Wall clock time and date at job start Tue Mar 31 2020 05:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32558 * 120.40200 * 2 1 4 4 C 1.31796 * 121.02492 * 179.97438 * 3 2 1 5 5 N 1.31727 * 121.85154 * 359.97438 * 4 3 2 6 6 C 1.33041 * 120.68274 * 359.97438 * 5 4 3 7 7 N 1.38516 * 120.54200 * 180.02562 * 6 5 4 8 8 C 1.36931 * 119.99849 * 96.26095 * 7 6 5 9 9 H 1.08001 * 119.99661 * 146.98389 * 8 7 6 10 10 C 1.38850 * 120.00138 * 326.98075 * 8 7 6 11 11 N 1.31536 * 119.99971 * 154.26867 * 10 8 7 12 12 Si 1.86801 * 119.99986 * 334.26659 * 10 8 7 13 13 H 1.48509 * 109.46700 * 89.30225 * 12 10 8 14 14 H 1.48496 * 109.47184 * 209.29999 * 12 10 8 15 15 H 1.48500 * 109.47192 * 329.30711 * 12 10 8 16 16 C 1.46502 * 120.00121 * 276.26963 * 7 6 5 17 17 C 1.50699 * 109.47472 * 94.80239 * 16 7 6 18 18 C 1.38232 * 120.00036 * 273.07320 * 17 16 7 19 19 C 1.38235 * 119.99846 * 179.76749 * 18 17 16 20 20 C 1.38232 * 120.00032 * 0.50408 * 19 18 17 21 21 C 1.38236 * 119.99997 * 359.74725 * 20 19 18 22 22 C 1.38232 * 119.99978 * 93.34476 * 17 16 7 23 23 C 1.38139 * 120.40156 * 179.97438 * 2 1 3 24 24 C 1.50697 * 120.83590 * 0.04146 * 23 2 1 25 25 H 1.09003 * 109.46637 * 89.99764 * 1 2 3 26 26 H 1.08995 * 109.47291 * 209.99817 * 1 2 3 27 27 H 1.08993 * 109.46985 * 330.00535 * 1 2 3 28 28 H 1.08003 * 119.07839 * 180.02562 * 4 3 2 29 29 H 0.96992 * 119.99777 * 179.97438 * 11 10 8 30 30 H 1.08994 * 109.46924 * 214.80830 * 16 7 6 31 31 H 1.09008 * 109.46751 * 334.80286 * 16 7 6 32 32 H 1.07998 * 120.00136 * 359.97438 * 18 17 16 33 33 H 1.08004 * 120.00125 * 180.22951 * 19 18 17 34 34 H 1.08003 * 120.00143 * 179.72562 * 20 19 18 35 35 H 1.08007 * 120.00210 * 179.97438 * 21 20 19 36 36 H 1.08004 * 120.00059 * 0.02562 * 22 17 16 37 37 H 1.08999 * 109.47671 * 275.29361 * 24 23 2 38 38 H 1.08999 * 109.47375 * 35.30102 * 24 23 2 39 39 H 1.09002 * 109.46743 * 155.29773 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1778 1.1433 0.0000 4 6 3.4957 1.1576 0.0005 5 7 4.2030 0.0463 0.0015 6 6 3.6022 -1.1407 0.0026 7 7 4.3488 -2.3075 0.0042 8 6 4.6084 -2.9525 1.1838 9 1 4.6864 -4.0295 1.2045 10 6 4.7715 -2.2220 2.3533 11 7 4.5184 -2.7793 3.5176 12 14 5.3504 -0.4478 2.2733 13 1 4.1747 0.4514 2.1518 14 1 6.1016 -0.1159 3.5105 15 1 6.2347 -0.2684 1.0939 16 6 4.8609 -2.8512 -1.2561 17 6 6.2719 -2.3692 -1.4748 18 6 6.4992 -1.1586 -2.1022 19 6 7.7934 -0.7142 -2.2986 20 6 8.8604 -1.4853 -1.8768 21 6 8.6331 -2.6983 -1.2540 22 6 7.3388 -3.1402 -1.0531 23 6 2.2061 -1.1915 0.0005 24 6 1.4809 -2.5125 0.0002 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 4.0103 2.1072 0.0009 29 1 4.6326 -2.2691 4.3345 30 1 4.8516 -3.9402 -1.2123 31 1 4.2304 -2.5153 -2.0795 32 1 5.6657 -0.5584 -2.4361 33 1 7.9710 0.2333 -2.7854 34 1 9.8716 -1.1401 -2.0341 35 1 9.4668 -3.3009 -0.9248 36 1 7.1613 -4.0883 -0.5672 37 1 1.2223 -2.7854 1.0233 38 1 0.5712 -2.4275 -0.5942 39 1 2.1249 -3.2802 -0.4288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166992593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:11 Heat of formation + Delta-G solvation = 104.628049 kcal Electronic energy + Delta-G solvation = -22685.123551 eV Core-core repulsion = 19593.876363 eV Total energy + Delta-G solvation = -3091.247188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52886 -38.67186 -36.28839 -34.09284 -32.31136 -32.22951 -30.32574 -30.15475 -28.58436 -26.66349 -25.97277 -23.75516 -22.04411 -21.93045 -21.36463 -20.17405 -17.92653 -17.20859 -16.36131 -15.61121 -15.35957 -14.68234 -14.50450 -14.17125 -14.16467 -13.70681 -13.07244 -13.01552 -12.88318 -12.78435 -12.59382 -12.30464 -12.26239 -12.13287 -11.87026 -11.50446 -11.15156 -10.87060 -10.70993 -10.52957 -10.41418 -10.14229 -9.91756 -9.21933 -8.73338 -8.39643 -8.33717 -8.24824 -8.14554 -7.44100 -6.28259 -3.69559 1.62192 1.76464 1.93909 1.98888 3.40610 3.53918 3.85586 4.17676 4.41562 4.53210 4.57951 4.64965 5.00246 5.16584 5.36729 5.40844 5.48140 5.50806 5.52614 5.66012 5.72697 5.76430 5.84875 5.98372 6.05483 6.08882 6.17496 6.18670 6.26352 6.33611 6.53799 6.56696 6.62287 6.78277 7.00370 7.02107 7.04841 7.28928 7.58398 7.75420 7.79660 8.00388 8.68192 8.85794 9.39371 9.63957 10.81235 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.007807 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.477041 B = 3585.500369 C = 3990.919928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 N -0.545 5.545 4 C 0.293 3.707 5 N -0.539 5.539 6 C 0.432 3.568 7 N -0.526 5.526 8 C -0.269 4.269 9 H 0.098 0.902 10 C 0.044 3.956 11 N -0.874 5.874 12 Si 0.898 3.102 13 H -0.296 1.296 14 H -0.319 1.319 15 H -0.245 1.245 16 C 0.173 3.827 17 C -0.084 4.084 18 C -0.096 4.096 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.097 4.097 23 C -0.185 4.185 24 C -0.086 4.086 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.177 0.823 29 H 0.268 0.732 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.729 1.566 -10.372 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.012 3.988 3 N -0.262 5.262 4 C 0.004 3.996 5 N -0.260 5.260 6 C 0.197 3.803 7 N -0.242 5.242 8 C -0.396 4.396 9 H 0.115 0.885 10 C -0.162 4.162 11 N -0.511 5.511 12 Si 0.732 3.268 13 H -0.225 1.225 14 H -0.250 1.250 15 H -0.169 1.169 16 C 0.049 3.951 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.194 4.194 24 C -0.144 4.144 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.194 0.806 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.275 2.325 -10.177 10.517 hybrid contribution 0.348 0.607 0.540 0.884 sum -0.927 2.932 -9.637 10.116 Atomic orbital electron populations 1.20670 0.88966 1.03349 1.02642 1.21331 0.96781 0.87873 0.92830 1.68074 1.10291 1.30168 1.17681 1.24286 0.86717 0.96287 0.92330 1.68482 1.42280 0.99809 1.15451 1.18224 0.87534 0.86440 0.88147 1.41830 1.55299 1.22132 1.04907 1.18800 1.46338 0.92178 0.82328 0.88463 1.25516 0.96496 0.99073 0.95074 1.69860 1.44716 1.38524 0.97954 0.86476 0.80443 0.83843 0.76083 1.22481 1.24974 1.16892 1.20361 0.88766 0.98279 0.87665 1.20718 0.97401 0.94859 0.95721 1.20853 0.96193 0.95615 0.98816 1.20962 0.93060 0.99228 1.01399 1.20940 0.98187 0.95522 1.00702 1.21039 0.96850 0.96660 1.00104 1.21009 0.92008 1.00111 0.98500 1.21696 0.95389 0.97281 1.04991 1.20427 0.98372 0.93395 1.02222 0.90590 0.90435 0.90753 0.80581 0.92187 0.90815 0.92771 0.87381 0.87208 0.87193 0.86923 0.86200 0.91027 0.92737 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.48 36.01 0.34 -1.01 16 2 C 0.16 2.89 6.82 -82.32 -0.56 2.33 16 3 N -0.55 -10.83 10.37 -10.88 -0.11 -10.94 16 4 C 0.29 6.02 10.72 -92.21 -0.99 5.03 16 5 N -0.54 -12.24 6.05 -13.79 -0.08 -12.32 16 6 C 0.43 9.67 4.26 -154.73 -0.66 9.01 16 7 N -0.53 -11.82 1.31 -116.12 -0.15 -11.97 16 8 C -0.27 -6.99 9.84 -15.05 -0.15 -7.13 16 9 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 10 C 0.04 1.23 5.29 -17.45 -0.09 1.14 16 11 N -0.87 -25.76 13.96 55.49 0.77 -24.99 16 12 Si 0.90 24.23 23.86 -169.99 -4.06 20.18 16 13 H -0.30 -8.07 5.34 56.52 0.30 -7.77 16 14 H -0.32 -8.93 7.11 56.52 0.40 -8.52 16 15 H -0.24 -6.75 6.79 56.52 0.38 -6.36 16 16 C 0.17 3.27 5.76 -5.19 -0.03 3.24 16 17 C -0.08 -1.61 5.43 -104.63 -0.57 -2.18 16 18 C -0.10 -1.76 9.71 -39.58 -0.38 -2.15 16 19 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 20 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 21 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 22 C -0.10 -1.78 9.69 -39.59 -0.38 -2.16 16 23 C -0.19 -3.71 5.94 -104.11 -0.62 -4.33 16 24 C -0.09 -1.47 8.92 36.00 0.32 -1.15 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.08 0.96 6.90 -51.93 -0.36 0.60 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.18 3.07 8.06 -52.48 -0.42 2.64 16 29 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 30 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 31 H 0.05 0.93 7.97 -51.92 -0.41 0.52 16 32 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 36 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.73 7.12 -51.93 -0.37 0.36 16 39 H 0.08 1.33 7.39 -51.93 -0.38 0.95 16 LS Contribution 323.30 15.07 4.87 4.87 Total: -1.00 -31.78 323.30 -9.14 -40.92 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.42 Total: 1.24 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -4.96 Total: -7.00 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.43 Total: -60.22 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -4.06 Total: 20.18 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.78 -9.14 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.552 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds