Wall clock time and date at job start Tue Mar 31 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38684 * 119.27625 * 2 1 4 4 C 1.38011 * 119.62615 * 179.71456 * 3 2 1 5 5 C 1.40997 * 118.28210 * 0.52060 * 4 3 2 6 6 C 1.41012 * 120.70665 * 179.75685 * 5 4 3 7 7 H 1.08007 * 119.99908 * 211.12267 * 6 5 4 8 8 C 1.39946 * 120.00030 * 31.12258 * 6 5 4 9 9 N 1.30864 * 120.00126 * 25.48430 * 8 6 5 10 10 Si 1.86804 * 119.99843 * 205.20805 * 8 6 5 11 11 H 1.48498 * 109.47227 * 270.27556 * 10 8 6 12 12 H 1.48497 * 109.47056 * 30.27770 * 10 8 6 13 13 H 1.48501 * 109.46819 * 150.27217 * 10 8 6 14 14 C 1.41708 * 118.58601 * 359.48256 * 5 4 3 15 15 N 1.38086 * 119.90365 * 180.27597 * 14 5 4 16 16 C 1.46953 * 111.00254 * 196.47012 * 15 14 5 17 17 C 1.53350 * 109.79936 * 164.64873 * 16 15 14 18 18 N 1.46797 * 108.21615 * 50.17401 * 17 16 15 19 19 C 1.35726 * 128.03238 * 163.32846 * 18 17 16 20 20 C 1.35067 * 108.16616 * 180.28442 * 19 18 17 21 21 C 1.41109 * 107.48668 * 359.93581 * 20 19 18 22 22 C 1.34123 * 107.32103 * 359.95454 * 21 20 19 23 23 C 1.47356 * 111.00069 * 72.30921 * 15 14 5 24 24 N 1.31962 * 119.27699 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47770 * 270.02886 * 1 2 3 26 26 H 1.09000 * 109.47093 * 30.02699 * 1 2 3 27 27 H 1.08997 * 109.47168 * 150.02377 * 1 2 3 28 28 H 1.08000 * 120.18691 * 359.97000 * 3 2 1 29 29 H 1.08003 * 120.85584 * 180.30182 * 4 3 2 30 30 H 0.97001 * 119.99809 * 5.50972 * 9 8 6 31 31 H 1.09001 * 109.41680 * 284.74021 * 16 15 14 32 32 H 1.09006 * 109.41760 * 44.53558 * 16 15 14 33 33 H 1.09002 * 109.68636 * 290.50865 * 17 16 15 34 34 H 1.09002 * 109.77051 * 169.89352 * 17 16 15 35 35 H 1.08001 * 125.91926 * 0.30473 * 19 18 17 36 36 H 1.08001 * 126.25655 * 179.97438 * 20 19 18 37 37 H 1.07993 * 126.33873 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.75625 * 293.84094 * 23 15 14 39 39 H 1.08993 * 109.75332 * 54.58971 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1851 1.2097 0.0000 4 6 3.5652 1.2181 0.0060 5 6 4.2409 -0.0194 0.0006 6 6 5.6501 -0.0704 0.0012 7 1 6.1610 -0.8879 -0.4858 8 6 6.3865 0.9382 0.6327 9 7 5.8518 1.6245 1.6103 10 14 8.1356 1.2998 0.0853 11 1 9.0812 0.4584 0.8618 12 1 8.2746 0.9945 -1.3613 13 1 8.4412 2.7339 0.3201 14 6 3.4737 -1.2108 0.0007 15 7 4.1073 -2.4377 0.0013 16 6 3.1803 -3.5095 -0.3877 17 6 3.9699 -4.7733 -0.7495 18 7 4.9180 -5.0487 0.3369 19 6 5.5843 -6.2032 0.5927 20 6 6.3457 -6.0152 1.6924 21 6 6.1394 -4.6894 2.1293 22 6 5.2661 -4.1218 1.2843 23 6 4.7206 -2.7147 1.3122 24 7 2.1523 -1.1511 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8897 -0.5143 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6364 2.1399 -0.0005 29 1 4.1134 2.1487 0.0110 30 1 4.9764 1.3823 1.9507 31 1 2.5090 -3.7272 0.4429 32 1 2.5959 -3.1879 -1.2499 33 1 4.5138 -4.6126 -1.6803 34 1 3.2866 -5.6149 -0.8635 35 1 5.5176 -7.1142 0.0166 36 1 6.9944 -6.7458 2.1527 37 1 6.5998 -4.2188 2.9854 38 1 5.5307 -2.0091 1.4965 39 1 3.9688 -2.6266 2.0965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166602371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:54 Heat of formation + Delta-G solvation = 72.859533 kcal Electronic energy + Delta-G solvation = -22312.593382 eV Core-core repulsion = 19219.968607 eV Total energy + Delta-G solvation = -3092.624774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.46949 -40.85699 -37.97988 -36.41679 -34.30985 -32.65191 -32.43036 -30.39220 -29.67963 -28.86275 -26.27896 -25.48981 -24.26550 -22.49834 -22.28224 -21.30886 -19.86572 -19.49478 -18.31744 -17.25910 -17.04932 -16.80073 -16.31087 -15.65891 -15.62742 -15.11663 -14.66624 -14.63410 -14.44636 -14.41182 -14.26616 -13.56381 -13.25917 -13.21353 -13.06523 -12.98021 -12.92408 -12.62628 -12.60097 -12.43914 -12.28711 -11.99917 -11.56900 -11.02596 -10.63505 -10.17100 -10.00436 -9.49568 -9.33318 -9.01200 -8.76725 -6.42019 0.60980 0.80860 1.34282 1.50009 1.61014 1.78486 2.01036 2.11706 2.29618 2.61050 2.83230 3.40599 3.65490 3.71218 3.93069 4.03600 4.22862 4.26508 4.32667 4.33097 4.49746 4.53484 4.61597 4.71028 4.77508 4.79367 4.84028 4.87616 4.89511 5.00863 5.18752 5.34407 5.39562 5.42699 5.54322 5.72991 5.86875 5.96245 6.07890 6.14362 6.26405 6.31323 6.58326 6.79144 6.83974 7.54616 7.99537 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.007889 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.459866 B = 3548.206370 C = 5426.199400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.010 4.010 3 C -0.142 4.142 4 C -0.191 4.191 5 C 0.036 3.964 6 C -0.509 4.509 7 H 0.075 0.925 8 C 0.008 3.992 9 N -0.810 5.810 10 Si 1.110 2.890 11 H -0.262 1.262 12 H -0.267 1.267 13 H -0.268 1.268 14 C 0.165 3.835 15 N -0.461 5.461 16 C 0.061 3.939 17 C 0.114 3.886 18 N -0.447 5.447 19 C -0.004 4.004 20 C -0.218 4.218 21 C -0.208 4.208 22 C -0.002 4.002 23 C 0.144 3.856 24 N -0.497 5.497 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.280 0.720 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.198 0.802 36 H 0.157 0.843 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -9.611 -2.786 10.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.148 4.148 3 C -0.162 4.162 4 C -0.217 4.217 5 C 0.030 3.970 6 C -0.537 4.537 7 H 0.093 0.907 8 C -0.209 4.209 9 N -0.433 5.433 10 Si 0.928 3.072 11 H -0.187 1.187 12 H -0.191 1.191 13 H -0.193 1.193 14 C -0.069 4.069 15 N -0.181 5.181 16 C -0.067 4.067 17 C -0.006 4.006 18 N -0.124 5.124 19 C -0.134 4.134 20 C -0.242 4.242 21 C -0.233 4.233 22 C -0.114 4.114 23 C 0.017 3.983 24 N -0.210 5.210 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.215 0.785 36 H 0.175 0.825 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.212 -9.295 -3.131 9.882 hybrid contribution -1.475 0.228 0.534 1.585 sum -2.687 -9.067 -2.597 9.807 Atomic orbital electron populations 1.20334 0.87814 1.02544 1.01818 1.20889 0.97094 0.87560 1.09302 1.21659 0.94231 0.98790 1.01508 1.21406 0.94321 0.96892 1.09114 1.18314 0.94846 0.90852 0.93004 1.20375 0.91257 1.09854 1.32225 0.90733 1.28278 1.09700 0.90898 0.91998 1.70591 1.18164 1.36398 1.18106 0.83081 0.69013 0.77849 0.77276 1.18720 1.19123 1.19288 1.19576 0.87454 0.90183 1.09693 1.59105 1.31656 1.00115 1.27195 1.22097 0.93154 0.90111 1.01296 1.22276 0.91366 0.97945 0.89060 1.44355 1.34937 1.10411 1.22687 1.22253 0.99175 0.90963 1.01055 1.21180 1.06341 0.96772 0.99914 1.20655 1.03309 0.96882 1.02494 1.20314 1.04336 0.91526 0.95245 1.20490 0.97799 0.91722 0.88297 1.66892 1.09483 1.30922 1.13748 0.91889 0.90228 0.91972 0.85173 0.88153 0.90862 0.94722 0.89083 0.89163 0.85667 0.78468 0.82502 0.84883 0.89761 0.95814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.15 10.15 71.23 0.72 -1.43 16 2 C -0.01 -0.43 6.79 42.64 0.29 -0.14 16 3 C -0.14 -6.21 9.69 22.32 0.22 -5.99 16 4 C -0.19 -9.55 8.16 22.89 0.19 -9.36 16 5 C 0.04 1.89 5.10 -21.07 -0.11 1.78 16 6 C -0.51 -26.55 6.79 23.36 0.16 -26.40 16 7 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16 8 C 0.01 0.40 4.93 85.25 0.42 0.82 16 9 N -0.81 -42.44 12.57 21.83 0.27 -42.17 16 10 Si 1.11 43.11 30.00 68.60 2.06 45.17 16 11 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 12 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 13 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 14 C 0.16 8.07 6.00 134.05 0.80 8.88 16 15 N -0.46 -20.25 4.11 -702.09 -2.88 -23.14 16 16 C 0.06 2.20 4.73 86.41 0.41 2.61 16 17 C 0.11 3.15 7.23 86.44 0.62 3.77 16 18 N -0.45 -14.19 3.15 -508.72 -1.60 -15.80 16 19 C 0.00 -0.11 11.55 83.36 0.96 0.85 16 20 C -0.22 -6.20 10.87 22.24 0.24 -5.95 16 21 C -0.21 -7.25 10.81 22.04 0.24 -7.01 16 22 C 0.00 -0.09 6.64 40.88 0.27 0.18 16 23 C 0.14 6.30 5.49 85.55 0.47 6.77 16 24 N -0.50 -23.02 8.70 -179.58 -1.56 -24.59 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 29 H 0.10 5.16 7.04 -2.91 -0.02 5.14 16 30 H 0.28 15.36 6.95 -92.71 -0.64 14.71 16 31 H 0.03 1.30 8.07 -2.39 -0.02 1.29 16 32 H 0.09 3.27 7.63 -2.38 -0.02 3.25 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.20 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.08 4.11 6.50 -2.39 -0.02 4.09 16 39 H 0.02 1.10 8.12 -2.39 -0.02 1.08 16 Total: -1.00 -61.85 319.77 3.36 -58.49 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 1.17 Total: 32.65 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 5.91 Total: -30.62 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -5.78 Total: -105.69 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.06 Total: 45.17 kcal Total: -61.85 3.36 -58.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166602371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.351 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds