Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46676 * 2 1 4 4 C 1.38662 * 120.72378 * 269.71718 * 3 2 1 5 5 N 1.32234 * 119.19845 * 179.78851 * 4 3 2 6 6 C 1.32536 * 120.73673 * 0.47887 * 5 4 3 7 7 N 1.38443 * 119.21278 * 179.75069 * 6 5 4 8 8 C 1.36987 * 120.00000 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99528 * 318.86973 * 8 7 6 10 10 C 1.38833 * 119.99954 * 138.87939 * 8 7 6 11 11 N 1.31538 * 120.00120 * 341.62169 * 10 8 7 12 12 Si 1.86797 * 119.99810 * 161.62857 * 10 8 7 13 13 H 1.48501 * 109.47581 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47416 * 120.00042 * 12 10 8 15 15 H 1.48509 * 109.47052 * 239.99772 * 12 10 8 16 16 C 1.46502 * 120.00032 * 0.02562 * 7 6 5 17 17 C 1.50699 * 109.47165 * 84.41254 * 16 7 6 18 18 C 1.38241 * 119.99917 * 264.32741 * 17 16 7 19 19 C 1.38234 * 119.99982 * 179.76695 * 18 17 16 20 20 C 1.38239 * 119.99997 * 0.50480 * 19 18 17 21 21 C 1.38240 * 119.99848 * 359.74222 * 20 19 18 22 22 C 1.38232 * 120.00101 * 84.59619 * 17 16 7 23 23 N 1.32537 * 121.57381 * 359.77338 * 6 5 4 24 24 C 1.32235 * 120.74097 * 359.97438 * 23 6 5 25 25 H 1.09004 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47318 * 60.00289 * 1 2 3 27 27 H 1.08993 * 109.47342 * 300.00017 * 1 2 3 28 28 H 1.08990 * 109.47298 * 119.99773 * 2 1 3 29 29 H 1.09000 * 109.46985 * 240.00040 * 2 1 3 30 30 H 1.08005 * 120.39946 * 0.02890 * 4 3 2 31 31 H 0.96998 * 120.00412 * 179.97438 * 11 10 8 32 32 H 1.08994 * 109.47361 * 204.41207 * 16 7 6 33 33 H 1.09001 * 109.46693 * 324.41509 * 16 7 6 34 34 H 1.08004 * 119.99913 * 359.97438 * 18 17 16 35 35 H 1.07998 * 120.00233 * 180.22301 * 19 18 17 36 36 H 1.07993 * 120.00137 * 179.72548 * 20 19 18 37 37 H 1.07993 * 119.99832 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00127 * 359.97438 * 22 17 16 39 39 H 1.07994 * 120.40364 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2739 2.0868 -1.1920 5 7 2.7102 3.3346 -1.1568 6 6 2.9254 3.9446 0.0000 7 7 3.3873 5.2497 0.0000 8 6 3.6156 5.8954 1.1863 9 1 2.9220 5.7801 2.0061 10 6 4.7385 6.6983 1.3347 11 7 5.7540 6.5680 0.5088 12 14 4.8073 7.9634 2.7074 13 1 3.5476 7.9116 3.4920 14 1 5.9580 7.6658 3.5976 15 1 4.9709 9.3190 2.1234 16 6 3.6319 5.9402 -1.2688 17 6 2.3427 6.5358 -1.7732 18 6 1.5750 5.8449 -2.6920 19 6 0.3901 6.3890 -3.1511 20 6 -0.0219 7.6288 -2.6992 21 6 0.7483 8.3220 -1.7842 22 6 1.9307 7.7755 -1.3212 23 7 2.7093 3.3349 1.1568 24 6 2.2682 2.0888 1.1920 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5137 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.1040 1.5937 -2.1377 31 1 6.5384 7.1292 0.6123 32 1 4.3632 6.7337 -1.1155 33 1 4.0148 5.2295 -2.0012 34 1 1.8994 4.8784 -3.0487 35 1 -0.2114 5.8477 -3.8662 36 1 -0.9454 8.0559 -3.0612 37 1 0.4266 9.2907 -1.4315 38 1 2.5324 8.3170 -0.6064 39 1 2.0945 1.5971 2.1377 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993437.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = 81.076642 kcal Electronic energy + Delta-G solvation = -21872.513644 eV Core-core repulsion = 18780.245190 eV Total energy + Delta-G solvation = -3092.268454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87868 -38.63149 -36.20900 -33.83721 -32.60301 -31.96712 -30.80267 -30.31154 -28.34801 -26.06363 -24.70208 -23.36951 -22.60726 -21.94075 -20.92368 -20.24486 -17.84658 -16.83284 -16.19819 -15.77083 -14.99434 -14.59988 -14.52550 -14.36486 -13.84973 -13.68737 -13.51095 -13.33627 -12.85589 -12.74423 -12.45394 -12.16662 -12.06179 -11.60476 -11.54738 -11.24064 -11.11519 -10.93188 -10.79589 -10.45231 -10.36190 -10.21256 -9.74918 -9.68989 -9.34760 -8.62633 -8.35352 -8.20518 -7.87442 -6.92844 -6.40051 -4.01340 1.88678 1.97415 2.23059 2.29154 3.12600 3.19805 3.25418 3.95053 4.29104 4.64451 4.74459 5.08536 5.30711 5.33848 5.36033 5.39847 5.44763 5.53243 5.56177 5.73132 5.83993 5.96268 6.01889 6.07465 6.12218 6.14058 6.20028 6.38802 6.45862 6.47494 6.57296 6.70290 6.87409 7.00217 7.00815 7.07731 7.27195 7.42019 7.51133 7.59495 7.98789 8.28358 8.47658 9.09666 9.27251 9.83762 10.58982 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.011841 B = 0.007247 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.001336 B = 3862.492020 C = 5590.697497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.322 4.322 4 C 0.193 3.807 5 N -0.587 5.587 6 C 0.521 3.479 7 N -0.389 5.389 8 C -0.289 4.289 9 H 0.095 0.905 10 C 0.036 3.964 11 N -0.864 5.864 12 Si 0.920 3.080 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.167 3.833 17 C -0.084 4.084 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.133 4.133 21 C -0.133 4.133 22 C -0.096 4.096 23 N -0.559 5.559 24 C 0.194 3.806 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.270 0.730 32 H 0.109 0.891 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.670 -3.715 -4.404 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.334 4.334 4 C 0.021 3.979 5 N -0.311 5.311 6 C 0.168 3.832 7 N -0.083 5.083 8 C -0.418 4.418 9 H 0.112 0.888 10 C -0.170 4.170 11 N -0.499 5.499 12 Si 0.746 3.254 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.204 1.204 16 C 0.043 3.957 17 C -0.085 4.085 18 C -0.116 4.116 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.151 4.151 22 C -0.115 4.115 23 N -0.281 5.281 24 C 0.021 3.979 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.159 0.841 31 H 0.080 0.920 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.954 -2.251 -4.424 8.543 hybrid contribution -0.261 -0.368 0.688 0.823 sum -7.214 -2.619 -3.735 8.536 Atomic orbital electron populations 1.21788 0.96257 1.00395 1.01795 1.19975 0.94757 0.92683 1.01362 1.20715 1.17429 0.99455 0.95762 1.22395 0.89368 0.89325 0.96808 1.67859 1.22969 1.11071 1.29193 1.19791 0.92592 0.86897 0.83887 1.42034 1.56451 1.04010 1.05807 1.19519 1.06660 1.23966 0.91663 0.88777 1.25506 0.93734 0.99442 0.98312 1.70006 1.04454 1.37342 1.38127 0.85955 0.78759 0.79935 0.80703 1.18970 1.20563 1.20415 1.20373 0.92579 0.97718 0.85046 1.20633 0.98374 0.94081 0.95425 1.21265 0.94100 0.99469 0.96746 1.21054 0.97169 0.96064 1.01027 1.20980 0.99563 0.95677 0.98889 1.21050 0.95637 0.99848 0.98573 1.21144 0.96183 0.95613 0.98542 1.67957 1.20665 1.10371 1.29147 1.22538 0.89123 0.89413 0.96863 0.93436 0.93082 0.93030 0.92237 0.92286 0.84070 0.91987 0.87321 0.91308 0.85499 0.87034 0.87144 0.86897 0.86099 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.05 -0.63 6.11 -27.88 -0.17 -0.80 16 3 C -0.32 -5.53 5.17 -104.31 -0.54 -6.07 16 4 C 0.19 3.54 11.00 -17.22 -0.19 3.35 16 5 N -0.59 -12.89 8.18 -13.90 -0.11 -13.00 16 6 C 0.52 12.86 8.10 -322.64 -2.61 10.25 16 7 N -0.39 -9.91 2.58 -118.33 -0.31 -10.22 16 8 C -0.29 -7.66 8.82 -15.03 -0.13 -7.79 16 9 H 0.09 2.59 7.78 -52.49 -0.41 2.18 16 10 C 0.04 0.92 4.94 -17.46 -0.09 0.83 16 11 N -0.86 -22.83 11.63 55.49 0.65 -22.19 16 12 Si 0.92 19.93 29.59 -169.99 -5.03 14.90 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 C 0.17 3.87 4.99 -5.19 -0.03 3.84 16 17 C -0.08 -1.73 5.43 -104.62 -0.57 -2.30 16 18 C -0.10 -1.83 9.33 -39.58 -0.37 -2.20 16 19 C -0.14 -2.21 10.05 -39.58 -0.40 -2.61 16 20 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 21 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 22 C -0.10 -1.87 9.72 -39.58 -0.38 -2.26 16 23 N -0.56 -13.47 9.47 -13.90 -0.13 -13.60 16 24 C 0.19 3.78 11.00 -17.22 -0.19 3.59 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.14 2.10 8.06 -52.48 -0.42 1.67 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.11 2.68 5.74 -51.93 -0.30 2.38 16 33 H 0.07 1.60 7.43 -51.93 -0.39 1.22 16 34 H 0.13 2.37 7.37 -52.48 -0.39 1.98 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -28.98 333.04 -11.27 -40.25 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.26 Total: 7.44 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -6.09 Total: -8.60 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.09 Total: -59.01 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.98 -11.27 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993437.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.329 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds