Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38684 * 119.27625 * 2 1 4 4 C 1.38011 * 119.62615 * 179.71456 * 3 2 1 5 5 C 1.40997 * 118.28210 * 0.52060 * 4 3 2 6 6 C 1.41012 * 120.70665 * 179.75685 * 5 4 3 7 7 H 1.08007 * 119.99908 * 211.12267 * 6 5 4 8 8 C 1.39946 * 120.00030 * 31.12258 * 6 5 4 9 9 N 1.30864 * 120.00126 * 25.48430 * 8 6 5 10 10 Si 1.86804 * 119.99843 * 205.20805 * 8 6 5 11 11 H 1.48498 * 109.47227 * 270.27556 * 10 8 6 12 12 H 1.48497 * 109.47056 * 30.27770 * 10 8 6 13 13 H 1.48501 * 109.46819 * 150.27217 * 10 8 6 14 14 C 1.41708 * 118.58601 * 359.48256 * 5 4 3 15 15 N 1.38086 * 119.90365 * 180.27597 * 14 5 4 16 16 C 1.46953 * 111.00254 * 196.47012 * 15 14 5 17 17 C 1.53350 * 109.79936 * 164.64873 * 16 15 14 18 18 N 1.46797 * 108.21615 * 50.17401 * 17 16 15 19 19 C 1.35726 * 128.03238 * 163.32846 * 18 17 16 20 20 C 1.35067 * 108.16616 * 180.28442 * 19 18 17 21 21 C 1.41109 * 107.48668 * 359.93581 * 20 19 18 22 22 C 1.34123 * 107.32103 * 359.95454 * 21 20 19 23 23 C 1.47356 * 111.00069 * 72.30921 * 15 14 5 24 24 N 1.31962 * 119.27699 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47770 * 270.02886 * 1 2 3 26 26 H 1.09000 * 109.47093 * 30.02699 * 1 2 3 27 27 H 1.08997 * 109.47168 * 150.02377 * 1 2 3 28 28 H 1.08000 * 120.18691 * 359.97000 * 3 2 1 29 29 H 1.08003 * 120.85584 * 180.30182 * 4 3 2 30 30 H 0.97001 * 119.99809 * 5.50972 * 9 8 6 31 31 H 1.09001 * 109.41680 * 284.74021 * 16 15 14 32 32 H 1.09006 * 109.41760 * 44.53558 * 16 15 14 33 33 H 1.09002 * 109.68636 * 290.50865 * 17 16 15 34 34 H 1.09002 * 109.77051 * 169.89352 * 17 16 15 35 35 H 1.08001 * 125.91926 * 0.30473 * 19 18 17 36 36 H 1.08001 * 126.25655 * 179.97438 * 20 19 18 37 37 H 1.07993 * 126.33873 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.75625 * 293.84094 * 23 15 14 39 39 H 1.08993 * 109.75332 * 54.58971 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0060 5 6 4.2409 -0.0194 0.0006 6 6 5.6501 -0.0704 0.0012 7 1 6.1610 -0.8879 -0.4858 8 6 6.3865 0.9382 0.6327 9 7 5.8518 1.6245 1.6103 10 14 8.1356 1.2998 0.0853 11 1 9.0812 0.4584 0.8618 12 1 8.2746 0.9945 -1.3613 13 1 8.4412 2.7339 0.3201 14 6 3.4737 -1.2108 0.0007 15 7 4.1073 -2.4377 0.0013 16 6 3.1803 -3.5095 -0.3877 17 6 3.9699 -4.7733 -0.7495 18 7 4.9180 -5.0487 0.3369 19 6 5.5843 -6.2032 0.5927 20 6 6.3457 -6.0152 1.6924 21 6 6.1394 -4.6894 2.1293 22 6 5.2661 -4.1218 1.2843 23 6 4.7206 -2.7147 1.3122 24 7 2.1523 -1.1511 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6364 2.1399 -0.0005 29 1 4.1134 2.1487 0.0110 30 1 4.9764 1.3823 1.9507 31 1 2.5090 -3.7272 0.4429 32 1 2.5959 -3.1879 -1.2499 33 1 4.5138 -4.6126 -1.6803 34 1 3.2866 -5.6149 -0.8635 35 1 5.5176 -7.1142 0.0166 36 1 6.9944 -6.7458 2.1527 37 1 6.5998 -4.2188 2.9854 38 1 5.5307 -2.0091 1.4965 39 1 3.9688 -2.6266 2.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166602371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = 86.114749 kcal Electronic energy + Delta-G solvation = -22312.018593 eV Core-core repulsion = 19219.968607 eV Total energy + Delta-G solvation = -3092.049985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13426 -39.13004 -36.38374 -34.60389 -32.93539 -30.96919 -30.71752 -28.95769 -28.16542 -27.26669 -24.74242 -23.84113 -22.71574 -20.76363 -20.69889 -19.96238 -18.17482 -17.96658 -16.90997 -15.72977 -15.41773 -15.29133 -14.51525 -14.15197 -14.01822 -13.54227 -13.23111 -13.17386 -12.99911 -12.78143 -12.56626 -11.94875 -11.90885 -11.74962 -11.65004 -11.56092 -11.42482 -11.08580 -11.04993 -10.90079 -10.78199 -10.45704 -9.78004 -9.23657 -8.89177 -8.34267 -8.26842 -8.15760 -7.64918 -7.42520 -7.06345 -4.52300 2.42583 2.63755 2.66695 3.12694 3.20613 3.27227 3.32785 3.39089 3.94027 4.32658 4.48510 4.94951 5.11471 5.21285 5.35716 5.38154 5.49222 5.60617 5.82825 5.89922 5.91840 6.01558 6.08965 6.13002 6.21290 6.25823 6.35071 6.39328 6.52869 6.61513 6.65656 6.75628 6.86123 7.18922 7.29009 7.40428 7.56560 7.62389 7.65131 7.76354 7.83052 7.93175 8.14548 8.63613 8.67639 9.36715 9.91056 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.007889 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.459866 B = 3548.206370 C = 5426.199400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.010 4.010 3 C -0.135 4.135 4 C -0.178 4.178 5 C 0.065 3.935 6 C -0.489 4.489 7 H 0.090 0.910 8 C 0.038 3.962 9 N -0.790 5.790 10 Si 1.064 2.936 11 H -0.274 1.274 12 H -0.274 1.274 13 H -0.274 1.274 14 C 0.172 3.828 15 N -0.452 5.452 16 C 0.058 3.942 17 C 0.109 3.891 18 N -0.442 5.442 19 C -0.021 4.021 20 C -0.206 4.206 21 C -0.201 4.201 22 C 0.036 3.964 23 C 0.128 3.872 24 N -0.487 5.487 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.296 0.704 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -7.693 -1.767 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.148 4.148 3 C -0.156 4.156 4 C -0.204 4.204 5 C 0.058 3.942 6 C -0.517 4.517 7 H 0.108 0.892 8 C -0.185 4.185 9 N -0.412 5.412 10 Si 0.887 3.113 11 H -0.200 1.200 12 H -0.199 1.199 13 H -0.199 1.199 14 C -0.062 4.062 15 N -0.171 5.171 16 C -0.071 4.071 17 C -0.013 4.013 18 N -0.118 5.118 19 C -0.151 4.151 20 C -0.231 4.231 21 C -0.226 4.226 22 C -0.076 4.076 23 C 0.001 3.999 24 N -0.200 5.200 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.132 0.868 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.646 -7.359 -2.109 7.682 hybrid contribution -1.472 -0.295 0.222 1.517 sum -2.117 -7.654 -1.887 8.162 Atomic orbital electron populations 1.20256 0.91471 1.00803 1.00428 1.19983 0.94591 0.88041 1.12203 1.21323 0.94938 0.97138 1.02160 1.21358 0.93138 0.97533 1.08366 1.17995 0.94234 0.89852 0.92117 1.20460 0.91017 1.09379 1.30884 0.89234 1.27103 1.06870 0.91567 0.92930 1.70480 1.18682 1.35203 1.16837 0.83647 0.72780 0.77644 0.77197 1.19956 1.19898 1.19867 1.19282 0.87041 0.89374 1.10550 1.59143 1.30979 0.99934 1.27094 1.22071 0.93278 0.89622 1.02098 1.22179 0.91169 0.98330 0.89578 1.44181 1.34531 1.10258 1.22858 1.21533 1.01275 0.90714 1.01592 1.20828 1.05504 0.97404 0.99412 1.20363 1.03936 0.95556 1.02715 1.20554 1.02164 0.91963 0.92936 1.20868 0.99413 0.90458 0.89118 1.66723 1.09866 1.30274 1.13125 0.93246 0.92887 0.92754 0.88177 0.86942 0.89077 0.93571 0.88788 0.89911 0.89827 0.82740 0.85173 0.84959 0.86822 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.15 36.00 0.37 -0.88 16 2 C -0.01 -0.22 6.79 -82.37 -0.56 -0.78 16 3 C -0.13 -2.98 9.69 -39.50 -0.38 -3.36 16 4 C -0.18 -4.30 8.16 -38.62 -0.32 -4.62 16 5 C 0.06 1.61 5.10 -106.48 -0.54 1.07 16 6 C -0.49 -12.12 6.79 -37.89 -0.26 -12.38 16 7 H 0.09 2.27 7.80 -52.48 -0.41 1.86 16 8 C 0.04 0.90 4.93 -17.32 -0.09 0.81 16 9 N -0.79 -19.75 12.57 55.55 0.70 -19.05 16 10 Si 1.06 20.89 30.00 -169.99 -5.10 15.79 16 11 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 12 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 13 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 14 C 0.17 4.07 6.00 -155.03 -0.93 3.14 16 15 N -0.45 -9.61 4.11 -173.27 -0.71 -10.33 16 16 C 0.06 1.04 4.73 -3.61 -0.02 1.03 16 17 C 0.11 1.63 7.23 -3.70 -0.03 1.60 16 18 N -0.44 -7.44 3.15 -112.15 -0.35 -7.79 16 19 C -0.02 -0.32 11.55 -16.96 -0.20 -0.51 16 20 C -0.21 -3.20 10.87 -39.62 -0.43 -3.63 16 21 C -0.20 -3.53 10.81 -39.94 -0.43 -3.96 16 22 C 0.04 0.68 6.64 -81.60 -0.54 0.14 16 23 C 0.13 2.66 5.49 -4.61 -0.03 2.63 16 24 N -0.49 -11.21 8.70 -8.11 -0.07 -11.29 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.11 2.76 7.04 -52.48 -0.37 2.39 16 30 H 0.30 7.65 6.95 -40.82 -0.28 7.36 16 31 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.09 1.71 7.63 -51.93 -0.40 1.31 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.11 2.55 6.50 -51.93 -0.34 2.21 16 39 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -27.24 319.77 -10.33 -37.57 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.23 Total: 9.96 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -4.38 Total: -19.69 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.44 Total: -48.45 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.10 Total: 15.79 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.24 -10.33 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166602371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.683 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds