C 0.105 3.895 4 C -0.220 4.220 5 C -0.073 4.073 6 C -0.150 4.150 7 C 0.066 3.934 8 N -0.365 5.365 9 C 0.069 3.931 10 N -0.253 5.253 11 C -0.150 4.150 12 C -0.217 4.217 13 C -0.152 4.152 14 C 0.023 3.977 15 C -0.485 4.485 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.428 5.428 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.074 4.074 24 C -0.222 4.222 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.231 0.769 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.239 0.761 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.215 -11.348 7.660 16.504 hybrid contribution 0.008 -0.554 -1.950 2.027 sum -9.207 -11.902 5.711 16.095 Atomic orbital electron populations 1.21479 0.80535 1.01948 1.01048 1.44387 1.05470 1.05342 1.83641 1.17825 0.91156 0.86137 0.94332 1.20536 0.91890 0.98435 1.11130 1.20860 0.99694 0.91247 0.95479 1.19920 0.93727 0.95279 1.06090 1.19692 0.97585 0.90582 0.85520 1.43809 1.64061 1.23181 1.05473 1.18526 0.97121 0.88152 0.89288 1.66568 1.15917 1.07847 1.34963 1.21362 1.03902 0.94870 0.94862 1.21408 1.05098 1.00823 0.94369 1.21399 1.01977 0.93743 0.98037 1.17931 0.95902 0.93374 0.90529 1.19185 1.13796 1.21606 0.93934 0.90754 1.25798 0.93840 0.94175 1.00379 1.69810 1.11693 1.34988 1.26354 0.86293 0.80345 0.79189 0.81074 1.18546 1.19871 1.20143 1.20867 0.93613 0.97308 0.95627 1.20572 0.99272 0.91150 1.11162 0.91216 0.93149 0.93076 0.76852 0.86545 0.85963 0.92833 0.92863 0.76053 0.86583 0.88844 0.85546 0.91133 0.86066 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 9.94 59.85 0.60 1.29 16 2 N -0.76 -7.16 5.89 -65.39 -0.39 -7.55 16 3 C 0.21 2.57 6.65 -83.78 -0.56 2.01 16 4 C -0.20 -2.53 9.90 -39.38 -0.39 -2.92 16 5 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 6 C -0.15 -2.31 5.25 -104.59 -0.55 -2.86 16 7 C 0.19 3.50 5.80 -5.20 -0.03 3.47 16 8 N -0.73 -15.66 5.60 -61.15 -0.34 -16.00 16 9 C 0.31 7.73 7.52 -155.02 -1.17 6.57 16 10 N -0.54 -13.35 9.54 -11.86 -0.11 -13.46 16 11 C 0.00 0.08 11.17 -17.33 -0.19 -0.11 16 12 C -0.19 -4.70 10.08 -39.50 -0.40 -5.10 16 13 C -0.13 -3.32 8.79 -38.62 -0.34 -3.66 16 14 C 0.03 0.80 5.60 -106.47 -0.60 0.20 16 15 C -0.45 -11.83 8.53 -37.88 -0.32 -12.15 16 16 H 0.07 1.85 6.67 -52.49 -0.35 1.50 16 17 C 0.07 1.86 5.23 -17.32 -0.09 1.77 16 18 N -0.80 -20.82 10.83 55.55 0.60 -20.22 16 19 Si 0.91 18.79 29.58 -169.99 -5.03 13.76 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 C -0.05 -0.79 9.69 -39.62 -0.38 -1.17 16 24 C -0.20 -2.57 9.31 -39.38 -0.37 -2.93 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.36 7.95 -51.93 -0.41 -0.05 16 27 H 0.05 0.39 7.95 -51.93 -0.41 -0.02 16 28 H 0.40 3.03 8.84 -40.82 -0.36 2.67 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.05 0.99 8.08 -51.93 -0.42 0.58 16 33 H 0.40 8.59 6.66 -40.82 -0.27 8.32 16 34 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.09 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.13 3.43 6.18 -52.48 -0.32 3.11 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.12 1.29 6.73 -52.49 -0.35 0.94 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -29.54 329.80 -10.47 -40.00 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.00 Total: 15.26 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -5.17 Total: -16.75 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.24 Total: -57.24 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.54 -10.47 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164149151.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.521 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds